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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0052800 |
| Transcript ID | LotjaGi5g1v0052800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|G7IAW3|G7IAW3_MEDTR Transcriptional factor B3 family protein; Found in the gene: LotjaGi5g1v0052800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:8808837..8811583) extracted from Lotus japonicus Gifu genome v1.2.
GTTACTATCACTATCTGAAACTGTGGGACATAGAGAGGGAGAGAGAGCTTTTCTATAGTTCCAGCATCCATGACTCGAAA CATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAACTGGAGAGCTTGTAAGCA TTCTTTTCTTCATCTCCTCTTTAGTTCTTTCTGCTCATTTTCTTTTTTCTTTGGTCCTTTTACTTAAAAATGTTGATCTA CTACACCTAATTTTAGAATGTCTAAATTTTTTGTATTTTTTAGTAGTTAGGAACTGATGCCACACACTACAGATTAGAAA CTAGGAAATCATCAGCATCATTGGTTAATAAGGACATGTTTCTGTTGTGCTGGTGAATTTTGCTATGCATGCTCATGGAA AGTTTTGTGCAGAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGGCAAACCCAACGTTTCTCAAGCCTCC AGATGGAACTGATTGGAAAATATATCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGA AATATTACTCCCTTGATCACGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGGGGTACATATATTTGAT AAGAGCACCCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTC AGTTGAGATATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGA AATTGAGAACCAGTACAAGTGAAGATGTTGGAGAAAGCCCTGAATTGCACAACTTACCTAAACAAGTCAAAATTGAAGGT TGGATTATCCTTTTCATTTCATAGATCATGTTGAGACTGTGAGGCCATATTTTTGTAAAATAACCACTGTGTTCAACATT TCAGATGATGCCGGTAGAACCACTGAATGCCTTGAAGGGGAGGACCTAACTTCCAAAATCACTGAAGCTTTGAACAGAGC CAGAACCTTCCAATCTAAATTTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTAATGGATATTCCTTGGTGAGAT TTTGTTTATCCTCATTTTTATCCATTAAGATAGCTTTATATAATGCACAAGTATAACTTATTAGGCTTTCTGACTTGTAT AATCCAGCATATACCATCATTCTTTGCAAAAAAATATTTGAAGAATGAAACGGATGTCCTCCTGCAAGTCTTGGATGGAA GAACTTGGTCTGTTAGTTTTAACCTCGGCAAATTCAATGCTGGGTGGAAGAAATTCACATCAGTTAATAATTTGAAGGTG GGAGATGTATGTCTTTTTGAGCTAAACAAGAGTGTACCCCTTTCATTGAAAGTATTGATCTTTCCACTTGCAGAAGAACC GCATTCGCTGCCTCGATCACTAGGTAATCCAAGTTGGTTTTTGTTTTACTGTTTTATTCCATTTGACCTGCATATTTTTG GTTATAATTTTCTTCCTTGGAATCAGTTCAAGGAGATAGAGTCAATCATATCAACTATGGGAGATTCCGGTACACTGAAA GTCAAAATGTTCTTACCAGCAAATGTATGTTGTTTTGCCACTGAGCAAGTGGTAGTTAATTATTATCTTATTACTCGTCC CTATGAAATGGTTAAGTTCATTCAACTGAAAATGCAACTATAGATTTTTCAAAATTGTATAGTGCATCCATTAGCTAATT ATCATATATACCACAGGTGCGGAGACAATTAAAAGAACTTCAAAGCTAATTAGCCCCTGCCCCTTGAAAAATGCTGCTCT GGAAGAAGCTAACAAATTCAACTCAAACAATCCCTTTTTCATAGTCAATATAGCGCCAGATAAGAACCGAGATTACAGAC CGGTAAGTTTATCAAGTGGCTATTCAAATAGGTGTGTGGTATTTTGTATTTATGTTTGGATCCTGGCTTGATGCAATATT AACAGACTTTTATCTCAACCCATGAAAAGAGTTCCCTTCATTTTTTTGTCTTGAATTGCGTGGGAACGTCCGTTTGCATG ACTACAAATGGATATCCATCATCCTGAGACACCATAACACTCATAGTCTCCTAATTCCCATAAAAAATACATATAGTATT ACATATATCTTTATGGAAATTTAACTTCATACAAATCATGCTAGCAGCAATCCTGAAGTTATTGTTCTATACTGTGATTA GCTAATAGCTATTAGGCTCTGATCTTGTGGTGATAAAAAATATAATTTTATGCAGCGCGTACCAAAGCTCTTCATCAGGA AGCACTTCAATGACATCCAGCAGAGTGAGCAGACAGTAATATTACAGTGCGAAAAGAAATTGTGTCCTGTGAAGTTGACC TGTTATCCAAAAAAAGGTCCAAGCAGGTTGTCCAAAGGTTGGGTCGAATTTGCTAAAAAAAGTAAATTGGAAGTTGGAGA TGCTTGTGTCTTTGAGCTCATCAATAAGGAAGATCCGGTGCTTGATGTTCACATTTACAGAGGTCACTGATATTTGAAGT TGTTAGTACCATAAAAAATGTACCACTGCTTCTAAATGCAATGGACAAAAACATTAAACACCTTTGTTGAATGTTGTCTA CATTGATAAATACTCAGTTAGTCCTGTATGTTCTGCTTCTAAATGCAATGGACATGATTTCTTAATCCCAAGATTGGTTG AAAATGGGCTGATGAGAACGTTTGGTG
CDS sequence (LotjaGi5g1v0052800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGAAACATGCCAAATAATCACTCTCCAATCCTTTTCTTTAAGATCATCACAACGACAAGTATTGAAACTGGAGA GCTTAGGATTCCAAACAATTTCACTAAGAGATATGGTGGTGATATGGCAAACCCAACGTTTCTCAAGCCTCCAGATGGAA CTGATTGGAAAATATATCATAGTAAAACTGATGGGGATGTTTGGTTTCAAAATGGTTGGAAAGATTTTGCGAAATATTAC TCCCTTGATCACGGACACATGGTGTTGTTTGAATACAAGGATACTTCTCATTTTGGGGTACATATATTTGATAAGAGCAC CCTTGAAATAAGATATCCTTCACATGAGAATCAAGATGAAGAGCACAACCCTGATCAGATTGATGATGACTCAGTTGAGA TATTGGATAAGATACCTCCTTGCAAGAAGACTAAACTGAAATCACCAATGTCGTGTCCTAAACCACGCAAGAAATTGAGA ACCAGTACAAGTGAAGATGTTGGAGAAAGCCCTGAATTGCACAACTTACCTAAACAAGTCAAAATTGAAGATGATGCCGG TAGAACCACTGAATGCCTTGAAGGGGAGGACCTAACTTCCAAAATCACTGAAGCTTTGAACAGAGCCAGAACCTTCCAAT CTAAATTTCCCTCCTTCATGACTGTCATGAAACCTGCCTATGTTAATGGATATTCCTTGCATATACCATCATTCTTTGCA AAAAAATATTTGAAGAATGAAACGGATGTCCTCCTGCAAGTCTTGGATGGAAGAACTTGGTCTGTTAGTTTTAACCTCGG CAAATTCAATGCTGGGTGGAAGAAATTCACATCAGTTAATAATTTGAAGGTGGGAGATGTATGTCTTTTTGAGCTAAACA AGAGTGTACCCCTTTCATTGAAAGTATTGATCTTTCCACTTGCAGAAGAACCGCATTCGCTGCCTCGATCACTAGGTGCG GAGACAATTAAAAGAACTTCAAAGCTAATTAGCCCCTGCCCCTTGAAAAATGCTGCTCTGGAAGAAGCTAACAAATTCAA CTCAAACAATCCCTTTTTCATAGTCAATATAGCGCCAGATAAGAACCGAGATTACAGACCGCGCGTACCAAAGCTCTTCA TCAGGAAGCACTTCAATGACATCCAGCAGAGTGAGCAGACAGTAATATTACAGTGCGAAAAGAAATTGTGTCCTGTGAAG TTGACCTGTTATCCAAAAAAAGGTCCAAGCAGGTTGTCCAAAGGTTGGGTCGAATTTGCTAAAAAAAGTAAATTGGAAGT TGGAGATGCTTGTGTCTTTGAGCTCATCAATAAGGAAGATCCGGTGCTTGATGTTCACATTTACAGAGGTCACTGA
Protein sequence (LotjaGi5g1v0052800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRNMPNNHSPILFFKIITTTSIETGELRIPNNFTKRYGGDMANPTFLKPPDGTDWKIYHSKTDGDVWFQNGWKDFAKYY SLDHGHMVLFEYKDTSHFGVHIFDKSTLEIRYPSHENQDEEHNPDQIDDDSVEILDKIPPCKKTKLKSPMSCPKPRKKLR TSTSEDVGESPELHNLPKQVKIEDDAGRTTECLEGEDLTSKITEALNRARTFQSKFPSFMTVMKPAYVNGYSLHIPSFFA KKYLKNETDVLLQVLDGRTWSVSFNLGKFNAGWKKFTSVNNLKVGDVCLFELNKSVPLSLKVLIFPLAEEPHSLPRSLGA ETIKRTSKLISPCPLKNAALEEANKFNSNNPFFIVNIAPDKNRDYRPRVPKLFIRKHFNDIQQSEQTVILQCEKKLCPVK LTCYPKKGPSRLSKGWVEFAKKSKLEVGDACVFELINKEDPVLDVHIYRGH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 307 | 304 | 3.1E-94 | – | |
| PANTHER | 4 | 307 | 304 | 3.1E-94 | – | |
| Gene3D | 6 | 107 | 102 | 6.7E-23 | ||
| SUPERFAMILY | 9 | 106 | 98 | 1.79E-20 | ||
| CDD | 13 | 104 | 92 | 7.92653E-15 | ||
| ProSiteProfiles | 13 | 106 | 94 | 13.169 | ||
| SMART | 14 | 106 | 93 | 3.5E-10 | ||
| Pfam | 14 | 105 | 92 | 7.7E-15 | ||
| MobiDBLite | 144 | 171 | 28 | - | – | |
| Gene3D | 199 | 309 | 111 | 3.5E-26 | ||
| SUPERFAMILY | 212 | 305 | 94 | 1.2E-17 | ||
| CDD | 217 | 306 | 90 | 8.16554E-17 | ||
| ProSiteProfiles | 218 | 306 | 89 | 11.42 | ||
| Pfam | 219 | 305 | 87 | 3.4E-14 | ||
| SMART | 219 | 308 | 90 | 5.1E-14 | ||
| Gene3D | 335 | 450 | 116 | 1.0E-25 | ||
| PANTHER | 336 | 450 | 115 | 3.1E-94 | – | |
| PANTHER | 336 | 450 | 115 | 3.1E-94 | – | |
| SUPERFAMILY | 346 | 449 | 104 | 6.08E-16 | ||
| CDD | 352 | 449 | 98 | 5.6875E-15 | ||
| SMART | 352 | 451 | 100 | 1.4E-5 | ||
| ProSiteProfiles | 352 | 451 | 100 | 9.968 | ||
| Pfam | 352 | 449 | 98 | 4.1E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0052800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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