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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0044000 |
Transcript ID | LotjaGi5g1v0044000.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Glycine dehydrogenase decarboxylating protein; TAIR: AT2G26080.1 glycine decarboxylase P-protein 2; Swiss-Prot: sp|P26969|GCSP_PEA Glycine dehydrogenase (decarboxylating), mitochondrial; TrEMBL-Plants: tr|I1M923|I1M923_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0044000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:7469287..7471168) extracted from Lotus japonicus Gifu genome v1.2.
GAACTTGGTTCACGACACTCTTCAATTACATCTTTCTTGTATTTATATATCTATTTCCGTAATGAAGATACCCACTGGTG GAATTCCTGCCCCTGACAACTCTCAACCACTTGGTACCATCTCTGCTGCACCTTGGGGTTCAGCACTCATCTTGCCAATC TCTTACACTTACATTGCCATGATGGGTTCTCAAGGACTCACAGATGCATCAAAGATAGCCATTTTAAATGCAAACTACAT GGCCAAACGATTGGAGGTTTGTGCTTAGTCATAAATTATGTTACATGAAAAGTGTATGTATCATTGTCTTTCTGCATATG AACCTTGATTTTACATATACTTTGACTTCTACAGAACTATTACCCTGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTC ATGAATTCATTATTGACTTGAGAGGCTTTAAGGTGATCCATTTGATAGTTGCAGTTGTTTTTTTCAATTGATCACCGGTG TTCAAGCTTTCATTGAATGTAAGCTATTTCCATTGTAGAATACTGCTGGAATTGAGCCCGAAGATGTCGCGAAACGCCTC ATGGATTACGGGTTCCATGGACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCCACTGAAAGTGAAAG CAAGGTATGGCCTTGCTGGGATTTTTTTTATCCTTATACCTTTTTTCTTGTTTTGTTGTTTCTCCTGTGTAATTTCTTCT TTAATTCAACTAAACATCATTGCAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATAAGACAAGAAATTGCTG AGATTGAGAAAGGAAAGGCTGACATTAACAACAATGTACTCAAGGTAAAATAATTTCTCTCATTTATATGATATTTGATA AGAAGAAAAATACTTGATTTACCTCATGTTTGGAAACCCTTCTACAATTGAATCTGAAGTTACAATCAATTATGAGGAGA AGTTTCTATAAGTAGCTTCTAAGTTTTAAAATTGTTTCTGATGAAAGAGAAGTTGATCCAAACATGCTATTAGTTTGATT ATTTAATAAAATAGACCATTGGCTTCATATTTTAAAAAAAATTCAGCACAAGCTCACAGTTCTTATCTCTAATTTTCTGC AGGGAGCTCCTCATCCACCATCATTGCTCATGGCAGATGCATGGACAAAACCATACTCCAGGGAGTGCGCAGCCTTCCCA GCTTCATGGCTCAGGGTTGCCAAGTTCTGGCCTACCACAGGTAATCATGTCCCTCATCTAACTTCTACATAAATACCTAT TACTTATAAGAATTTTCTCCTTAATTAGGAACCAAATACTTATCATTTGAAAAGCTCCCATAAACTAGAAGCTAATCCAA ACAGGGTCAGCCTAATTGGCCCATACCATTGAATGTTTAAACTTATGGTTATGCTTGTATGTTTGGAAACTCTTCTACAA TTGATTCTAAAGCCAAAATCAATTATGGGGAAAAGCTTGTATTTGCCAGAATTGATTATGAAGAAAAATATGCGGATTCA CGCTAGTTTTAATTCACGTTAACTCTAATACCCGCCTCCATTTTCGTCTCTATCAAACACAATCCTTTTTCTCTGCAATA ACACAATTGACGTTAGAACAAATGTTTTCTGAGAATATTCCACCAGGGCACATTCTTATTTAACTATGGATTAAGCTGGT GCTTGATTGTTTGTAATCCTTATACTACACAAAGTTGTGGTCTGCATGATATTTTTGCTTGACTAATGCATGGACTAATA TATGTACAATGTGGTTCCTTGTATCAGGACGTGTTGACAACGTGTATGGTGACCGCAACCTCATCTGCACCCTTCTCCCA GCATCACAGGCTGTTGAAGAACAAGCTGCTGCAACAGCTTAG
CDS sequence (LotjaGi5g1v0044000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATACCCACTGGTGGAATTCCTGCCCCTGACAACTCTCAACCACTTGGTACCATCTCTGCTGCACCTTGGGGTTC AGCACTCATCTTGCCAATCTCTTACACTTACATTGCCATGATGGGTTCTCAAGGACTCACAGATGCATCAAAGATAGCCA TTTTAAATGCAAACTACATGAACTATTACCCTGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCATGAATTCATTATT GACTTGAGAGGCTTTAAGAATACTGCTGGAATTGAGCCCGAAGATGTCGCGAAACGCCTCATGGATTACGGGTTCCATGG ACCAACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAGCCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGT TTTGTGATGCTCTTATTTCCATAAGACAAGAAATTGCTGAGATTGAGAAAGGAAAGGCTGACATTAACAACAATGTACTC AAGGGAGCTCCTCATCCACCATCATTGCTCATGGCAGATGCATGGACAAAACCATACTCCAGGGAGTGCGCAGCCTTCCC AGCTTCATGGCTCAGGGTTGCCAAGTTCTGGCCTACCACAGGACGTGTTGACAACGTGTATGGTGACCGCAACCTCATCT GCACCCTTCTCCCAGCATCACAGGCTGTTGAAGAACAAGCTGCTGCAACAGCTTAG
Protein sequence (LotjaGi5g1v0044000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKIPTGGIPAPDNSQPLGTISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMNYYPVLFRGVNGTVAHEFII DLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRQEIAEIEKGKADINNNVL KGAPHPPSLLMADAWTKPYSRECAAFPASWLRVAKFWPTTGRVDNVYGDRNLICTLLPASQAVEEQAAATA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 10 | 230 | 221 | 4.5E-119 | – | |
PANTHER | 10 | 230 | 221 | 4.5E-119 | ||
SUPERFAMILY | 21 | 216 | 196 | 6.33E-29 | ||
Gene3D | 35 | 166 | 132 | 8.9E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Glycine dehydrogenase (decarboxylating) activity | Catalysis of the reaction: glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2. | ||
Biological process | Glycine catabolic process | The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0044000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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