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LotjaGi5g1v0051900.3

Overview

Field Value
Gene ID LotjaGi5g1v0051900
Transcript ID LotjaGi5g1v0051900.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description BTB/POZ domain-containing protein; TAIR: AT4G31820.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q8H1D3|NPY1_ARATH BTB/POZ domain-containing protein NPY1; TrEMBL-Plants: tr|K7MND2|K7MND2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0051900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:8723744..8726597) extracted from Lotus japonicus Gifu genome v1.2.

TCCCCCTTTTTGAATTTTTTTTTTCATTTTTTATAAGCTAAGCAATCAATTTTCCAATTATGCAGGTACATATCATCTGA ATTGGCTACTGATATTATGATAATTGTTGGTGAAGTTAGGTTTGATCTTCACAAGGTATGTAACCTGTCTGTATCTTTAC TTTGTTGTCTTGCTAAATAAGAAAAGTTGTATTATTACGGATCATTACACTGACCTCCATTGTTGTTGTGCCGTTTGGTT ACAGCCATTTTTATGGTTTTGGTTAAAAATAAGTGGGGTTAACTTGCATTGTAACCGGTGGTTTCTGTATTTTTCAGTGA AGTATAAGTGAGTTTCTAACCATAAAAACTTATTTTAGAATAAGTATTTTGTACGTACTTTTCAGTTAGAAAAAAGTAAG TGAGATGTTATTTTACTAGATCACTCATATTGATACATCACCTTGATATTATATCTATCATCTTATATCGATATTAGCAA TTTTATTTCTAAAAGTAACTTCACTTTATTCTAGTAAAACAACAACATGCTTTTTATAAAACTTACTTTTATACTTCATT CCCAAACACAAATTAATTTTATCAAGCTTAGTTCTACTAAACTAATTTATATCAAACTTACTTTTACCTAACTAAAAAAC AAACTGATCGTCAGCAATAATTCCATTGACACACTTGTTTGGAAAATAATGCCAACCTCCCTTGCTTTGTTTTTTTTTCA AGGGACTTTATGTGTGGTCCTTACATAAAAGTATGTTAGTTTTTTTTTAAACTAAAAATGGTGTTCAAGTGGTATAATTT TTACCCAGGGAGACATCTTGCTTTATTGATGTTGACTTTTCATAAGTTGCAGTTCCCTCTACTGTCCAAGAGCAATCGAT TGCAAAAGCTTGTGTCAAAGGCTAATGAAGTGAATTCTGATGAAATTTACTTGGATGATTTCCCTGGTGGCCCCAAGGCC TTTGAAATATGTGCAAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCTAGATGTGCAGC TGAGTACCTTGAAATGACAGAGGACATTGATAAAGGAAACTTAATTTTCAAAATTGAGGTGTTTCTTACCTCGAGCATTT TTCGTAGCTGGAAGGATTCTATAATTGTTCTCCAAACTACTAAATCTCTCTTGCCATGGTCTGAGGACCTGAAGATCATT GGGAGATGCATAGATTCCATAGCTTCTAAAACTTCTGTAGACCCCGCGAACATCACTTGGTCTTACACTTATAACCGGAA ATTGACAGAGCTTGTTGGAATAGTTGAGGACAAGTTGCCGCCACGAGAGAACATTGAGCCTGTCCCAAAGGATTGGTGGG TTGAAGATATATGTGAGCTGGACATTGATCTTTATAAAAGGGTAATGATTACTGTGAAATCAAAGGGAAGAATGGACGGG GTTGTGATCGGGGAGGCATTGAAAGTCTATGCGGTAAGATGGTTGCCTGATTCTGTTGAGGCTTTGGTTTCTGAAGCCCA TGCCAGGAGGAACAAAGCTCTTGTAGAAACTATTGTCTGTTTATTGCCGTGTGATAATGGTGTCGGTTGTTCGTGTAGTT TCTTGCTGAAGCTATTGAAAGTGGCCATATTAGTTGAAGCTGACGAGTCGTCAAGGGAAGAATTGATGAAGAGCATTGGC CAAAAATTGCATCAAGCTTCAGCCAAAGATTTGCTGTTTCCAGCAAGATCACCCCAGATTACGGCGTATGATGTTGATTT GGTGCAAGATCTTTTGAATCGGTACATGGCTAGTGAAAAGGGAAGCTATGATATGGAGGCAATAGGGAAGGGAAATAAAG CAAATGATGAATCTATTTTAGGGCATAGGTCTTCATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTACAGAAATTGCA CATGATCCAAATCTCAGCCTCTCTAGTTTTGTTGATCTGTCACAGTCAGTTCCAGAGTTTGCTAGGCCAAATCATGATGG TCTCTACAGAGCTATTGACATCTACTTAAAGGTAAAACTTTTGTAAACATGGAGTATACTTTGATCACATGATGAATATA GAATTAACTTGGCGAACACTTTTTGCTTTACTTCTATCCTTATTTCCTTAGAGAAGATGTTTTTACTATTTTTTTTTGTT GATTCCTGTTTCATATTATCCCATATTTTAGGTAACCTGACTCCTTTTCTTTCTGTTGTTACTTTTATTTTCATTAAATT GATTGTTAATCAAACATTTAAAGTCTTCTGTACATGTATATTTTGTAATTGCAATTATCATAGCATTGACTTGAGTCCTT CATCTTCAGGAGCATCCAAGTTTGACAAAAGCTGAAAGGAAGAAGATATGTGGACTAATGAATGTCAAGAAATTGACAGC AGATGCATCGATGCACGCCGCACAGAATGAGCGCCTTCCCCTTCGAGTTGTTGTCCAGGTTCTCTATTTTGAGCAGGTTA GAGCTTCTGCGAATGCCAGAGCACTTAGTAGCAGTCCCCGTGATCCTTCATGTTTGGCGATGAATGGAGATGAGGAATGT GGAAAACCTGTGGGAGAGAGCTGCCAGTCCCTCAACTGCAAGATGAGTAACTTGAAGATTAAGGATGTAAAACTGAATAA GAAGAGCAGCAAAAACAGCAGAAGTGGCATTCAGTTGCTGCCATCTAGGTCAAGGAGAATCTTTGATAAGTTATGGCTTG GGGGTAACAAAGGACAAGGAGAAAATAGGAGCCCAGAGACCTCAGGGAGTTCTAATAGTCCTACCTCTCTGGTCCCTGGA GACACCAAATCATCTGGTTCATCCTTAAGACACAGGAGGCATTCTATCTCCTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0051900.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAATTGTTGGTGAAGTTAGGTTTGATCTTCACAAGTTCCCTCTACTGTCCAAGAGCAATCGATTGCAAAAGCTTGT GTCAAAGGCTAATGAAGTGAATTCTGATGAAATTTACTTGGATGATTTCCCTGGTGGCCCCAAGGCCTTTGAAATATGTG CAAAGTTCTGCTATGGAATGACTGTTACTCTTAATGCTTACAATGTTGTGGCTGCTAGATGTGCAGCTGAGTACCTTGAA ATGACAGAGGACATTGATAAAGGAAACTTAATTTTCAAAATTGAGGTGTTTCTTACCTCGAGCATTTTTCGTAGCTGGAA GGATTCTATAATTGTTCTCCAAACTACTAAATCTCTCTTGCCATGGTCTGAGGACCTGAAGATCATTGGGAGATGCATAG ATTCCATAGCTTCTAAAACTTCTGTAGACCCCGCGAACATCACTTGGTCTTACACTTATAACCGGAAATTGACAGAGCTT GTTGGAATAGTTGAGGACAAGTTGCCGCCACGAGAGAACATTGAGCCTGTCCCAAAGGATTGGTGGGTTGAAGATATATG TGAGCTGGACATTGATCTTTATAAAAGGGTAATGATTACTGTGAAATCAAAGGGAAGAATGGACGGGGTTGTGATCGGGG AGGCATTGAAAGTCTATGCGGTAAGATGGTTGCCTGATTCTGTTGAGGCTTTGGTTTCTGAAGCCCATGCCAGGAGGAAC AAAGCTCTTGTAGAAACTATTGTCTGTTTATTGCCGTGTGATAATGGTGTCGGTTGTTCGTGTAGTTTCTTGCTGAAGCT ATTGAAAGTGGCCATATTAGTTGAAGCTGACGAGTCGTCAAGGGAAGAATTGATGAAGAGCATTGGCCAAAAATTGCATC AAGCTTCAGCCAAAGATTTGCTGTTTCCAGCAAGATCACCCCAGATTACGGCGTATGATGTTGATTTGGTGCAAGATCTT TTGAATCGGTACATGGCTAGTGAAAAGGGAAGCTATGATATGGAGGCAATAGGGAAGGGAAATAAAGCAAATGATGAATC TATTTTAGGGCATAGGTCTTCATTGAATGTTGGCAAGTTGGTGGATGGTTATCTTACAGAAATTGCACATGATCCAAATC TCAGCCTCTCTAGTTTTGTTGATCTGTCACAGTCAGTTCCAGAGTTTGCTAGGCCAAATCATGATGGTCTCTACAGAGCT ATTGACATCTACTTAAAGGAGCATCCAAGTTTGACAAAAGCTGAAAGGAAGAAGATATGTGGACTAATGAATGTCAAGAA ATTGACAGCAGATGCATCGATGCACGCCGCACAGAATGAGCGCCTTCCCCTTCGAGTTGTTGTCCAGGTTCTCTATTTTG AGCAGGTTAGAGCTTCTGCGAATGCCAGAGCACTTAGTAGCAGTCCCCGTGATCCTTCATGTTTGGCGATGAATGGAGAT GAGGAATGTGGAAAACCTGTGGGAGAGAGCTGCCAGTCCCTCAACTGCAAGATGAGTAACTTGAAGATTAAGGATGTAAA ACTGAATAAGAAGAGCAGCAAAAACAGCAGAAGTGGCATTCAGTTGCTGCCATCTAGGTCAAGGAGAATCTTTGATAAGT TATGGCTTGGGGGTAACAAAGGACAAGGAGAAAATAGGAGCCCAGAGACCTCAGGGAGTTCTAATAGTCCTACCTCTCTG GTCCCTGGAGACACCAAATCATCTGGTTCATCCTTAAGACACAGGAGGCATTCTATCTCCTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0051900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIIVGEVRFDLHKFPLLSKSNRLQKLVSKANEVNSDEIYLDDFPGGPKAFEICAKFCYGMTVTLNAYNVVAARCAAEYLE MTEDIDKGNLIFKIEVFLTSSIFRSWKDSIIVLQTTKSLLPWSEDLKIIGRCIDSIASKTSVDPANITWSYTYNRKLTEL VGIVEDKLPPRENIEPVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGVVIGEALKVYAVRWLPDSVEALVSEAHARRN KALVETIVCLLPCDNGVGCSCSFLLKLLKVAILVEADESSREELMKSIGQKLHQASAKDLLFPARSPQITAYDVDLVQDL LNRYMASEKGSYDMEAIGKGNKANDESILGHRSSLNVGKLVDGYLTEIAHDPNLSLSSFVDLSQSVPEFARPNHDGLYRA IDIYLKEHPSLTKAERKKICGLMNVKKLTADASMHAAQNERLPLRVVVQVLYFEQVRASANARALSSSPRDPSCLAMNGD EECGKPVGESCQSLNCKMSNLKIKDVKLNKKSSKNSRSGIQLLPSRSRRIFDKLWLGGNKGQGENRSPETSGSSNSPTSL VPGDTKSSGSSLRHRRHSIS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS50097
1 66 66 8.689
IPR000210
Gene3D
G3DSA:3.30.710.10
1 93 93 1.2E-6 –
PANTHER
PTHR32370:SF7
2 570 569 3.4E-272
IPR029961
SUPERFAMILY
SSF54695
2 84 83 1.33E-13
IPR011333
PANTHER
PTHR32370
2 570 569 3.4E-272
IPR043454
Pfam
PF00651
2 86 85 5.4E-5
IPR000210
CDD
cd18312
2 93 92 1.37485E-42 –
Pfam
PF03000
180 433 254 2.4E-87
IPR027356
ProSiteProfiles
PS51649
180 457 278 88.531
IPR027356
MobiDBLite
mobidb-lite
536 580 45 - –
MobiDBLite
mobidb-lite
543 568 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0060918
Biological process Auxin transport The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0099402
Biological process Plant organ development Development of a plant organ, a multi-tissue plant structure that forms a functional unit.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0051900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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