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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0043900 |
| Transcript ID | LotjaGi5g1v0043900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GATA transcription factor; TAIR: AT4G26150.1 cytokinin-responsive gata factor 1; Swiss-Prot: sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22; TrEMBL-Plants: tr|A0A0S3RPP8|A0A0S3RPP8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0043900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7452659..7455356) extracted from Lotus japonicus Gifu genome v1.2.
ATATAAGAACCCTACCACCGTGTGTGATCAACCTCTTTCTCTCTTTAACTCTTTCAGTGGCTTTAGCTTTGTTATTCTGT AACCCTATATACCCTATCAAAACAGTTCTTCCTTAATTTCCTTTCTCTCTTTTTTTGTGCCAAAATTCCATCTATCCATG ACTCCTGTTTCTCTGAACCCACCAGGTCCTTCCATACAAGGTCAAAACCATCTCTTCAATTCTCTTAATAATCAGGATTA TCATGCTTCCTTATTTAACATACTTGATCGGAGGCAAGGCATAGGAATTGGAGAGTTAAGAGAAAATGATCACCAGGTAA GATACTATTTCTTTTCATTTTTCTCGACATATTTTGATCAAAAAATTTATGTCATAGTTTCTACTTTGAAGACTCATGTT TATTCTCATGAGGTAAGCAATATCCCCATCCCCAAAATATTCATCATGTGGTTCTTGCAACAATTAAGAACAACGTTTGG GGATCATGATCAATAAACGTTCATGTACGTTATTTGCTTTAATCAATTAATTGATATAGGTAAAGCTATATAATGATGAT ATGATGCTTATGATTTGATCTTATTTCCAAGCTTAATTTTAAGATAATCATGTGTCTTGATTTCATTAAATTTTGGCATG TGTTCGTCCCGGCTTTTCTTTCTTCGAATCAATTCTTAAACTTATAAACTATTCACAAAATTGATTTTGCCGGTAAAATT AATTGTAGAAGGATTTTCAAACATGTATTTAATTTCAGTCTTGAATTTTTTTCATATAATTCAATTCATTTTTTTTATGA TAACATGCTATGCTAATAAATAAAATAAAATTGAAACCTAGTCATGTCATACATCTAATTAGTGTTATAACCTTTTATCT TTTAATGCTATGCTGAAGTACAAATAAAACCTTGATCTATTTTTCATGCCCATGTAATATGTTATATTCTTGATCTCCTT ACTTTAGGACGATAAGCTGGTGGTATGGCATGATGGATCATCATCATCATCAAGCAGCAATCATCTTTACAATTCGACTT TTATTTCACCTCAGCCAGTTATGGACAACCCAAGCAGCAGCACATGTGACCCAAATTTATCATTCTCCAAAATGGAGGAG GAAGACATCAAAAACGTTCACGGGTCTGCAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGTACTCC AGCCACTGACAAAGCAAACAACTCTACTACTATTCCAATTAGTCCAAGAATCCAAAATCAAGGGCATGAAAACAGGTACA GCCAAAGAAGCCCTCGTAATAACAACAACAGCAGTAACACCACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCA CTTTGGAGGAGTGGCCCTAACGGTCCTAAGGTGTGTTAATTAATCTTCTCCCTTTTCTCTTTCATGTATACCATATCATC AAGATGATATATTCTCACCACTCTTTATAATTACCACATATCCATACCCAAACTTGCAAACACAGTTTTAAACTAAGGTT GCGAATACGGTTTGGGTCGTGTCGTGATCCTTGATATCATGAAAAAATTTATGAAAATGTGGTGGATGTAGGGATCTGAC TTGACTGCAGTCAAATTTCAGTACAATCATTGCAGTTAAAGAATTTCAACATACAATTAGAAGAAAATCAAGCGATTTTT TTTTTGAAAGTCATGCGATTTTGATTTCAATGTAACAAATTATTTGTAATCATATCCTAAAATTTTAAGTTCAAAAAAAA TATCCTAAAATTTTAAGCTGGTTGATTTTCATTAAATGGTTGAGATTCTTTAACTGCAACTAACGACTATATCCAAAGAT ATAGCCACAATTGCAGTTGTAGAAGCCTTTAAAACCATTTGTCCATGTCACAACCGTATTTGCACACGGTTATGAACCTT AATTTAAAACCATGCTTGCATAGTTAAAAATGGAGAGTTGGGGAAATTTTCTCCCTACTTTAACTATGCAAGTGAGGTGT ATGAGCATGCACCTTAAGGGAAAAAAAGTAGTGTGTGAATTATTCATTTTTGCATTGTTCATGACCTTTATTTGCTTGTG CAGTCGCTTTGCAATGCATGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCTAATGGTTTGGCCAC TCCCATAAATACAGCATCAACAAAGACCAGAGTGCATCATAACAAGGAAAAGAAGCCTCGTGCAAACCATTTTGCTCAGT TCAAGAACAAATCCAAATCCACTTCAAGTAATGCAGGTTCATCTCAAGAGACAAAGAAGCTTGAATGTTTCAAGGACTTT GCAATAAGTTTGAGGAACAACTCAACTTTTCAGCAAGTGTTTCCAAGGGATGAAGTAGCTGAGGCGGCGCTGCTTTTGAT GGATTTATCTTGTGGTTATGTTCACTCTTACTAATTAGAAAGTTTTGTCATGTTAGTGTTTTATTTTTCACTTTTAGAAT AAAAAAGATTTGGAAACTATTTGTTTGGTTGTGAGTTGTGAAATCAAGCTGTGATGTACTGCAGCACAGCGAAAATTAAG CTTGGCTGCATTACAGACAGCTACTATTACATTTGTTGTCACTAAGAAAGAAGTTTATGTTTAGTTTCATATTATAGCTT GAAATTGTGTGCTTAAGGGGCAGAATGTAATGGTGATGTGTTTACCGACCTAATCTAA
CDS sequence (LotjaGi5g1v0043900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCTGTTTCTCTGAACCCACCAGGTCCTTCCATACAAGGTCAAAACCATCTCTTCAATTCTCTTAATAATCAGGA TTATCATGCTTCCTTATTTAACATACTTGATCGGAGGCAAGGCATAGGAATTGGAGAGTTAAGAGAAAATGATCACCAGG ACGATAAGCTGGTGGTATGGCATGATGGATCATCATCATCATCAAGCAGCAATCATCTTTACAATTCGACTTTTATTTCA CCTCAGCCAGTTATGGACAACCCAAGCAGCAGCACATGTGACCCAAATTTATCATTCTCCAAAATGGAGGAGGAAGACAT CAAAAACGTTCACGGGTCTGCAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATGAGTACTCCAGCCACTG ACAAAGCAAACAACTCTACTACTATTCCAATTAGTCCAAGAATCCAAAATCAAGGGCATGAAAACAGGTACAGCCAAAGA AGCCCTCGTAATAACAACAACAGCAGTAACACCACTAGGGTTTGTTCGGATTGTAACACAAGCAGTACCCCACTTTGGAG GAGTGGCCCTAACGGTCCTAAGTCGCTTTGCAATGCATGTGGAATTAGACAGAGGAAGGCAAGAAGGGCAATGGCAGAAG CTGCTAATGGTTTGGCCACTCCCATAAATACAGCATCAACAAAGACCAGAGTGCATCATAACAAGGAAAAGAAGCCTCGT GCAAACCATTTTGCTCAGTTCAAGAACAAATCCAAATCCACTTCAAGTAATGCAGGTTCATCTCAAGAGACAAAGAAGCT TGAATGTTTCAAGGACTTTGCAATAAGTTTGAGGAACAACTCAACTTTTCAGCAAGTGTTTCCAAGGGATGAAGTAGCTG AGGCGGCGCTGCTTTTGATGGATTTATCTTGTGGTTATGTTCACTCTTACTAA
Protein sequence (LotjaGi5g1v0043900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPVSLNPPGPSIQGQNHLFNSLNNQDYHASLFNILDRRQGIGIGELRENDHQDDKLVVWHDGSSSSSSSNHLYNSTFIS PQPVMDNPSSSTCDPNLSFSKMEEEDIKNVHGSAKWMSSKMRLMKKMMSTPATDKANNSTTIPISPRIQNQGHENRYSQR SPRNNNNSSNTTRVCSDCNTSSTPLWRSGPNGPKSLCNACGIRQRKARRAMAEAANGLATPINTASTKTRVHHNKEKKPR ANHFAQFKNKSKSTSSNAGSSQETKKLECFKDFAISLRNNSTFQQVFPRDEVAEAALLLMDLSCGYVHSY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 3.2E-97 | – | |
| PANTHER | 1 | 309 | 309 | 3.2E-97 | – | |
| MobiDBLite | 130 | 176 | 47 | - | – | |
| MobiDBLite | 131 | 176 | 46 | - | – | |
| Gene3D | 168 | 214 | 47 | 2.7E-13 | ||
| ProSiteProfiles | 169 | 205 | 37 | 13.125 | ||
| SMART | 169 | 220 | 52 | 4.9E-17 | ||
| SUPERFAMILY | 169 | 209 | 41 | 1.47E-12 | – | |
| CDD | 174 | 228 | 55 | 1.62339E-13 | ||
| ProSitePatterns | 175 | 200 | 26 | - | ||
| Pfam | 175 | 209 | 35 | 9.7E-17 | ||
| MobiDBLite | 227 | 261 | 35 | - | – | |
| MobiDBLite | 246 | 261 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0043900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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