Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0040000 |
| Transcript ID | LotjaGi5g1v0040000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; TAIR: AT5G11730.1 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; Swiss-Prot: sp|O31813|YNDJ_BACSU Uncharacterized membrane protein YndJ; TrEMBL-Plants: tr|A0A151T0P4|A0A151T0P4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0040000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:6716926..6721177) extracted from Lotus japonicus Gifu genome v1.2.
TGGCAACGCTCAACAACAACAACAACAACAAAAACAACCTTAGCCGCTGTCGTGTGTTTCCATTCAGATTCCTCAAATTC ATTCACCCTCAATCTATCTCCAAAATCAACGCCTACTAACATTTTCACTTTTTCTTCCTCTCTGACCCTTCCCATTTCAC TGTTTCTCATCTCCTGTATCAACTAGCAATTTGGTAAGATCCCACAAACAAAAAATCCAAACTCAGTTTTGTTAATACCC ATGTGTTGTAATCTCGTTCTTCATTACATCACATGTTCAAAATTTGACTTTTCTCACCTTAGCACCATTTTTAGATCCAT GGCGGTTGTTATAGTTTTTTAGTGATTATGGCTCAATTTTGAATCACATGTGATATATTTCATGCCCTTATATTCATTGA TGATCAGAGATCTTAGTTGCATTACCTAGACACAGAGTAGAGGGTGGTTGACAACTTGACATAGAAGAATTTCTTTTTTT TTTTCATTTTTTTTTTCACTTTTCTGCTTTGATTGCTTTTGGTTTTGGGTTTTGAGCAAGATGCAATCCAGGGTTGTGAC CCTTGAAGAAGGAAAGGAAAGAACCAACCAGTCCAAAGGCTTGCCTTTAAGACCATTGCGGCTACTTGTTCTGTTTATTG CTCTGTGTGTTGTGTTCTCTGTGATCAGCATATACACTATTAAGCATTTTGGGATAGAGAGTGTTGTCACCACAGTCAGC TCAAGTTTTCAGTTTCAACCATGTAATGAGGGACAGGGTGGTTTGGAAAAATGGATTAGCCCTCCTTCTACATGGATCCA CAATATGAGTGACCAAGAATTGCTTTGGAGAGCTTCCTTTGTTCCTCGGATCAAGGATTACCCTTTTGAAAGAGTTCCCA AGATTGCTTTCATGTTCTTGACAAAAGGACCATTGCCCTTAGCACCACTTTGGGAGAGGTTTCTGAAGGGGCATGAAAGG CATTATTCTGTATATATTCATTCACTGCCATCATATCAAGCTCAGTTTCCTCCTTCTTCTGTCTTTTATAAGAGGCAGAT CCCTAGTCAGGTATGGTGATTTAGATCTTATGCTGCCTACAAGCTCATTTTTTCACTTGTAGTTTACTGCCTTGATCTGA AGTTGTGGATACTTAATTGGTGCTAGTTTAGTAGTTTTACATGGTTCATCTACTATCCTCATATTTTCATGTTTTTTTCT TTGGCCATGTTAATGCCTGTTTTAAGGCTCTGATGAGAATTTTGGTATCATTGATCATGGCATCTCTGCACTTAATATGG TTATATCTTACTTTCTGAATTCTGTCCAGTGGTGATGCTACTACTTGGTCAGTGCATCAGGTTGTTAGACCTAGGTAAGG ACCTAAGGAAGAGGCTGAGGAGGGTATGCAAAATATGCTGGTTTACTATGCTGTGAGTTTTGGTTTCTAACAAGCTTGAG TTAGAAAATTTTAGTAATCTTGTCATGGCAATGCGATTAGAAGAATTTTAAATTATACTGAGAATATAAAGATGCTGGTA GGATGTATGTGAGCATAGAAACCAGCAGGGATCTGACCAAAGTTATGTGTACCTAGTTCTATATAAGGACATGACAGAAG TATGTGATAAGAATCAAATAAGATTAATCATTAGTTAAGGTTGAGCTTCCTCCTCGGAAAGGTATGGTGGTAATTGTTAA CTATTTATTCTGTTGTCTTTTGTAGTTCTCGTTCAGATGTAGTCTTGATGGATGGTATGCTCATATTTAGGATTTGACAG GAAGATGGGAAAGTATGTTTAGGAGGTCATCATATTTTATATTTTTAATCAGGGATTTGTTATGGGCCAGTTTTTCTTAA AGTTTAAGCTATTAAGTGATGGCAAAATATTAGTTTCTAGAGCTAGTTGACCTTATAATGTGGGCGATACACTGGCTCAC TCCATCCTAGGCTTATATTCAACTTAATTATGCAGAATAGGAGTGGAAAGGTTATAACTCCATAAGTGCATATCACCTGG TCAGAGGTTCCAATATTATGTCAATGAATAACTCTCCGAAAAACTTATTCTTAGATGAAGACATAAGACTAGTTTTAGAT ATCAAATAAGGTTCAGGGGTGACTTCACTGCTTTTCATATTACGATTCAAAGGCTAATATACCTGACATCTTGTTAAAGT GACTCATTTAACCAAACATTCCACATTGGCAGGATGACATAAAACTTGGGGTCCCCACTGATTTGGTTAGAAGCTTAGAG CTGAGAATGATCACAAAATTCAATTGCACAGAAACCTGCAGCAAACGGGAAGATCAAATTATTTTAACTAGCTGGTGAAT GTTAGGTAAGCTATAAGCCCCCAGTGGGCTGTTTTCTGTTAGTTAAGGGAGTTAGGGTTAGTTTGTGGTAGTTAGTTAGA ATTGTAACAGAATTTGACTGAGATAGGCTATGGAGAGGTTGGGGGAGAAGATTAGGGCGTATTCTATTTAGTTGGAGATT GGTTTTGGAGGGATAGATCTCTGGCTATTGAAATCTTGAGAGGAACAACTTGTTACTAGTATTAATTTTTTCTCTTAATA GCTTATTGATAGAACACAGAAATTAAGAAGAGAAAAGTAAAGGAAGAGAGAGAGAGAGAATTGTTTCCAAAAATAGCTTC TGTATTACTGGAATTAATCAAAGAGAAAATCCCCCCCCCCCAAAGGGTTTTCTCGTTAACACCTAAACTTGAGATAGGTA CAAAGAATTAACCAACGAAATGCCTATTCCCTGTACAAGTCTGGTATTTTACCTCTCCCCCTTAGCAAACCTTCTGACTG CCTAACTCTACTCCTAACTATTGTATTAACTAATCGTTGCTTTTTTGTTCCTTGTAGTATATATCTTCCATAAATGTCCA ACCTTTTTTCCTAAGTCCCTATCACTTATGACTAATCTATAAGTTTTTTAAAGCTTATTTTGATAAGCTTCTATAATTAG CTTATGATAACTTTCTCAACACTTAAGAATAAGGTTATATGATAAGCAAGCGCTTTAATTTATCTGTGTACTCAAACGCA CCCTATGAACAGGTAGGGAGAGAAGATTAGGGGTAGTCTATTTATTGGAGATTAGTTTTGGTGTGTACCTCGAACATAAG GGCTTTGGAGGGCCTTACTTTCATCCAAACGTTGAAAATACATGAAAGGCTATGCTGGCTTTCAATTTATAACAATAGTT TTCTTGTGCAGGTTTCTGAGTGGGGAAGGATGAGCATGTGTGATGCTGAACGAAGACTACTTGCTAATGCATTGCTTGAC ATTTCCAATGAGTGGTTTATTCTGCTGTCTGAGTCATGCATCCCTCTTTATAAATTCAGTTTCATTTACCAATACATAAT GAAATCCAAATACAGTTTCATGGGTGCATTTGATGATCCCGGTCCATACGGAAGAGGACGCTATAACGAGAAGATGGCCC CTCTGGTGAACATCACAAAGTGGCGTAAAGGCTCACAATGGTTTGAAATAAACAGAAAGCTTGCCATCACCATTGTTGAA GACACTACATTTTATCCAAAGTTTGAAACATATTGTAGACCAGCTTGTTATGTGGATGAGCACTATTTCCCTACCATGTT GACCATTCAAGCAGGGAATGCCTTGGCAAATAGGAGCATTACTTGGGTGGACTGGTCCAGAGGTGGAGCTCACCCTGCTA CCTTTGGAAAAACAGATATTTCAGAGGAGTTTCTGAATCGAGTTCGTGCCGGTCACCATTGCCAATACAACAATGGAAAC TCTTCTGCTTGTTTTCTTTTTGCCAGAAAATTTTCTCCTAGTACTTTGGAGCCTTTGTTACATATGGTGGATGCAAAGGT CTTGGACTTCTGAGAAATACTTTTCACTTTTCATTGCTACTGCAGGAAATATAGATGTAGAAGAAAGACTTTAGAAACTA GCAAGTTTATTACATGGCATGACCATGTGATTGCCTCATTGATGAGTGCTAGGTGGTAGAGATGAATGACCTCACTTTTT CTTACACCGCTGATAGCATGTTTGGAAATCCTTCTACATTTGATTCTAAAGTCAAAATCAATTTCAGGAAGAAGCTTCTT TGAGTATTTTGTGGGCACCAGAATTGTTTCTAAGGAAAAGTTAGATGATTCAAACATGTTATGAGTCATTTTTGAATGTA CAAAGGAGACATATTTGATCATACTTTTGTTTAATATTAATTGTTGGATCTTTTTAGTGTGGGTTTTTTTATCCATTGGA TTGGAAGTGAAT
CDS sequence (LotjaGi5g1v0040000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATGTGTGATGCTGAACGAAGACTACTTGCTAATGCATTGCTTGACATTTCCAATGAGTGGTTTATTCTGCTGTC TGAGTCATGCATCCCTCTTTATAAATTCAGTTTCATTTACCAATACATAATGAAATCCAAATACAGTTTCATGGGTGCAT TTGATGATCCCGGTCCATACGGAAGAGGACGCTATAACGAGAAGATGGCCCCTCTGGTGAACATCACAAAGTGGCGTAAA GGCTCACAATGGTTTGAAATAAACAGAAAGCTTGCCATCACCATTGTTGAAGACACTACATTTTATCCAAAGTTTGAAAC ATATTGTAGACCAGCTTGTTATGTGGATGAGCACTATTTCCCTACCATGTTGACCATTCAAGCAGGGAATGCCTTGGCAA ATAGGAGCATTACTTGGGTGGACTGGTCCAGAGGTGGAGCTCACCCTGCTACCTTTGGAAAAACAGATATTTCAGAGGAG TTTCTGAATCGAGTTCGTGCCGGTCACCATTGCCAATACAACAATGGAAACTCTTCTGCTTGTTTTCTTTTTGCCAGAAA ATTTTCTCCTAGTACTTTGGAGCCTTTGTTACATATGGTGGATGCAAAGGTCTTGGACTTCTGA
Protein sequence (LotjaGi5g1v0040000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMCDAERRLLANALLDISNEWFILLSESCIPLYKFSFIYQYIMKSKYSFMGAFDDPGPYGRGRYNEKMAPLVNITKWRK GSQWFEINRKLAITIVEDTTFYPKFETYCRPACYVDEHYFPTMLTIQAGNALANRSITWVDWSRGGAHPATFGKTDISEE FLNRVRAGHHCQYNNGNSSACFLFARKFSPSTLEPLLHMVDAKVLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 200 | 200 | 1.4E-120 | – | |
| PANTHER | 1 | 200 | 200 | 1.4E-120 | – | |
| Pfam | 1 | 165 | 165 | 5.2E-62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0040000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…