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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0051100 |
| Transcript ID | LotjaGi5g1v0051100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G80840.1 WRKY DNA-binding protein 40; Swiss-Prot: sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40; TrEMBL-Plants: tr|A0A151QX95|A0A151QX95_CAJCA Putative WRKY transcription factor 40; Found in the gene: LotjaGi5g1v0051100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8659485..8663386) extracted from Lotus japonicus Gifu genome v1.2.
TAGGCGCCTTGTTATTATTAGCTCATCGTCCTTTCAATTCATAAAATAAGAGAAACTCTTTCACCTGGAATTGGAGGTCG TTCAAGTTCAACCTATCCATCATAATGGATGAAAAGGTAACTAACTGAGTACCTCTGCTATACTTCTTATTCTTGTTTCT TTATACCCAAACATACATGTGACTGCATATATTCTCAAGGGAAAAAAAGTAGATATACAAAAACTCTTTCTGAACAAACA ATTTTTTCTTTGTTTATGTTAATAGGAGAGGTATTAGAGGAAAACTTCTTATTGTGATAGATGAGATATGTGAATCTTGG ACACCACCTGCACCTATCGTTTGCAGCTGAGCGGAAGGTTCTGATTGATATCAATTAATAAGAACTTGAGAGAACTATAT CACGAAATATGGCGGTTGTAATTGGAGAGCCCAAAATGTATAAAGTATAAATCACAAACTAGAATCTCATATTTTCATTA TGAGACTCAAGTCTCGTACCTTGCAGTTGGTCCTAACGTAGGATGAAAGCATTATGAAGCTAATTGTAAAAGCTTAATTA TAACATTAATCTTTATCTGATCAGGAGGAAACTCTTCAAGCAAAGCTACAACAAGTGAGGGAGGAGAACAATGCTCTAAG ACTGATGCTTGAGGTTCTGAGCAGCAAGTGCAGAAAGCTTGAGTCCCAACTTGAAGAGATCAACAAGAACGAACAGAAGG GTATCAGTTCATATCAAATTGAGTCTCTGTCTAACCATGTTTCTAGCAAGAGAGCAAGGCTAGAATTTCCCACAGTCAAA AAGCCATTGGAAATCTTCTTCAGAACCCTCCCCAATGATGACACTTTGGTAAGCAATTTAGCTGTTAGGGTTCCAAATAT TGGGCATCGTTGACTTGTAAGTATGGTCTACTTTATTTCTATATTTTAGTTTAACCGTCTATCTTTTATTATAAATAAGA GCTCTCTCATCAGGGTGGTATTATTATTGAGTTTTTCTTTTTAAGTTGGAAGTATTTTTTTGTAAAGAAGGAAATCAATC TTTGTGTCTTTTATTTTTCTCATTTAATATCAGTCTTTTATCCTAAAATTACACTTTCGTCCCCTATCTTTTGTTGTTTG CTTATTTGGGTTTTCCCAGCCCTAACATTAGGATCATCCTTATTTTCATTAATTAAAATTACTTAATTATGTTCAAATTC AACTATGAAGATTCTAATAACACTTTTCCTTTGATAATTTAGTTAATTAAAGATGGATATCAGTGGAGGAAGTATGGGCA GAAGGTTACCAAAGACAATGGTTCTCCTCGAGCTTACTTTAGGTGCTCCATGGCTCCCACTTGCCCAGCCAAAAAGAAGG TATACTATACAAATATGTCCTACATTCTATTATTTATTTTCTCTGAAGCAATAAAGATGATTTTAAGTGATTAAGATGAT TTATTAATGTAGGAACAAGTTTAAAACCATGTATGGATCATGATCATCTAAAAGGAAACGTGTCATCTGATAATGTTATG TTAAAATCTTGTATGAATCACTCTACTGATATCTATTAAATAGTTAGAACTCTATAATATGTATGTATGAAGTCCGAGAT AAGATGAATTTTCACATGAAAATAAATTTACTTAAACATATCATTTTCAGTCACAAATTTTCACAGTTGGCAATTCTGAG ACTAATCATTCACAATCCTCTGACAACATAAAAGTAGTAGCAGGCCGGTATATATGTTTGATCGAATCCTTAACTACTTA CTTAAAAAGACAAGTGTTGATCCACTTACGTTAGTCCACTTGTTTAAACTTATTAGATTTGATAGACTTACTTATTTAAG TAAATATAAGTAATACAATATTATTATTAGTATTACAATTATATTAAGTTTTCAGCATAAAGTATTCAAATCATATGATC TATTACTATTGTACAAAAAAAAATATGATCTATTACTAACAAGTTACTAGTCTAGTGGCAGATAACTAAAACTCTTATAA GAAGAGATAAGTTTAAAATCTAAGAAAGTTATTTGTTAGAAGAGATTAAACAGACATTAGTCATACCCCTCAAACAAGGT GAGGACACCCAAGACAAAAAAAAAATCACATGATCTATTAAAAGCTTATGTTCTTTGATGTACTAACTATTTGAGCCTAT AAAATTATGGATTAAATTTCTATACACTGACTGTATAAAGAATTTTATACATACATCTAATCATATCTATTTATTTTTCT TTTTAAATATAATTGAATGACAATGTCAATACATTATAATTAAATTCTAAGATTATTTACTATAAGTTTGTATAAAAGTT GGCAAGCACTAATACTGTGGTTCTCCCTGAAACAATAAATCATAAATCATGTATCAATATTAAACAAACATACCCTAATT ACCAGTAAGATGTTGGTGATAAGCAATTTAGACATATGTAAGAATGAGAGTACAAGTTTGAATTTTGGGAAAACATTTGC TGAAAGGGACATGTAACCACGTCACGAACGAGTGACGACATCGCTCAAGTAAAAAAAAAAAAAAACCTTAGCGATAAAAT TATGACTCATTTATAAGTCTTAGTATAAAATAAACTTTCAAAACCATGTTAAGCTTTTAAAAAGACTAGACCATAGCGAA TTATTGAATCTAATTTAAAATGACCTACTGTATAGCAGAAAGCGAAATCACAAGTCTTTTTCTTTTTGACAAAGAAATCA TAAGTCTTCGAAGTGCAATTTTGATTGGATTATTGTAACAGCAATAGATTAGAAGCCCCTAAAAAAACAACCACTTCTAC CTTTTCAAATAACATAAGTTAAAATAAGCTTTCATACTATTTATGTCGTGTCATATAGCATATGACCTATTAAGATTAAA AAAAAAAAAAACCCATGTCATATCCATTTCTTTATGATGATTAAGTAATGCTGCCTTATTATATGGTTTTGAATTATTTT CTTTTTTTGGTGTGTTTTGATGAATTGTGGTCCAATAGACTCTAACCTTAACTGAAATTACTCATTTAGGTGCAAAGATG CACACATGATAGGTCTATCCTTGCTGCAACTTATGATGGAGAGCACAACCATAGTGCCCTTGATGACTCATTCAGACCAT CTTCATCCACACCAAAAGGCTCATCAATAGCTAATAATTTATCTCCAACAATTATACCATATGATAAAGAAGCTATGAAC AATGTCTTTGCTATTTCTGATTGGGCTCAAACAAATGCTAGACTCTATGAGGATGTCATTCCACAGCATGTCCATGGCAG CAACATCAAAATTGAAGATTATATAAGTTCTGTGATCAAAGATCCTGATTTCACTACTGCATTAGCGGAAGCAGTTGCCC ACATTATCACAGGTCAACATAAGCGACAAAGTCTAAATCTCAATTTGGATATTCCAAAAGAGTGAAATGAAGGGGGTTTC TCTTTGTACCCCCATTTTTTCCCACTATACCACCACAGATAACTTTCGGAAAGAAATTAATTTCCAGAAATGATTCGCTT CCGGAAAATAATTCCTGGATGCATGTGTTGGTGCAGTGAGAGAAAAATGGGGTTTCACCACCCCACAATCTCAATGCCCA TATGCAAGTAAAGCGTAAAGAGATTGAATTTTACGTACTTAAATAGCAGTCAAATTGCAATGAAGATGAATTATAGACCA GTGAGTAGTAGACTTTTAGCACTGTAAAGTGAGCAAATTTTCCTTAGTTTGTATTCAATGCATAATGTAGGATTGAGAAG ATATGTGGTGGTTAGTTTGCAGTTTTCACAATTTTTTACTTTTGGTTATGGCTCAAAGAGTTCAATAACTATGAACTGTC AATCTAAAAATGTTTTACAGAGACACTCAATCAGCATTCACTATTTTGCCACGTCATAAATG
CDS sequence (LotjaGi5g1v0051100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAAAAGGAGGAAACTCTTCAAGCAAAGCTACAACAAGTGAGGGAGGAGAACAATGCTCTAAGACTGATGCTTGA GGTTCTGAGCAGCAAGTGCAGAAAGCTTGAGTCCCAACTTGAAGAGATCAACAAGAACGAACAGAAGGGTATCAGTTCAT ATCAAATTGAGTCTCTGTCTAACCATGTTTCTAGCAAGAGAGCAAGGCTAGAATTTCCCACAGTCAAAAAGCCATTGGAA ATCTTCTTCAGAACCCTCCCCAATGATGACACTTTGTTAATTAAAGATGGATATCAGTGGAGGAAGTATGGGCAGAAGGT TACCAAAGACAATGGTTCTCCTCGAGCTTACTTTAGGTGCTCCATGGCTCCCACTTGCCCAGCCAAAAAGAAGGTGCAAA GATGCACACATGATAGGTCTATCCTTGCTGCAACTTATGATGGAGAGCACAACCATAGTGCCCTTGATGACTCATTCAGA CCATCTTCATCCACACCAAAAGGCTCATCAATAGCTAATAATTTATCTCCAACAATTATACCATATGATAAAGAAGCTAT GAACAATGTCTTTGCTATTTCTGATTGGGCTCAAACAAATGCTAGACTCTATGAGGATGTCATTCCACAGCATGTCCATG GCAGCAACATCAAAATTGAAGATTATATAAGTTCTGTGATCAAAGATCCTGATTTCACTACTGCATTAGCGGAAGCAGTT GCCCACATTATCACAGGTCAACATAAGCGACAAAGTCTAAATCTCAATTTGGATATTCCAAAAGAGTGA
Protein sequence (LotjaGi5g1v0051100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEKEETLQAKLQQVREENNALRLMLEVLSSKCRKLESQLEEINKNEQKGISSYQIESLSNHVSSKRARLEFPTVKKPLE IFFRTLPNDDTLLIKDGYQWRKYGQKVTKDNGSPRAYFRCSMAPTCPAKKKVQRCTHDRSILAATYDGEHNHSALDDSFR PSSSTPKGSSIANNLSPTIIPYDKEAMNNVFAISDWAQTNARLYEDVIPQHVHGSNIKIEDYISSVIKDPDFTTALAEAV AHIITGQHKRQSLNLNLDIPKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 244 | 244 | 3.6E-87 | – | |
| PANTHER | 1 | 244 | 244 | 3.6E-87 | – | |
| Coils | 1 | 46 | 46 | - | – | |
| Gene3D | 84 | 155 | 72 | 4.9E-27 | ||
| ProSiteProfiles | 89 | 155 | 67 | 24.076 | ||
| SUPERFAMILY | 91 | 153 | 63 | 1.7E-24 | ||
| SMART | 94 | 154 | 61 | 3.7E-30 | ||
| Pfam | 95 | 152 | 58 | 6.2E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0051100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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