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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0052800 |
| Transcript ID | LotjaGi5g1v0052800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7IAW3|G7IAW3_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi5g1v0052800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8808818..8812047) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAATCTTTAAAAATATATGTTAAGAAAAACAAAATTATTGAATATGTATTCAAAGTTAAGAAAAAACAAAATCTT GGATGGATGGGGTGGATAAAAATAAAATATTTTTCAAAGTTAAGAAAAATAAAATTTGTATATCGGTGGATATATATAAA CAAAATCTTTAAGAAATATAAGTAAGAAAAACAAAAATTGGATATTTTTTTTTGGATGATATGGGGGTGACACGTGACAA AACCTTCTAAAAAAAACCTTCATTTAGTATATTATATAGATATATATTAGAAAAGAATTAGATAACTTATCTTTTGTTGA CACGTGTTTCCTAATTCCAAAACAGATCCTGAAATCAAATTTTAAAAGATTTACCCTAATTATCTAAGATTTAAACAAAC ACACCACATAATCACATTCATATATCAAATATAAAGTGAAAGCAATAGCTTCCTCACTTTCTTGGTTACTATCACTATCT GAAACTGTGGGACATAGAGAGGGAGAGAGAGCTTTTCTATAGTTCCAGCATCCATGACTCGAAACATGCCAAATAATCAC TCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAACTGGAGAGCTTGTAAGCATTCTTTTCTTCATCTC CTCTTTAGTTCTTTCTGCTCATTTTCTTTTTTCTTTGGTCCTTTTACTTAAAAATGTTGATCTACTACACCTAATTTTAG AATGTCTAAATTTTTTGTATTTTTTAGTAGTTAGGAACTGATGCCACACACTACAGATTAGAAACTAGGAAATCATCAGC ATCATTGGTTAATAAGGACATGTTTCTGTTGTGCTGGTGAATTTTGCTATGCATGCTCATGGAAAGTTTTGTGCAGAGGA TTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGGCAAACCCAACGTTTCTCAAGCCTCCAGATGGAACTGATTGG AAAATATATCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGAAATATTACTCCCTTGA TCACGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGGGGTACATATATTTGATAAGAGCACCCTTGAAA TAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTCAGTTGAGATATTGGAT AAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGAAATTGAGAACCAGTAC AAGTGAAGATGTTGGAGAAAGCCCTGAATTGCACAACTTACCTAAACAAGTCAAAATTGAAGGTTGGATTATCCTTTTCA TTTCATAGATCATGTTGAGACTGTGAGGCCATATTTTTGTAAAATAACCACTGTGTTCAACATTTCAGATGATGCCGGTA GAACCACTGAATGCCTTGAAGGGGAGGACCTAACTTCCAAAATCACTGAAGCTTTGAACAGAGCCAGAACCTTCCAATCT AAATTTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTAATGGATATTCCTTGGTGAGATTTTGTTTATCCTCATT TTTATCCATTAAGATAGCTTTATATAATGCACAAGTATAACTTATTAGGCTTTCTGACTTGTATAATCCAGCATATACCA TCATTCTTTGCAAAAAAATATTTGAAGAATGAAACGGATGTCCTCCTGCAAGTCTTGGATGGAAGAACTTGGTCTGTTAG TTTTAACCTCGGCAAATTCAATGCTGGGTGGAAGAAATTCACATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTT TTGAGCTAAACAAGAGTGTACCCCTTTCATTGAAAGTATTGATCTTTCCACTTGCAGAAGAACCGCATTCGCTGCCTCGA TCACTAGGTAATCCAAGTTGGTTTTTGTTTTACTGTTTTATTCCATTTGACCTGCATATTTTTGGTTATAATTTTCTTCC TTGGAATCAGTTCAAGGAGATAGAGTCAATCATATCAACTATGGGAGATTCCGGTACACTGAAAGTCAAAATGTTCTTAC CAGCAAATGTATGTTGTTTTGCCACTGAGCAAGTGGTAGTTAATTATTATCTTATTACTCGTCCCTATGAAATGGTTAAG TTCATTCAACTGAAAATGCAACTATAGATTTTTCAAAATTGTATAGTGCATCCATTAGCTAATTATCATATATACCACAG GTGCGGAGACAATTAAAAGAACTTCAAAGCTAATTAGCCCCTGCCCCTTGAAAAATGCTGCTCTGGAAGAAGCTAACAAA TTCAACTCAAACAATCCCTTTTTCATAGTCAATATAGCGCCAGATAAGAACCGAGATTACAGACCGGTAAGTTTATCAAG TGGCTATTCAAATAGGTGTGTGGTATTTTGTATTTATGTTTGGATCCTGGCTTGATGCAATATTAACAGACTTTTATCTC AACCCATGAAAAGAGTTCCCTTCATTTTTTTGTCTTGAATTGCGTGGGAACGTCCGTTTGCATGACTACAAATGGATATC CATCATCCTGAGACACCATAACACTCATAGTCTCCTAATTCCCATAAAAAATACATATAGTATTACATATATCTTTATGG AAATTTAACTTCATACAAATCATGCTAGCAGCAATCCTGAAGTTATTGTTCTATACTGTGATTAGCTAATAGCTATTAGG CTCTGATCTTGTGGTGATAAAAAATATAATTTTATGCAGCGCGTACCAAAGCTCTTCATCAGGAAGCACTTCAATGACAT CCAGCAGAGTGAGCAGACAGTAATATTACAGTGCGAAAAGAAATTGTGTCCTGTGAAGTTGACCTGTTATCCAAAAAAAG GTCCAAGCAGGTTGTCCAAAGGTTGGGTCGAATTTGCTAAAAAAAGTAAATTGGAAGTTGGAGATGCTTGTGTCTTTGAG CTCATCAATAAGGAAGATCCGGTGCTTGATGTTCACATTTACAGAGGTCACTGATATTTGAAGTTGTTAGTACCATAAAA AATGTACCACTGCTTCTAAATGCAATGGACAAAAACATTAAACACCTTTGTTGAATGTTGTCTACATTGATAAATACTCA GTTAGTCCTGTATGTTCTGCTTCTAAATGCAATGGACATGATTTCTTAATCCCAAGATTGGTTGAAAATGGGCTGATGAG AACGTTTGGTGTGAAATTTATCCTTAAGTG
CDS sequence (LotjaGi5g1v0052800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCATGGAAAGTTTTGTGCAGAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGGCAAACCCAACGTT TCTCAAGCCTCCAGATGGAACTGATTGGAAAATATATCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGA AAGATTTTGCGAAATATTACTCCCTTGATCACGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGGGGTA CATATATTTGATAAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGAT TGATGATGACTCAGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTA AACCACGCAAGAAATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGCCCTGAATTGCACAACTTACCTAAACAAGTC AAAATTGAAGATGATGCCGGTAGAACCACTGAATGCCTTGAAGGGGAGGACCTAACTTCCAAAATCACTGAAGCTTTGAA CAGAGCCAGAACCTTCCAATCTAAATTTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTAATGGATATTCCTTGC ATATACCATCATTCTTTGCAAAAAAATATTTGAAGAATGAAACGGATGTCCTCCTGCAAGTCTTGGATGGAAGAACTTGG TCTGTTAGTTTTAACCTCGGCAAATTCAATGCTGGGTGGAAGAAATTCACATCAGTTAATAATTTGAAGGTGGGAGATGT ATGTCTTTTTGAGCTAAACAAGAGTGTACCCCTTTCATTGAAAGTATTGATCTTTCCACTTGCAGAAGAACCGCATTCGC TGCCTCGATCACTAGGTGCGGAGACAATTAAAAGAACTTCAAAGCTAATTAGCCCCTGCCCCTTGAAAAATGCTGCTCTG GAAGAAGCTAACAAATTCAACTCAAACAATCCCTTTTTCATAGTCAATATAGCGCCAGATAAGAACCGAGATTACAGACC GCGCGTACCAAAGCTCTTCATCAGGAAGCACTTCAATGACATCCAGCAGAGTGAGCAGACAGTAATATTACAGTGCGAAA AGAAATTGTGTCCTGTGAAGTTGACCTGTTATCCAAAAAAAGGTCCAAGCAGGTTGTCCAAAGGTTGGGTCGAATTTGCT AAAAAAAGTAAATTGGAAGTTGGAGATGCTTGTGTCTTTGAGCTCATCAATAAGGAAGATCCGGTGCTTGATGTTCACAT TTACAGAGGTCACTGA
Protein sequence (LotjaGi5g1v0052800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLMESFVQRIPNNFTKRYGGDMANPTFLKPPDGTDWKIYHSKTDGDVWFQNGWKDFAKYYSLDHGHMVLFEYKDTSHFGV HIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKLRTSTSEDVGESPELHNLPKQV KIEDDAGRTTECLEGEDLTSKITEALNRARTFQSKFPSFMTVMKPAYVNGYSLHIPSFFAKKYLKNETDVLLQVLDGRTW SVSFNLGKFNAGWKKFTSVNNLKVGDVCLFELNKSVPLSLKVLIFPLAEEPHSLPRSLGAETIKRTSKLISPCPLKNAAL EEANKFNSNNPFFIVNIAPDKNRDYRPRVPKLFIRKHFNDIQQSEQTVILQCEKKLCPVKLTCYPKKGPSRLSKGWVEFA KKSKLEVGDACVFELINKEDPVLDVHIYRGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 86 | 86 | 12.675 | ||
| Gene3D | 1 | 87 | 87 | 4.0E-20 | ||
| SUPERFAMILY | 2 | 93 | 92 | 4.32E-17 | ||
| SMART | 2 | 86 | 85 | 0.0029 | ||
| PANTHER | 7 | 286 | 280 | 1.1E-90 | – | |
| PANTHER | 7 | 286 | 280 | 1.1E-90 | – | |
| Pfam | 9 | 85 | 77 | 2.4E-12 | ||
| CDD | 9 | 84 | 76 | 1.7328E-11 | ||
| MobiDBLite | 124 | 151 | 28 | - | – | |
| Gene3D | 179 | 289 | 111 | 3.2E-26 | ||
| SUPERFAMILY | 192 | 285 | 94 | 1.1E-17 | ||
| CDD | 197 | 286 | 90 | 1.07186E-16 | ||
| ProSiteProfiles | 198 | 286 | 89 | 11.42 | ||
| SMART | 199 | 288 | 90 | 5.1E-14 | ||
| Pfam | 199 | 285 | 87 | 3.1E-14 | ||
| Gene3D | 315 | 430 | 116 | 9.6E-26 | ||
| PANTHER | 316 | 430 | 115 | 1.1E-90 | – | |
| PANTHER | 316 | 430 | 115 | 1.1E-90 | – | |
| SUPERFAMILY | 326 | 429 | 104 | 5.49E-16 | ||
| Pfam | 332 | 429 | 98 | 3.8E-12 | ||
| CDD | 332 | 429 | 98 | 7.46538E-15 | ||
| SMART | 332 | 431 | 100 | 1.4E-5 | ||
| ProSiteProfiles | 332 | 431 | 100 | 9.968 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0052800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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