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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0051000 |
| Transcript ID | LotjaGi5g1v0051000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G80840.1 WRKY DNA-binding protein 40; Swiss-Prot: sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40; TrEMBL-Plants: tr|G7I7M7|G7I7M7_MEDTR WRKY family transcription factor; Found in the gene: LotjaGi5g1v0051000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8647568..8649656) extracted from Lotus japonicus Gifu genome v1.2.
TTCCTGTCATTTCCTGCAACTTTCCTTCTCTCGCAACTATATATTTCTACACCCACTTTTGACAGCTCAACCAGTTTAAT TAATTCACTCTCAGCAGAACTTGCAATGGAATCAACATGCATAGATACTTCACTCAATCTTAACGTTGTTCCTTCTCTGA ACATGGTTCGTATACATAAATAAATAATCTTCTCTTTTTTCTAAGTTCCTTAATTTCTAACTCTAAATTTGGAATTTTTG TGACCAGGATGAGTTTTTGGTTGAAGAGTTGCATCGTCTAAGTTGTGAGAATAAGAGGCTGAGTGAGAGTCTGACCCACA TGTGGGAGAACTATGAGGCTATGCAAAATCAGTTGAGCCAATTGGTGAACAAAAAAATTGAACACCAAACACAACAATCA CGGAAGAGAAAAGCTGAGTTTGAAAGTTGCATCAATAATACTGAGTGCAGCACCAATATTACAGAGGAGGAGTCAGTAAT CAAAAGGACCAGTGATACCATGAATATGATCACCTTGCCCAAGGTTTCCAAGGTTCTTGTGAAGACAGAAGCATCTAATA CTAGCTTAGTAAGTTTCCTAATTTCAAGTTTCTTGCAAGTAATTAGCTTGTAGTTTTGATGCATATATAAATTTATGATG AAAATCTTGAGACACATTTGCTGTCCCACCAAATGGGTTGGTTATAAACTTACAATGATAATTTTTAATAGACATGACAA AATGAGAAAAATGGGACATGAAATGAGGGGCAAATGATATTTGATCCATAAATTTAGCATTGTGAAAGAGGGATGAAAAT CTTGTGTTCCTAAAGACATACCAAAATATTATTGGTGCTGAGTTTTATAGCTGTTATTTTAAGTAAACTGTGAAGCTTAA TTTCAAGTACTTACTGAAAATTCTGAATATGATTTTGGGCATATAGTACGTGATGGATGGATATCAATGGAGGAAGTATG GTCAGAAAGTCACAAGAGATAACCCCTCACCTAGAGCCTACTTCAAATGCTCCTATGCCCCAAGCTGCCCAGTGAAGAAA AAGGTAAATTCCTTCATAATTGGATCACGAATATTTTGATACTTATAGCATGTTTGGTTCAACTTATTCTCTTTTTTCAG AATCAATTCTGTTATCCAGGAGCTACTCATCACAGCTTCTCTCTAGAATTGATTCTGACTTTAGAACCAATTGTCATATC TTGATCCCTTCTATCATTATTCATTGCCATACATCAATTAGGTGCAGAAAAGCTTAGATGACCCTACCATACTGGTTGCA ACGTATGAAGGAGAGCACAACCATGGTCATCAGCAGCTAGCTAAAATTCCATTGGTGTCAAGGCAAAGTGAAGAAGGCCC TATGGGGTCAGTTCATGTTTCCTCACCTACATCCATTATTGACAAGGTCGACAATGTTCAAAAGTCATCATCTATTCGGC AGTTTCTGGTTCAACAAATGGCTACTTCTTTGACAAGGGATCCCAATTTCACAGCAGCACTTGCCACTGCCATTTCAGGG AGAATTCTTGACCAGACTTCTATGCCCAAATGGTGAATTAACACATGAACTGTGTTATTTTACTCTGTTCATTTACAGAG GCTGCAAAGTCAAGTAGCGAGAGGAATGTATATACTAAAAAATTAAAGGGAAAAGAACAAGTTGAAATTCTGTTCCTCTT AGTGTGCAGCAGCCCAAGCTAAATATCGGATTTTTCTTTAAGAAATAAAGTTGTACATTTATTTTTCCCTTCACATCCAT TTTGTTTGGGTGTTGAATTAGCGAACCTTATAGAGTGGACATTAAAGATGGTACCTAGAAGGTACTCTGACACTCAAATT GGTCAGGCACGGACAGAATTAGAATTAGGGTAGAATAAGTGTGTAGCTGAGAGATGTCTCATGTTTACGTATACATATGT TGGGTTGTTCTAATCTCGTAGAGAATTATCTAGCAATATGATATGATAATAGATATATCTAGTACCTAGTCATATTAAAT TAAATGTTACCAAATTCGTAATCTTTATTCTCTTCAATTGGGCCAATTTGTTAGACTTATAAGGGGGCGTTTGTTTCACG GATTGGAAA
CDS sequence (LotjaGi5g1v0051000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCAACATGCATAGATACTTCACTCAATCTTAACGTTGTTCCTTCTCTGAACATGGATGAGTTTTTGGTTGAAGA GTTGCATCGTCTAAGTTGTGAGAATAAGAGGCTGAGTGAGAGTCTGACCCACATGTGGGAGAACTATGAGGCTATGCAAA ATCAGTTGAGCCAATTGGTGAACAAAAAAATTGAACACCAAACACAACAATCACGGAAGAGAAAAGCTGAGTTTGAAAGT TGCATCAATAATACTGAGTGCAGCACCAATATTACAGAGGAGGAGTCAGTAATCAAAAGGACCAGTGATACCATGAATAT GATCACCTTGCCCAAGGTTTCCAAGGTTCTTGTGAAGACAGAAGCATCTAATACTAGCTTATACGTGATGGATGGATATC AATGGAGGAAGTATGGTCAGAAAGTCACAAGAGATAACCCCTCACCTAGAGCCTACTTCAAATGCTCCTATGCCCCAAGC TGCCCAGTGAAGAAAAAGGTGCAGAAAAGCTTAGATGACCCTACCATACTGGTTGCAACGTATGAAGGAGAGCACAACCA TGGTCATCAGCAGCTAGCTAAAATTCCATTGGTGTCAAGGCAAAGTGAAGAAGGCCCTATGGGGTCAGTTCATGTTTCCT CACCTACATCCATTATTGACAAGGTCGACAATGTTCAAAAGTCATCATCTATTCGGCAGTTTCTGGTTCAACAAATGGCT ACTTCTTTGACAAGGGATCCCAATTTCACAGCAGCACTTGCCACTGCCATTTCAGGGAGAATTCTTGACCAGACTTCTAT GCCCAAATGGTGA
Protein sequence (LotjaGi5g1v0051000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESTCIDTSLNLNVVPSLNMDEFLVEELHRLSCENKRLSESLTHMWENYEAMQNQLSQLVNKKIEHQTQQSRKRKAEFES CINNTECSTNITEEESVIKRTSDTMNMITLPKVSKVLVKTEASNTSLYVMDGYQWRKYGQKVTRDNPSPRAYFKCSYAPS CPVKKKVQKSLDDPTILVATYEGEHNHGHQQLAKIPLVSRQSEEGPMGSVHVSSPTSIIDKVDNVQKSSSIRQFLVQQMA TSLTRDPNFTAALATAISGRILDQTSMPKW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 265 | 245 | 7.6E-88 | – | |
| PANTHER | 21 | 265 | 245 | 7.6E-88 | – | |
| Coils | 49 | 69 | 21 | - | – | |
| Gene3D | 113 | 190 | 78 | 7.6E-27 | ||
| SUPERFAMILY | 127 | 189 | 63 | 2.09E-24 | ||
| SMART | 129 | 189 | 61 | 1.5E-32 | ||
| Pfam | 131 | 187 | 57 | 6.4E-24 | ||
| ProSiteProfiles | 131 | 190 | 60 | 24.593 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0051000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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