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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0042300 |
| Transcript ID | LotjaGi5g1v0042300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT3G25690.3 Hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|V7CS35|V7CS35_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0042300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7069108..7074131) extracted from Lotus japonicus Gifu genome v1.2.
CCGAAGTGTGGGCCCCCACTCCTTAAAACAACCGTTGCTCCTCCCTATTTCCAGGCTCCGACCTCGTAGTCCTCGCACAC TTGAATTTGTCTGTCTCCTACATTACACTATTTGCACGCTTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCAACATTTCAAATTTCAAACATTCAAAACCAAACCCTTCTACTTTCCTTACATCATCATCATCATCATCATCAAACTCA AAAATCCACTACCCTTTCTTACATTCTCCATAACTACCTTAATCTGCAGTTGCTATGTTCTTCATTTTCTGTGTCTCCAT TCAAAACCTAAACCCTCATTCCTAAGAAAACTGAGCTTTCATTCAAAATGAAGGAAGATAATAACCCATTAGAGAACAGG TCCAAACCTTCAAGATTTTCTGATCAAAACCAACCCCCACAACCAAAGCTTCAATCCTCCAAAGGTAGCAGCAACATGAC CAACAACAATCACTCAAAACCTAGGTTGTGGGGTGCCCACATTGTCAAAGGCTTCTCAGCTGATAAGAAGACCAAAAATC CTCAGCAATCAACGGTTCCAACCAAGAAACAGACCCTGACAACAACGATTTCAGATGTTGTTGTTACAACCCAGAAGAAT AACAACCCTTTTGTCCCTGCTCATTCCAGAGTCAAGAGGTCCCTCATAGGTGATTTATCATGCTCCCTGAATTCCCAGGT TCACCCTCATGCGTTCCCTTCGCATAGGAGGCAATCCTCTACTGATTTGTTCACTGAGCTTGATCATATGAGAAGCTTGC TGCAAGAATCGAAGGAGAGGGAGGGTAAGCTGAATGCTGAGCTGGTGGAGTGTAAGGGGAAGCAGAGTGAGGTTGATGAG CTTGTGAAGAAGGTTGCTTTGTTGGAAGAAGAGAAGACTAGTCTCAATGAGCAATTGGGTTCTTTGAAGAGTGTGTTGGA GAGAAAAGAGGAAGGGGTGAAAGGGGAACGCAGGGATTTTTGTTCTGTGCAGAATCTTGAGCTGGAGGTTGTGGAATTGA GGAGGCTGAATAAGGAGCTGCAGATGCAGAAGAGGAACCTCACTTGCAGGCTCTCTTCTCTTGAAGCTCAGTTGCCTTGT CCTGCCAACTCTTCAGAGGTAATTTTTCTCCATTTGGTTGGTTCTTCTTTTTTATGAGGCATAAAAGTTTCTTTATCGAT GTTCTTCTGTTGATGGGTTGGAGAAAAATGATCATAGATGTGATGTGAGGAATTGAATAAGCAAATTCGAAGAAAGAGTG GAGGAAGGACCTTGTAACACTTTGCTTGAGTTATTAATTAACATTTATTAAAATGTACAAAGGTATTAAATTACGATTGG CGGCTACGATTATGTTGCGGAACTGCGGATAAATGCGGGTTGTTGTGGTCATTTTTTGTGATTGTGGTTGTACACCCCAA CTTAAAATGCTTAATTACTTAATGCACTGATTCATTACCAAACCGATCGGGAAATTTATTCCCTTTTAGATATAATATTT CTTGTGCACATTGATTTGTGTTGGTTGCATATTAGAATTTAAGCTCCTTAATCTTTGGTGCAGTGTATTTTGTACTAGTT GTTGCTTATGTCTGTTTCACCAACAATTGAAGGTCATTGTAACACTTTTTTGAGTTAGTATGAACTTGATTTGTTTGATG CACTGATTCATTAATTGGGAAATTTATTTAACTTTAGATTCCAATTTTTTGTGCACATTGATTTGTTTTAGTTGCATAAT TTTTCATGTTTCACTAGTTGCTTATGATTGTTTCATCAACAATTTTCTAAAGTTATGAGGCTGAGCTTTCACGTTGGTTT TGCTGATTCACCCTTTCCTCCTCTAAATGTCTTATTTCTGATCAGAGTGACATTGTTGCAAAAATTAAAGCGGAGGCATC ATTGCTCAGGCACACTAATGAAGACCTGTCTAAGCAAGTAGAAGGTTTACAAACAAGCAGATTGAATGAGGTTGAGGAGC TTGCCTACTTGAGGTGGGTGAATTCATGTCTGAGAAACGAGTTGAAGAATACATGTTCAGCATTGGAGTCTGATAAGCCA TCTAGCCCTCAATCTGTTATGAGCAATAGTGGAGATGATTGTGTCAGTTCTTTCTCTGATCAAACCAATAGGTACTCAAA ATGTAGTATTAGTACAAGTAGGTTCAGTTTGATAAAGAAGCCGAAAAAGTGGCCTATAACTAGTGACCATTTGTCGCAAT TAGAGTGTCCAGATAGTCTCATTGAGAAAAATTGGATTGAACCTGAGGTAATGGGTAGAAGCCCCAGTAGAAGACACTCT ATCAGTGGATCCAATTGCTCAGAGGAAGAGATTCTCCTCAATAAGAGAAGACAATCTGATATTTTTGTATGTTCAAAAGA AATGGAAAAGGATTCAGTGCCATTATCTGTTCAATCTGGTTTGGAGATTATCCAAAGACCACAATGTTTTGGCAACTTCC AAGAAGCTAACAAGCTTTTAGCTTCTTCAGATGTTGAGAAGAGGGCCCTACGCGTGCCGAATCCCCCTCCAAGGCCTTCT TCATGTTCAATTTCTAACATAACAAAGCAGGAAAGTTCAGCTCAAGTTCCTCCTCCCCCACCGCCACCTCCCCCACCACC TCCTTTGAATTTTGCATCAAGAAGTAACTCAGCGATGGTAAAACGAGCCCCACAAGTGGTGGAATTGTACCATTCACTAA TGAAGAGAGATTCAAGGAAGGACTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTGCAAATGTTCGTAGTAGCATG ATTGGAGAAATCGAGAACCGTTCATCACATTTGCTTGCTGTGAGTAGCTTTTTTCATCTTATATATCTAAGTTATTAATG GCATGTTTGGATAAAATTTTCTTTCGTCAGAGTTAATTCTCATTATAATTTTTTCTGACATCACAATCAATTGTAGAAGT ATTTTCAAGCATGCACCAAAGTTTCAGCCTTTTTGTGATAACTTTCTTTGATAATGTAGATGATTTTGACCACTAGATCA TATTTATTGTATAATTAATGCTTATTAGCATGCATTGGCGGAGTAGAATCTTCGGAGTTACTAATATCCCAACTATGAAG CCATCTCAAAGTCTTTTGTATCTTGTTTTGTTGAAGGGTCTTGCCCTACATCTATATTGCTAATAACTATCCCTTGATAT GCAGATAAAGGCAGATATTGAGACTCAGGGAGAATTTGTGAACTCATTGATTAAAGAGGTGAAAAATGCTGTTTATCAGA ACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTAGATGATGAACTCTGCTTCCTTGTAAGTTGCTTTTTTTTTGGAGAG CCAAATTGAACTCTGCTTCCGTAATTTGTTATTTTTGTGCATATACATGCCATTTGATATGATTATGGTTGTGTGCATCA AAGGTGGATGAGAGGGCTGTCCTTAAGCATTTTGAGTGGCCTGAGAAAAAAGCTGACACATTAAGGGAAGCAGCATTTGG GTATCAAGATTTGAAGAAATTGGAATCTGAAGTTTCCTCTTACAAGGATGATCCCCGGATACCTTGTGACATTGCTCTAA AGAAAATGGTTGCATTATCAGAAAAGTGAGTTACTCAAACATCTGTAAAGTGCTTTATGTCAACCCATAAAGAAGAAAAA TAAGAAAGTCTTTGAGGTTCTAAATTTAGTCTCTCTTTTATGTGTTTCTCTTGCAGGTTGGAGCGTACAGTTTATAACCT TCTTCGCACAAGAGAGTCATTAATGCGTAATTGCAAGGACTTTCAAATTCCAATTGAATGGATGCTTGATAATGGAATCA TTGGCAAGGTAAAATGTAACCTTCTCTGCATCAATCCACATAAAATGTAACGCTTGTTCAAATCCTTGGGTGTGTTTGTA TTTCTATCAGCGTACATTCCAAAGCAGTTTGATACTTTGATTTGCCAATCCATGTCTCTTGTGTCATTGAAGTGAATGTG CTTTTGACACATACACTAAGTTGTTGTTTTGGCAATGGCTTGGAATTTTTTGAGCATGTTACTTATTGATGTGGCTACCA ATAAATTAAGGATTAGGCTGACAAATAGACCTTTGTTTAGATAGTTGTATTATTCAATGCTACTGTTTTGGAAACTTAAA AAAGCATAATGTTCTATATGATGTTTAATAAAAGCATTTTATGTTTCTTCGCACGACATTTAATTCAACAATTTTTTTGT AGATAAAAATTGGCTCAGTTAAATTGGCCAAAAACTATATGAAAAGGGTAGCTATGGAGCTTCAAGCAAAGTCAGCATTG GATAAAGATCCTGCAATGGATTACATGCTTCTCCAAGGTGTGAGATTTGCTTTTAGAATCCATCAGGTACTTCAGCATCT TCAGTGTAAACTGAAATTAATTCTACAATTGATTGAAGTCAAAAACAATTTTGGAAAAAAGGTTTCTGGGAGTAGTTTCT TGATGTCAGAATTGATTATGATGATGAAAGTAAAGCTGATCCAAACATGGTATTAGCTTTCGATTCATAATGCTCTTTAT TATTCACAAAACCTGTTCTAGAATCGTTTTTTCTATTCTAAAATCAAACTGCATAAAAATGAACATGCTAGTGACTATTT CTCAATATATTGCAGTTTGCAGGAGGTTTTGATGCGGAAACAATGCACGCATTTGAGGAGCTTCGCAATCTTGCTTCTCT ACTTAACAAAACATAAGAGAATGGTGATGGGTTTCTCAGCTTACCATCTCAGTAAGCCATAACTAGTTAACCTCTGCATA GTTGCAATCTGGACTAGTTGTGTGTTTAGTCTATGATTGCGTTACATGAGAAATAGAAAAGATTGTTATTTATAACCAGG TCAAGTCTCTTTTGGAGAGAATAGCTGTATTATAAATAGCAGAACGAAAGCAAAATCAAATTAAGAAATGTAACATTATT TCCGTCCTAATTAACGGTCAATTTTGAAGAAAATTTTTTGTTCTTTGTATATATATGTCCACTT
CDS sequence (LotjaGi5g1v0042300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAAGATAATAACCCATTAGAGAACAGGTCCAAACCTTCAAGATTTTCTGATCAAAACCAACCCCCACAACCAAA GCTTCAATCCTCCAAAGGTAGCAGCAACATGACCAACAACAATCACTCAAAACCTAGGTTGTGGGGTGCCCACATTGTCA AAGGCTTCTCAGCTGATAAGAAGACCAAAAATCCTCAGCAATCAACGGTTCCAACCAAGAAACAGACCCTGACAACAACG ATTTCAGATGTTGTTGTTACAACCCAGAAGAATAACAACCCTTTTGTCCCTGCTCATTCCAGAGTCAAGAGGTCCCTCAT AGGTGATTTATCATGCTCCCTGAATTCCCAGGTTCACCCTCATGCGTTCCCTTCGCATAGGAGGCAATCCTCTACTGATT TGTTCACTGAGCTTGATCATATGAGAAGCTTGCTGCAAGAATCGAAGGAGAGGGAGGGTAAGCTGAATGCTGAGCTGGTG GAGTGTAAGGGGAAGCAGAGTGAGGTTGATGAGCTTGTGAAGAAGGTTGCTTTGTTGGAAGAAGAGAAGACTAGTCTCAA TGAGCAATTGGGTTCTTTGAAGAGTGTGTTGGAGAGAAAAGAGGAAGGGGTGAAAGGGGAACGCAGGGATTTTTGTTCTG TGCAGAATCTTGAGCTGGAGGTTGTGGAATTGAGGAGGCTGAATAAGGAGCTGCAGATGCAGAAGAGGAACCTCACTTGC AGGCTCTCTTCTCTTGAAGCTCAGTTGCCTTGTCCTGCCAACTCTTCAGAGAGTGACATTGTTGCAAAAATTAAAGCGGA GGCATCATTGCTCAGGCACACTAATGAAGACCTGTCTAAGCAAGTAGAAGGTTTACAAACAAGCAGATTGAATGAGGTTG AGGAGCTTGCCTACTTGAGGTGGGTGAATTCATGTCTGAGAAACGAGTTGAAGAATACATGTTCAGCATTGGAGTCTGAT AAGCCATCTAGCCCTCAATCTGTTATGAGCAATAGTGGAGATGATTGTGTCAGTTCTTTCTCTGATCAAACCAATAGGTA CTCAAAATGTAGTATTAGTACAAGTAGGTTCAGTTTGATAAAGAAGCCGAAAAAGTGGCCTATAACTAGTGACCATTTGT CGCAATTAGAGTGTCCAGATAGTCTCATTGAGAAAAATTGGATTGAACCTGAGGTAATGGGTAGAAGCCCCAGTAGAAGA CACTCTATCAGTGGATCCAATTGCTCAGAGGAAGAGATTCTCCTCAATAAGAGAAGACAATCTGATATTTTTGTATGTTC AAAAGAAATGGAAAAGGATTCAGTGCCATTATCTGTTCAATCTGGTTTGGAGATTATCCAAAGACCACAATGTTTTGGCA ACTTCCAAGAAGCTAACAAGCTTTTAGCTTCTTCAGATGTTGAGAAGAGGGCCCTACGCGTGCCGAATCCCCCTCCAAGG CCTTCTTCATGTTCAATTTCTAACATAACAAAGCAGGAAAGTTCAGCTCAAGTTCCTCCTCCCCCACCGCCACCTCCCCC ACCACCTCCTTTGAATTTTGCATCAAGAAGTAACTCAGCGATGGTAAAACGAGCCCCACAAGTGGTGGAATTGTACCATT CACTAATGAAGAGAGATTCAAGGAAGGACTCTTCAAATGGAGGACTCTCTGATGCACCAGATGTTGCAAATGTTCGTAGT AGCATGATTGGAGAAATCGAGAACCGTTCATCACATTTGCTTGCTATAAAGGCAGATATTGAGACTCAGGGAGAATTTGT GAACTCATTGATTAAAGAGGTGAAAAATGCTGTTTATCAGAACATAGAAGATGTAGTGGCATTTGTGAAGTGGCTAGATG ATGAACTCTGCTTCCTTGTGGATGAGAGGGCTGTCCTTAAGCATTTTGAGTGGCCTGAGAAAAAAGCTGACACATTAAGG GAAGCAGCATTTGGGTATCAAGATTTGAAGAAATTGGAATCTGAAGTTTCCTCTTACAAGGATGATCCCCGGATACCTTG TGACATTGCTCTAAAGAAAATGGTTGCATTATCAGAAAAGTTGGAGCGTACAGTTTATAACCTTCTTCGCACAAGAGAGT CATTAATGCGTAATTGCAAGGACTTTCAAATTCCAATTGAATGGATGCTTGATAATGGAATCATTGGCAAGATAAAAATT GGCTCAGTTAAATTGGCCAAAAACTATATGAAAAGGGTAGCTATGGAGCTTCAAGCAAAGTCAGCATTGGATAAAGATCC TGCAATGGATTACATGCTTCTCCAAGGTGTGAGATTTGCTTTTAGAATCCATCAGTTTGCAGGAGGTTTTGATGCGGAAA CAATGCACGCATTTGAGGAGCTTCGCAATCTTGCTTCTCTACTTAACAAAACATAA
Protein sequence (LotjaGi5g1v0042300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEDNNPLENRSKPSRFSDQNQPPQPKLQSSKGSSNMTNNNHSKPRLWGAHIVKGFSADKKTKNPQQSTVPTKKQTLTTT ISDVVVTTQKNNNPFVPAHSRVKRSLIGDLSCSLNSQVHPHAFPSHRRQSSTDLFTELDHMRSLLQESKEREGKLNAELV ECKGKQSEVDELVKKVALLEEEKTSLNEQLGSLKSVLERKEEGVKGERRDFCSVQNLELEVVELRRLNKELQMQKRNLTC RLSSLEAQLPCPANSSESDIVAKIKAEASLLRHTNEDLSKQVEGLQTSRLNEVEELAYLRWVNSCLRNELKNTCSALESD KPSSPQSVMSNSGDDCVSSFSDQTNRYSKCSISTSRFSLIKKPKKWPITSDHLSQLECPDSLIEKNWIEPEVMGRSPSRR HSISGSNCSEEEILLNKRRQSDIFVCSKEMEKDSVPLSVQSGLEIIQRPQCFGNFQEANKLLASSDVEKRALRVPNPPPR PSSCSISNITKQESSAQVPPPPPPPPPPPPLNFASRSNSAMVKRAPQVVELYHSLMKRDSRKDSSNGGLSDAPDVANVRS SMIGEIENRSSHLLAIKADIETQGEFVNSLIKEVKNAVYQNIEDVVAFVKWLDDELCFLVDERAVLKHFEWPEKKADTLR EAAFGYQDLKKLESEVSSYKDDPRIPCDIALKKMVALSEKLERTVYNLLRTRESLMRNCKDFQIPIEWMLDNGIIGKIKI GSVKLAKNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLASLLNKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 791 | 791 | 0.0 | ||
| PANTHER | 1 | 791 | 791 | 0.0 | – | |
| MobiDBLite | 1 | 46 | 46 | - | – | |
| MobiDBLite | 11 | 45 | 35 | - | – | |
| Coils | 162 | 196 | 35 | - | – | |
| Coils | 214 | 248 | 35 | - | – | |
| Coils | 261 | 281 | 21 | - | – | |
| MobiDBLite | 471 | 516 | 46 | - | – | |
| MobiDBLite | 496 | 513 | 18 | - | – | |
| SUPERFAMILY | 500 | 606 | 107 | 4.45E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0042300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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