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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0051900 |
| Transcript ID | LotjaGi5g1v0051900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT4G31820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1; TrEMBL-Plants: tr|K7MND2|K7MND2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0051900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8723744..8725881) extracted from Lotus japonicus Gifu genome v1.2.
TTCAAGGGACTTTATGTGTGGTCCTTACATAAAAGTATGTTAGTTTTTTTTTAAACTAAAAATGGTGTTCAAGTGGTATA ATTTTTACCCAGGGAGACATCTTGCTTTATTGATGTTGACTTTTCATAAGTTGCAGTTCCCTCTACTGTCCAAGAGCAAT CGATTGCAAAAGCTTGTGTCAAAGGCTAATGAAGTGAATTCTGATGAAATTTACTTGGATGATTTCCCTGGTGGCCCCAA GGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCTAGATGTG CAGCTGAGTACCTTGAAATGACAGAGGACATTGATAAAGGAAACTTAATTTTCAAAATTGAGGTGTTTCTTACCTCGAGC ATTTTTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTCTTGCCATGGTCTGAGGACCTGAAGAT CATTGGGAGATGCATAGATTCCATAGCTTCTAAAACTTCTGTAGACCCCGCGAACATCACTTGGTCTTACACTTATAACC GGAAATTGACAGAGCTTGTTGGAATAGTTGAGGACAAGTTGCCGCCACGAGAGAACATTGAGCCTGTCCCAAAGGATTGG TGGGTTGAAGATATATGTGAGCTGGACATTGATCTTTATAAAAGGGTAATGATTACTGTGAAATCAAAGGGAAGAATGGA CGGGGTTGTGATCGGGGAGGCATTGAAAGTCTATGCGGTAAGATGGTTGCCTGATTCTGTTGAGGCTTTGGTTTCTGAAG CCCATGCCAGGAGGAACAAAGCTCTTGTAGAAACTATTGTCTGTTTATTGCCGTGTGATAATGGTGTCGGTTGTTCGTGT AGTTTCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTTGAAGCTGACGAGTCGTCAAGGGAAGAATTGATGAAGAGCAT TGGCCAAAAATTGCATCAAGCTTCAGCCAAAGATTTGCTGTTTCCAGCAAGATCACCCCAGATTACGGCGTATGATGTTG ATTTGGTGCAAGATCTTTTGAATCGGTACATGGCTAGTGAAAAGGGAAGCTATGATATGGAGGCAATAGGGAAGGGAAAT AAAGCAAATGATGAATCTATTTTAGGGCATAGGTCTTCATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTACAGAAAT TGCACATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGATCTGTCACAGTCAGTTCCAGAGTTTGCTAGGCCAAATCATG ATGGTCTCTACAGAGCTATTGACATCTACTTAAAGGTAAAACTTTTGTAAACATGGAGTATACTTTGATCACATGATGAA TATAGAATTAACTTGGCGAACACTTTTTGCTTTACTTCTATCCTTATTTCCTTAGAGAAGATGTTTTTACTATTTTTTTT TGTTGATTCCTGTTTCATATTATCCCATATTTTAGGTAACCTGACTCCTTTTCTTTCTGTTGTTACTTTTATTTTCATTA AATTGATTGTTAATCAAACATTTAAAGTCTTCTGTACATGTATATTTTGTAATTGCAATTATCATAGCATTGACTTGAGT CCTTCATCTTCAGGAGCATCCAAGTTTGACAAAAGCTGAAAGGAAGAAGATATGTGGACTAATGAATGTCAAGAAATTGA CAGCAGATGCATCGATGCACGCCGCACAGAATGAGCGCCTTCCCCTTCGAGTTGTTGTCCAGGTTCTCTATTTTGAGCAG GTTAGAGCTTCTGCGAATGCCAGAGCACTTAGTAGCAGTCCCCGTGATCCTTCATGTTTGGCGATGAATGGAGATGAGGA ATGTGGAAAACCTGTGGGAGAGAGCTGCCAGTCCCTCAACTGCAAGATGAGTAACTTGAAGATTAAGGATGTAAAACTGA ATAAGAAGAGCAGCAAAAACAGCAGAAGTGGCATTCAGTTGCTGCCATCTAGGTCAAGGAGAATCTTTGATAAGTTATGG CTTGGGGGTAACAAAGGACAAGGAGAAAATAGGAGCCCAGAGACCTCAGGGAGTTCTAATAGTCCTACCTCTCTGGTCCC TGGAGACACCAAATCATCTGGTTCATCCTTAAGACACAGGAGGCATTCTATCTCCTAA
CDS sequence (LotjaGi5g1v0051900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCAAGTGGTATAATTTTTACCCAGGGAGACATCTTGCTTTATTGATGTTGACTTTTCATAAGTTGCAGTTCCC TCTACTGTCCAAGAGCAATCGATTGCAAAAGCTTGTGTCAAAGGCTAATGAAGTGAATTCTGATGAAATTTACTTGGATG ATTTCCCTGGTGGCCCCAAGGCCTTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAAT GTTGTGGCTGCTAGATGTGCAGCTGAGTACCTTGAAATGACAGAGGACATTGATAAAGGAAACTTAATTTTCAAAATTGA GGTGTTTCTTACCTCGAGCATTTTTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTCTTGCCAT GGTCTGAGGACCTGAAGATCATTGGGAGATGCATAGATTCCATAGCTTCTAAAACTTCTGTAGACCCCGCGAACATCACT TGGTCTTACACTTATAACCGGAAATTGACAGAGCTTGTTGGAATAGTTGAGGACAAGTTGCCGCCACGAGAGAACATTGA GCCTGTCCCAAAGGATTGGTGGGTTGAAGATATATGTGAGCTGGACATTGATCTTTATAAAAGGGTAATGATTACTGTGA AATCAAAGGGAAGAATGGACGGGGTTGTGATCGGGGAGGCATTGAAAGTCTATGCGGTAAGATGGTTGCCTGATTCTGTT GAGGCTTTGGTTTCTGAAGCCCATGCCAGGAGGAACAAAGCTCTTGTAGAAACTATTGTCTGTTTATTGCCGTGTGATAA TGGTGTCGGTTGTTCGTGTAGTTTCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTTGAAGCTGACGAGTCGTCAAGGG AAGAATTGATGAAGAGCATTGGCCAAAAATTGCATCAAGCTTCAGCCAAAGATTTGCTGTTTCCAGCAAGATCACCCCAG ATTACGGCGTATGATGTTGATTTGGTGCAAGATCTTTTGAATCGGTACATGGCTAGTGAAAAGGGAAGCTATGATATGGA GGCAATAGGGAAGGGAAATAAAGCAAATGATGAATCTATTTTAGGGCATAGGTCTTCATTGAATGTTGGCAAGTTGGTGG ATGGTTATCTTACAGAAATTGCACATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGATCTGTCACAGTCAGTTCCAGAG TTTGCTAGGCCAAATCATGATGGTCTCTACAGAGCTATTGACATCTACTTAAAGGAGCATCCAAGTTTGACAAAAGCTGA AAGGAAGAAGATATGTGGACTAATGAATGTCAAGAAATTGACAGCAGATGCATCGATGCACGCCGCACAGAATGAGCGCC TTCCCCTTCGAGTTGTTGTCCAGGTTCTCTATTTTGAGCAGGTTAGAGCTTCTGCGAATGCCAGAGCACTTAGTAGCAGT CCCCGTGATCCTTCATGTTTGGCGATGAATGGAGATGAGGAATGTGGAAAACCTGTGGGAGAGAGCTGCCAGTCCCTCAA CTGCAAGATGAGTAACTTGAAGATTAAGGATGTAAAACTGAATAAGAAGAGCAGCAAAAACAGCAGAAGTGGCATTCAGT TGCTGCCATCTAGGTCAAGGAGAATCTTTGATAAGTTATGGCTTGGGGGTAACAAAGGACAAGGAGAAAATAGGAGCCCA GAGACCTCAGGGAGTTCTAATAGTCCTACCTCTCTGGTCCCTGGAGACACCAAATCATCTGGTTCATCCTTAAGACACAG GAGGCATTCTATCTCCTAA
Protein sequence (LotjaGi5g1v0051900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFKWYNFYPGRHLALLMLTFHKLQFPLLSKSNRLQKLVSKANEVNSDEIYLDDFPGGPKAFEICAKFCYGMTVTLNAYN VVAARCAAEYLEMTEDIDKGNLIFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRCIDSIASKTSVDPANIT WSYTYNRKLTELVGIVEDKLPPRENIEPVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKVYAVRWLPDSV EALVSEAHARRNKALVETIVCLLPCDNGVGCSCSFLLKLLKVAILVEADESSREELMKSIGQKLHQASAKDLLFPARSPQ ITAYDVDLVQDLLNRYMASEKGSYDMEAIGKGNKANDESILGHRSSLNVGKLVDGYLTEIAHDPNLSLSSFVDLSQSVPE FARPNHDGLYRAIDIYLKEHPSLTKAERKKICGLMNVKKLTADASMHAAQNERLPLRVVVQVLYFEQVRASANARALSSS PRDPSCLAMNGDEECGKPVGESCQSLNCKMSNLKIKDVKLNKKSSKNSRSGIQLLPSRSRRIFDKLWLGGNKGQGENRSP ETSGSSNSPTSLVPGDTKSSGSSLRHRRHSIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 582 | 564 | 2.7E-266 | ||
| PANTHER | 19 | 582 | 564 | 2.7E-266 | ||
| CDD | 20 | 105 | 86 | 3.74547E-37 | – | |
| SUPERFAMILY | 24 | 96 | 73 | 5.49E-9 | ||
| Pfam | 192 | 445 | 254 | 2.5E-87 | ||
| ProSiteProfiles | 192 | 469 | 278 | 88.531 | ||
| MobiDBLite | 548 | 592 | 45 | - | – | |
| MobiDBLite | 555 | 580 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Auxin transport | The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Plant organ development | Development of a plant organ, a multi-tissue plant structure that forms a functional unit. |
Expression pattern of LotjaGi5g1v0051900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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