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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0055500 |
| Transcript ID | LotjaGi5g1v0055500.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial glycoprotein family protein, putative; TAIR: AT4G31930.1 Mitochondrial glycoprotein family protein; Swiss-Prot: sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33; TrEMBL-Plants: tr|I3SNM5|I3SNM5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0055500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9410591..9414344) extracted from Lotus japonicus Gifu genome v1.2.
GTAAGGTATAAAAAATACAAAATTTTAAAAGTTGATAACGAGTTAAGCAATAGGGCCCAATCCATTTTATCTTTGTAGGT CCAAGGCCCAACGATCAAAATACAAAGCCAAATAGCAAGTCCAATTTTCCAGGGATGCAGATTTATAGGAGTTGAATGCT TCTTCTTAATTCTTTGTTCATCCCCAATTTTCAATTTGATTTGGGAATCTTCTTCTGCAGCATCAATGGCTTCCCTCATT CGAGTGGTTCGAAAGAAAATCAGTAGTAGCTGTTGTTCATCTTCATGGGCGGTTGCGAGAACACTGAGAGTGAGGAACGG TACCTTGGGTTTCGCCAGCAGAGGTTACGCAGAAGTAGCAGCGGTTAAATCTCCATTTGAATCCAACATTTTACGAGTTC TCCGGAACGAGATCGAGTACCAGGCCGAGTACGCTCCTCCACACCAGGTTCTTACTCTTCTTCTTCTTCTTCTTCTTCCA ATTTCATTTCCTGTGACTAATTTGATGAATGATTAAGCATCACTGTTTTGGAACATTTTGTGTTAGTTATCAAAGTGTTG CATCTTTTAGTGGTTAGTTTCACTATTTAACAAACAAATCAACCACCATTCTCACCGTCATCCATAACCGGTAACACTAA CGGAGATGCATGACGCTTACGCGAGAAGCGGCTTGTGAAGATTTACGAGGATGAGTGCGATGACAATAAAAATGGCCATG CGGCGGCACCTGAGGAAGCTTCCTGAATCAGCTTTCGATGATTCCTGACTCAATAAGTGGATTGCAAAATCTTGAGGAGC TTAATGTGTCTACAAATGATACATTTGGTCGCCTTCATAATTTGACCAAGCTGAACTTGGAGCAGAACCCTCTTGAAGTG CCATTCATGGTGTCCAAGCCATAAAGTCATTCATGGCCAAGAGGGGGATTGAAATATTGGCAGAGGAAGATAGGAAACAC ACACAGGAATTTCCAGAAGGACAGAATATGGGTGGCTAACTCGAAGTACCTCCTGGTTGAAGAATGTTTCTGTAAATGTA ACTGAGTATCTCAAAACTACCATTATGTCCCCCAAAACTCCCAGAGATGCTTATCTTAATCAGCAGCTATGAGCCTATGA AGTGGTGATCCACTTGTCTACTTTACATCACAATTCCTTTATACTAAATAGCACTGCTGAATTTTTAAAACTAAAATCCT TGACCTTGAGTATGATTGGTCAGCCTTGAAGGTGGGATTCCTCACACCAGTAGTTTTTCTGTATTGATTTGGCTCCTCTA AATTGAGGGAGTTGCGTTAGAGTGTAAAGTAAGTCATTACATCCTTGATTCAATCAAGGGTTGAGATTTAAAGAACATCA TGGTTTGTTACACACTTACACATATGACCTCAATGGTTGATTTCTCAATTAATGGTTATGATGACTTACTTTCTAAAGTG ACTCACTCACTTAAGAGGAGCCAAATCCTTTCTTTACACATAATTCAATGATAATTTCTGATCCAATTTTCAGATAATTG AATGATATTTTTTTCTATTTATCATTAAATAACCAAACAAATATATGATAATTATGCTTCATATAGTAGATATGTGAACA TACATAGTCTCACCGCATGTTTGGTTAAGCATTGCTAAGTCCAATTGATAGAGCGATTCTGAAAGCTTATATTATTTGAT TCTTATAGAACATGCGATTCTTATAAAACATACGATTCTCCCATTTTGTTCTTATTGTAGCTTATCGTCAAGGATGAGCT TGTTGTATTGTCTGCAATTCTGCATTGTAAAATTGACCCATGTTTTCTTTAGGATCATGTCTTTTTATAACTCATGCAGC CTGAGACGAAATTCAATTCGTATACGGTTGAAGAGCGACCTGGAGAGCAGGTGATTACATTGAAGGGGAGGTTTGGGGAC AGGGAAGATATCAAAATCGAAGCTACTATGTTTGATGGGTATGAGCACATTACGGTGCCTGGAGATGACAGTTCTGGGGC AGATGTGCGACTTCACCTCAGTCTACTGGTGGATATATCCAAGGGGGAAGGTGGCAGTGAATTGGAATTTGTCTGCTCAG CATGGCCAGATTGTTTAGATGTTGAGAAAGTTTACATATTAAGGCGTGGTCATATGCCAACTAGGCCTTTCCTGGGACCT AATTTCAGGTTTGAATTACATTTTCACATGCAATTCCAGACATGCTGTTTTTACTATTGTCTACTTTCAAGTTACAACAT GAAACGTGGGTTAGAAAAGGGAAAGTTCAGTATAGTTTCACATCAATAAAATATTAAGATAGTGACTAACTTGCCTTTCA TTGAGCAACTCTATAAATAATACCTGTACTAGAGTATCTAAGTTTTGTCATTTGTTGACTTTGTTAATTGGCTCACTGGC CAGAAGATTCATATTTACGTTTCAACTATGAAAGTCTGAATTTAAGAATAAAAACTTGCTTTGCTAAGTGTTGGTTTGCT AATAATTCTTATCTTTTAATTTGTTGAACTCAGGGACCTGAATCCTAAGGTTCAGGAAAAGTTTCGTGAGTACTTGGACA CAAGGGGAGTAAATGATGAACTAGCTGCTTTCTTACATGATTATATGCTGAACAAGGATAGAATTGAGCTTCTACGGTGG ATGGATAGCCTCAAGTCTTTTGTGGAAAAATAGAGTTGGTAAGCTTGCCATCTAGGAATTAATGTAAACACCTAGTTTTG AAACTGTAAGAATTAATTTATCAAGTTATAACACATTTGATTAGTAGTATTACTATTTAGAATCAGTCTCTTAACAACAA ACAAATTGAAGTTTGAATTTGTTTTGTAGGTTGAGATGTGGTAGTAAGGTAAATGCCCTGTGAATTGATGCCACAGACTA TACCTGTAGAACTTTCGTTTGACTTGATTTTCTGAGTAAGGGTAAGACCTAGTTAGCTAAATAACTCGTATCCTTGCGAG CTATATAACTAGTTTGTCTATTTTGTGATGCCCTTGCATTTATCTTCCGTGATTAGGAGTGAGCACGGATTGGATTTTCT TAAAAAGCAAACTAAAATCACTGTTATGGTTATGTTGTGCGATTTAAATTCTTTTTAATTTCCCAAACCAGTTCAATTTT TTCAGAACCGGTTCTGGCTGTTACCAATAATATGGGGTGTGACTGTAGCTGTTGGTCGTCCATCAGTGTCAGAACACAGC CTAAACAGCAGAACGAAGAAGCACCAGTTGGTGGCATGATGGATTTACTGCTGATTGTAGAGCTACAGCTTGTAATCTAT ATGACTTGGACTTCATGTGGATCTTTGTTTGGATCAGCCAAATTGCTTGATTCATAAAAAATGAATTTGATCAGTTTTAT GAATAAGTGGACTTGACATTTTAAAATGGTTTTGATTAGTTTTTAGTTTGCTTCAATGAACCGTTATTTTGTGTACCAAT ACTTCACTTTTTGAGTGTGTTTGGATTGATTGTAGGAAGTGGAATGGGTGGCATGAAGTGGAATGTTTTTATGTTGAATG AGGATAGAATGAAATGGAAGAAGATGAAATACATTCTGTCTCACTCCATTACTTACCATCATAGTTTGGGCTCCTAGAAT ATGGTGCCCATGGGGCTTTCTATTTGATTGTATCGAAATGCCCAATAAATTGTTTTTTTTTTCAGTCATTCATTGAATGA TAAATCACTACAAGTGAAGGAGATACACGATTTAAATAACGGAAAATCCAATATTTTAAAATTGTATCTAAAAT
CDS sequence (LotjaGi5g1v0055500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGCCTGAGACGAAATTCAATTCGTATACGGTTGAAGAGCGACCTGGAGAGCAGGTGATTACATTGAAGGGGAGGTT TGGGGACAGGGAAGATATCAAAATCGAAGCTACTATGTTTGATGGGTATGAGCACATTACGGTGCCTGGAGATGACAGTT CTGGGGCAGATGTGCGACTTCACCTCAGTCTACTGGTGGATATATCCAAGGGGGAAGGTGGCAGTGAATTGGAATTTGTC TGCTCAGCATGGCCAGATTGTTTAGATGTTGAGAAAGTTTACATATTAAGGCGTGGTCATATGCCAACTAGGCCTTTCCT GGGACCTAATTTCAGGGACCTGAATCCTAAGGTTCAGGAAAAGTTTCGTGAGTACTTGGACACAAGGGGAGTAAATGATG AACTAGCTGCTTTCTTACATGATTATATGCTGAACAAGGATAGAATTGAGCTTCTACGGTGGATGGATAGCCTCAAGTCT TTTGTGGAAAAATAG
Protein sequence (LotjaGi5g1v0055500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQPETKFNSYTVEERPGEQVITLKGRFGDREDIKIEATMFDGYEHITVPGDDSSGADVRLHLSLLVDISKGEGGSELEFV CSAWPDCLDVEKVYILRRGHMPTRPFLGPNFRDLNPKVQEKFREYLDTRGVNDELAAFLHDYMLNKDRIELLRWMDSLKS FVEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 163 | 163 | 2.4E-39 | ||
| PANTHER | 2 | 164 | 163 | 1.5E-81 | – | |
| PANTHER | 2 | 164 | 163 | 1.5E-81 | ||
| SUPERFAMILY | 3 | 163 | 161 | 1.57E-33 | ||
| Pfam | 8 | 162 | 155 | 1.7E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Mitochondrial matrix | The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation. |
Expression pattern of LotjaGi5g1v0055500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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