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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0047800 |
| Transcript ID | LotjaGi5g1v0047800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT5G26170.1 WRKY DNA-binding protein 50; Swiss-Prot: sp|Q8VWQ5|WRK50_ARATH Probable WRKY transcription factor 50; TrEMBL-Plants: tr|I3SPD2|I3SPD2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0047800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8028833..8030612) extracted from Lotus japonicus Gifu genome v1.2.
TTTCCTTTTCACTACTTTTGGTATACATGTCATTTCTACTAGTCATTGCCTTCGAAACTTCCTATTATGATTCATAGGAA GGTCACCTTGAAGTTGCCTCACTAAACTATATATGGCTGTTATATATTGCTTGAGCCGTGATGCTTTCTTTTCATGCCAA TTGCAACAAAATGGCAGAAAGAAATCCAAGGCCATCATCAGATTATTCACCTGATAGTGATTTAACCAGCCAGTGGCCTA ATTTTGAGCTCTCTGAGTACTTGGAATTTGATGATAATCATTGGCTAGATGATGATCGAGAAGAGTCATTTGCTTCTAAG CATGTTCCAAATCAGGTTTTTCAAGCCAATGAAGTAGGTGATTTTGGAGGAGGTGGCAGCAACTTTGAGGGGTCTTCTAG AAGTAAGTCTAGTTCCCGAGATTATGGAAGTGGGCTTTTTATTTTATAAATTGGGATGTTTATAGCCATTTTATAAATCA ATGAGTACTGATTCAATTCATTTCTAGCAATTGATAAGAACATCAAGGGAGCTAGAGAGAGAGTTGCATTCAAAACAAAG TCAGAAGTTGAAATACTAAATGATGGGTTCAAATGGAGGAAGTATGGCAAGAAAATGGTGAAGAACAGCCCCAATCCAAG GTATAAATCCCCTATGATACAGTTAGCCTGAAAAGTTTAGGATATGTTACTTTAGTTATTGAAACATGAAAATTGTTATA TTCATCCTTGAAAGAGATAAAATTAAGTATTCATTTTTAGTCCATTTAAATTTGAACGATTTTTTAATCTTTTAAGAATA TTGATCGTACTTTATCTGCTATGATTAAATTGAACTTTTTTTATCATTTAAAGTTCAAAGTGACAATTCTCATGAATCAC CTTCAAAAGTTTTCATAGCCAAAGTGATGATATATTCAACGATAATAGAGTCAACATGAATCCTCTGCAGCTATAAATTC TTAATTCTTTATACACCGGTCATTTTGCTGTTGCGAGTATACTTATGATTATGAGTATTTGATAACAGGAATTACTATAG GTGCTCAGTAGAAGGATGTCCTGTTAAAAAGAGGGTTGAGAGAGATAACGATGATTCAAGATATGTAATCACAACCTACG AAGGCATGCACACTCATCCGAGTTCTTGCTAGCATGGTGGAATATGAAGAAGCTTTGGAAGTGCGTTTTGCTGGTCACAA CCACCATAGTTATTCTTACTAAACCTTCATGAGCCCTAAATTTTGTGTTATAAAGCATTCAACATTGTTAGACTTCTCAT GTGTACAATTGAACTGAAATTAAAGGGCTGATATTGTGGGTTAATTATGATCATCCACAATCATATTACCTGGGAATGTA GGTAAATGTGAACTGACAAGTAATTCAAAAAGGAAACCCTGAATCTATTTGTGGATAAAAGAGGACAAACGATCTTTATC TTGACTCTAACGCTATATACCTGGGATGTAGGCTTGGTGTTCTAATTGTTTTGCCTGATGCCTAACGCCTATTGCGGTGG CCGGTAAAAACTTTACCAGTTTACCTCCTCCACTCACCAAGAATTAAGAACATGTGGGAAGGGAAACCATGGATGCAAAA AGTCCAACTTACATCCGACTATGATTTTACTCACTAAGAACTTACCAAGTCCGATCCACGTGATGTTTAATTCACCCCAA ACAAACTATGCCTATACCAAGCCCAAATTTTTTGAAAGAGAGAGATACAGTGAAAGTTATGAGATTAAGAAAACTACTAA GGTAAAAAGCTGTCACAGTT
CDS sequence (LotjaGi5g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTCTTTTCATGCCAATTGCAACAAAATGGCAGAAAGAAATCCAAGGCCATCATCAGATTATTCACCTGATAGTGA TTTAACCAGCCAGTGGCCTAATTTTGAGCTCTCTGAGTACTTGGAATTTGATGATAATCATTGGCTAGATGATGATCGAG AAGAGTCATTTGCTTCTAAGCATGTTCCAAATCAGGTTTTTCAAGCCAATGAAGTAGGTGATTTTGGAGGAGGTGGCAGC AACTTTGAGGGGTCTTCTAGAACAATTGATAAGAACATCAAGGGAGCTAGAGAGAGAGTTGCATTCAAAACAAAGTCAGA AGTTGAAATACTAAATGATGGGTTCAAATGGAGGAAGTATGGCAAGAAAATGGTGAAGAACAGCCCCAATCCAAGGAATT ACTATAGGTGCTCAGTAGAAGGATGTCCTGTTAAAAAGAGGGTTGAGAGAGATAACGATGATTCAAGATATGTAATCACA ACCTACGAAGGCATGCACACTCATCCGAGTTCTTGCTAG
Protein sequence (LotjaGi5g1v0047800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSFHANCNKMAERNPRPSSDYSPDSDLTSQWPNFELSEYLEFDDNHWLDDDREESFASKHVPNQVFQANEVGDFGGGGS NFEGSSRTIDKNIKGARERVAFKTKSEVEILNDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDNDDSRYVIT TYEGMHTHPSSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 11 | 170 | 160 | 7.3E-73 | – | |
| PANTHER | 11 | 170 | 160 | 7.3E-73 | – | |
| MobiDBLite | 13 | 28 | 16 | - | – | |
| Gene3D | 95 | 172 | 78 | 2.0E-31 | ||
| SUPERFAMILY | 104 | 169 | 66 | 2.35E-28 | ||
| ProSiteProfiles | 106 | 171 | 66 | 30.067 | ||
| SMART | 111 | 170 | 60 | 4.5E-37 | ||
| Pfam | 112 | 169 | 58 | 2.7E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0047800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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