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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0055500 |
| Transcript ID | LotjaGi5g1v0055500.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial glycoprotein family protein, putative; TAIR: AT4G31930.1 Mitochondrial glycoprotein family protein; Swiss-Prot: sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33; TrEMBL-Plants: tr|I3SGA2|I3SGA2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0055500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9410574..9414469) extracted from Lotus japonicus Gifu genome v1.2.
TGACGACCCTCCGACAGTGCGACTCTTAGAAATCTAACTCTCAACCTAAGGCTACAAACAACTACTTTTTACCATGATGA CCGGTCAGTTGGGTTATTTTGAGCTTTATAATTTAACTTTTTGAGGTAAGGTATAAAAAATACAAAATTTTAAAAGTTGA TAACGAGTTAAGCAATAGGGCCCAATCCATTTTATCTTTGTAGGTCCAAGGCCCAACGATCAAAATACAAAGCCAAATAG CAAGTCCAATTTTCCAGGGATGCAGATTTATAGGAGTTGAATGCTTCTTCTTAATTCTTTGTTCATCCCCAATTTTCAAT TTGATTTGGGAATCTTCTTCTGCAGCATCAATGGCTTCCCTCATTCGAGTGGTTCGAAAGAAAATCAGTAGTAGCTGTTG TTCATCTTCATGGGCGGTTGCGAGAACACTGAGAGTGAGGAACGGTACCTTGGGTTTCGCCAGCAGAGGTTACGCAGAAG TAGCAGCGGTTAAATCTCCATTTGAATCCAACATTTTACGAGTTCTCCGGAACGAGATCGAGTACCAGGCCGAGTACGCT CCTCCACACCAGGTTCTTACTCTTCTTCTTCTTCTTCTTCTTCCAATTTCATTTCCTGTGACTAATTTGATGAATGATTA AGCATCACTGTTTTGGAACATTTTGTGTTAGTTATCAAAGTGTTGCATCTTTTAGTGGTTAGTTTCACTATTTAACAAAC AAATCAACCACCATTCTCACCGTCATCCATAACCGGTAACACTAACGGAGATGCATGACGCTTACGCGAGAAGCGGCTTG TGAAGATTTACGAGGATGAGTGCGATGACAATAAAAATGGCCATGCGGCGGCACCTGAGGAAGCTTCCTGAATCAGCTTT CGATGATTCCTGACTCAATAAGTGGATTGCAAAATCTTGAGGAGCTTAATGTGTCTACAAATGATACATTTGGTCGCCTT CATAATTTGACCAAGCTGAACTTGGAGCAGAACCCTCTTGAAGTGCCATTCATGGTGTCCAAGCCATAAAGTCATTCATG GCCAAGAGGGGGATTGAAATATTGGCAGAGGAAGATAGGAAACACACACAGGAATTTCCAGAAGGACAGAATATGGGTGG CTAACTCGAAGTACCTCCTGGTTGAAGAATGTTTCTGTAAATGTAACTGAGTATCTCAAAACTACCATTATGTCCCCCAA AACTCCCAGAGATGCTTATCTTAATCAGCAGCTATGAGCCTATGAAGTGGTGATCCACTTGTCTACTTTACATCACAATT CCTTTATACTAAATAGCACTGCTGAATTTTTAAAACTAAAATCCTTGACCTTGAGTATGATTGGTCAGCCTTGAAGGTGG GATTCCTCACACCAGTAGTTTTTCTGTATTGATTTGGCTCCTCTAAATTGAGGGAGTTGCGTTAGAGTGTAAAGTAAGTC ATTACATCCTTGATTCAATCAAGGGTTGAGATTTAAAGAACATCATGGTTTGTTACACACTTACACATATGACCTCAATG GTTGATTTCTCAATTAATGGTTATGATGACTTACTTTCTAAAGTGACTCACTCACTTAAGAGGAGCCAAATCCTTTCTTT ACACATAATTCAATGATAATTTCTGATCCAATTTTCAGATAATTGAATGATATTTTTTTCTATTTATCATTAAATAACCA AACAAATATATGATAATTATGCTTCATATAGTAGATATGTGAACATACATAGTCTCACCGCATGTTTGGTTAAGCATTGC TAAGTCCAATTGATAGAGCGATTCTGAAAGCTTATATTATTTGATTCTTATAGAACATGCGATTCTTATAAAACATACGA TTCTCCCATTTTGTTCTTATTGTAGCTTATCGTCAAGGATGAGCTTGTTGTATTGTCTGCAATTCTGCATTGTAAAATTG ACCCATGTTTTCTTTAGGATCATGTCTTTTTATAACTCATGCAGCCTGAGACGAAATTCAATTCGTATACGGTTGAAGAG CGACCTGGAGAGCAGGTGATTACATTGAAGGGGAGGTTTGGGGACAGGGAAGATATCAAAATCGAAGCTACTATGTTTGA TGGGTATGAGCACATTACGGTGCCTGGAGATGACAGTTCTGGGGCAGATGTGCGACTTCACCTCAGTCTACTGGTGGATA TATCCAAGGGGGAAGGTGGCAGTGAATTGGAATTTGTCTGCTCAGCATGGCCAGATTGTTTAGATGTTGAGAAAGTTTAC ATATTAAGGCGTGGTCATATGCCAACTAGGCCTTTCCTGGGACCTAATTTCAGGTTTGAATTACATTTTCACATGCAATT CCAGACATGCTGTTTTTACTATTGTCTACTTTCAAGTTACAACATGAAACGTGGGTTAGAAAAGGGAAAGTTCAGTATAG TTTCACATCAATAAAATATTAAGATAGTGACTAACTTGCCTTTCATTGAGCAACTCTATAAATAATACCTGTACTAGAGT ATCTAAGTTTTGTCATTTGTTGACTTTGTTAATTGGCTCACTGGCCAGAAGATTCATATTTACGTTTCAACTATGAAAGT CTGAATTTAAGAATAAAAACTTGCTTTGCTAAGTGTTGGTTTGCTAATAATTCTTATCTTTTAATTTGTTGAACTCAGGG ACCTGAATCCTAAGGTTCAGGAAAAGTTTCGTGAGTACTTGGACACAAGGGGAGTAAATGATGAACTAGCTGCTTTCTTA CATGATTATATGCTGAACAAGGATAGAATTGAGCTTCTACGGTGGATGGATAGCCTCAAGTCTTTTGTGGAAAAATAGAG TTGGTAAGCTTGCCATCTAGGAATTAATGTAAACACCTAGTTTTGAAACTGTAAGAATTAATTTATCAAGTTATAACACA TTTGATTAGTAGTATTACTATTTAGAATCAGTCTCTTAACAACAAACAAATTGAAGTTTGAATTTGTTTTGTAGGTTGAG ATGTGGTAGTAAGGTAAATGCCCTGTGAATTGATGCCACAGACTATACCTGTAGAACTTTCGTTTGACTTGATTTTCTGA GTAAGGGTAAGACCTAGTTAGCTAAATAACTCGTATCCTTGCGAGCTATATAACTAGTTTGTCTATTTTGTGATGCCCTT GCATTTATCTTCCGTGATTAGGAGTGAGCACGGATTGGATTTTCTTAAAAAGCAAACTAAAATCACTGTTATGGTTATGT TGTGCGATTTAAATTCTTTTTAATTTCCCAAACCAGTTCAATTTTTTCAGAACCGGTTCTGGCTGTTACCAATAATATGG GGTGTGACTGTAGCTGTTGGTCGTCCATCAGTGTCAGAACACAGCCTAAACAGCAGAACGAAGAAGCACCAGTTGGTGGC ATGATGGATTTACTGCTGATTGTAGAGCTACAGCTTGTAATCTATATGACTTGGACTTCATGTGGATCTTTGTTTGGATC AGCCAAATTGCTTGATTCATAAAAAATGAATTTGATCAGTTTTATGAATAAGTGGACTTGACATTTTAAAATGGTTTTGA TTAGTTTTTAGTTTGCTTCAATGAACCGTTATTTTGTGTACCAATACTTCACTTTTTGAGTGTGTTTGGATTGATTGTAG GAAGTGGAATGGGTGGCATGAAGTGGAATGTTTTTATGTTGAATGAGGATAGAATGAAATGGAAGAAGATGAAATACATT CTGTCTCACTCCATTACTTACCATCATAGTTTGGGCTCCTAGAATATGGTGCCCATGGGGCTTTCTATTTGATTGTATCG AAATGCCCAATAAATTGTTTTTTTTTTCAGTCATTCATTGAATGATAAATCACTACAAGTGAAGGAGATACACGATTTAA ATAACGGAAAATCCAATATTTTAAAATTGTATCTAAAATGACTGGTGTTTGAACCT
CDS sequence (LotjaGi5g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCCCTCATTCGAGTGGTTCGAAAGAAAATCAGTAGTAGCTGTTGTTCATCTTCATGGGCGGTTGCGAGAACACT GAGAGTGAGGAACGGTACCTTGGGTTTCGCCAGCAGAGGTTACGCAGAAGTAGCAGCGGTTAAATCTCCATTTGAATCCA ACATTTTACGAGTTCTCCGGAACGAGATCGAGTACCAGGCCGAGTACGCTCCTCCACACCAGCCTGAGACGAAATTCAAT TCGTATACGGTTGAAGAGCGACCTGGAGAGCAGGTGATTACATTGAAGGGGAGGTTTGGGGACAGGGAAGATATCAAAAT CGAAGCTACTATGTTTGATGGGTATGAGCACATTACGGTGCCTGGAGATGACAGTTCTGGGGCAGATGTGCGACTTCACC TCAGTCTACTGGTGGATATATCCAAGGGGGAAGGTGGCAGTGAATTGGAATTTGTCTGCTCAGCATGGCCAGATTGTTTA GATGTTGAGAAAGTTTACATATTAAGGCGTGGTCATATGCCAACTAGGCCTTTCCTGGGACCTAATTTCAGGGACCTGAA TCCTAAGGTTCAGGAAAAGTTTCGTGAGTACTTGGACACAAGGGGAGTAAATGATGAACTAGCTGCTTTCTTACATGATT ATATGCTGAACAAGGATAGAATTGAGCTTCTACGGTGGATGGATAGCCTCAAGTCTTTTGTGGAAAAATAG
Protein sequence (LotjaGi5g1v0055500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLIRVVRKKISSSCCSSSWAVARTLRVRNGTLGFASRGYAEVAAVKSPFESNILRVLRNEIEYQAEYAPPHQPETKFN SYTVEERPGEQVITLKGRFGDREDIKIEATMFDGYEHITVPGDDSSGADVRLHLSLLVDISKGEGGSELEFVCSAWPDCL DVEKVYILRRGHMPTRPFLGPNFRDLNPKVQEKFREYLDTRGVNDELAAFLHDYMLNKDRIELLRWMDSLKSFVEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 236 | 236 | 3.2E-104 | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 236 | 236 | 3.2E-104 | ||
| Gene3D | 51 | 235 | 185 | 8.9E-42 | ||
| SUPERFAMILY | 51 | 235 | 185 | 5.36E-39 | ||
| Pfam | 60 | 234 | 175 | 8.3E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. |
Expression pattern of LotjaGi5g1v0055500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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