Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0056700 |
| Transcript ID | LotjaGi5g1v0056700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein, putative; TAIR: AT1G06620.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1; TrEMBL-Plants: tr|I3SCV0|I3SCV0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0056700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:9643932..9647102) extracted from Lotus japonicus Gifu genome v1.2.
CCGAATTTTTTCGGAACATAAACTTCCATAGGTAAGTCGAGATCATATTTCTATGATGTTTCGGAACATCATGTTTCTAA TATATTTCGAAATGTTATCTTCCGAATGGTACATCTGCCATTTTTTTAAAAAGTCTGGGTGTTAGATCTATTGCCCGGGT GGCAAATCTAACACCCCATAATAGGTAGCTAGAATGGTCTTATATAATAGTTCTGTGGCTATTTTTCTCCTACTTGTTCT CAAGAAGGCTTCAGAGTACAAGATTTCCACTACAAATTAACAGAAGAAACATGGAGGGTTCTGCCACTATAAGAGATGAA ATTGAAGGAACAGTCAAGGTCAATTCTGATAGGCTTCGTGAGCTCCAAGCATTTGATGAAACTAAAGCTGGTGTTAAAGG CCTTATTGATGAAGGGATAACAAAGATCCCAAGCTTATTTCATCATCCACCAGATAAGTTTGTGAAGGCCTCAAACTCAG ACAAAACAGAACATGTTATTCCTGTTATAGACCTTGCAAACGTTGGAAAAGATCCAAGTGAACGCGAAGAAGTTATCAGC AAAATAAGGGAAGCATGTGAGACTTGGGGTTTCTTTCAAGTGGCTAATCATGGCATCCATGTGAGTCTTCTAGAGGAAAT GAAAGAAGGGGTGCGTAGATTTTATGAACAAGATGCTGAGGTAAAAAAGGAGCTATATTCTCGTGACCAGAAGAGGCCAG TGGTGTATAATAGCAATTATGATCTGTATAGTTCACCAGCACTCAATTGGAGAGACACTTTTGTGTGTGACCTTGCTCCT AATCCTCCCAAACCAGAAGACTTGCCTGTAGCATGCAGGTAATTGAGTTCATGTTTGAAAACTATTTTGTGATAATTCAA TTTCTATATAACTTGATTTCTTACCATAGTTCAATTGTGATTAATCTCATTTCATTGAAAAGGGACTAAAGAATTCTGAT TGAAGCTTATCTACTAGAAAAAACACTCAATAAGCTCCAATTATATATAACCTGATTTCTTGACTATAAATCAACTGTGA TTAATGTTACGAACTAAAGAACACTGACTCTGGAGCTTATGTACTAGAAAAAACACTCAATAAGCTCCAATTAATAAGTG TTATTTGATCCCAATCCAAGCAAGCTCTATGCATAAGAGCTTCAGCGATTTAGGCTGTGTTTGGATACGTGTTGACACAT GTGCAAATGCACTTTAGCACTCATATCAAGACAAAAAGTGAAGGAATTCTTCTTATGGATTATGATGAAAGTCCATCCAC ATTGCGGTCAACTGGGCATCCATCCAAACACACACTTAATCATGAGTTTGATTTTTGAAAATTGTGTTCGAATTCTGCTC AAATTCCAAGCTACTTTCATCAAGGTGTTATAGCTTCAGATGTTTAGGTTTGTGTGATATTAATATGCATAAAATCTACA AAGGATCATCTCTTTTTCCTGGATAAGATTCTCAGAACCTCCCAGAGGCACAATAGGCTATAAAGTGTGTCTACTTTCTC CTTTTAGGTACGTGAAGAATTATGAATCAAGGCTGTAAAATGAAACTAGAAGAACAATTGAACAAGCAAAGACAAGTTAA AGTTTCTATTTCGAGTTTTCTACTTCAGGCATGTAATTTCTTGCTGACTGCCTATTCTTCTTGCAGGGATATACTTCTAG AATATGGAACCAATGTGATGAGACTAGGAATTGTACTCTTTGAGTTACTATCAGAAGCTCTTGGCCTACATCCAAACCAT TTAAAAGACATGAGTTGTACTGAGGGGCTTTTTTCACTTTGCCACTACTACCCTGCATGCCCTGAACCAGATTTAACTAT GGGAACTACAAAACATTCTGATGGTTCTTTTCTGACAGTGCTCCTCCAGGACCATATTGGTGGTCTCCAGGTTCTTTACC AGGACAAGTGGGTTGATATACCTCCAGTACCTGGGGCTCTTGTTGTTAACATTGGTGACCTTTTGCAGGCAAGTTCTCTG TTGCTATTCTTCTGCCTGAGTATATTTTGGATTTGAAATTTTCAATACCCAATCTGTGTCTTGTTCTCTGTCTCGCTGAC AAAAATTTGACATATCAATTAAAAACAATCATGTAAGTTTCCTACTGTCCCGCTCATGATTTTTAATTGACATGGTAAGA TTTCGTTGGTGGGACATGAAATTGAGACACTATTTGGACTTGTTCCTCAGTTAATTTCCTGTTATAATTATTATGGATGT GTATTGCATCTGCAGCTTCATTGCCACAAATTAATACACTTTCCTATGGTTACATTAAAATGGCAAGTCTTGGTTTTTAA TATTTATCATTTCTCTTACCTGTTCAAACTGCAATTAGGATTATCACATTAATCTTACTGAGCAATAATAATAGAGAACC ATACCTCAAAAGTCTTATAATTATAAAGATCAAACTAGAATCTCATACTTCCAATGCGGGACTTAAGTCCCATATCTTGC GGTTGGATCCTAACAAATACCCAAAACAATGCCATATTTGAAGCAATATCTTGACCCAGTTAAAAGCAAAGGCCAATCTG CTCTTTTGCAAGTTTTTATTGTATGTAAAAATGAACTTATATGAATGTAACTAACTGTTATTTTTGTTGAACTACACAGC TTATAACAAATGACAGATTCAAGAGTGTGGAACACCGAGTACTGGCGAATCGCATTGGTCCAAGAATATCTGTTGCAATG TTTTTCAGGTCTGGCCTTCAATCATCAACCAAGCTCTATGGACCCATAAAAGAATTATCATCAGAAAACAATCCCCCCAA ATACAGAGAAACCACATTTGATGATTATATGGCCTACTTCGATGCAAAAGGCCTTGATGGGATCTCTAAACTTCTACATT TCAGGCTTTGAGTTGGATAGTGAAGATTGAAGTGGTTTATTTAGCAGGACAAATGAATAAACTAAGTTGCAAACAATAAT GTTCAATCAAATTCCATATATATGACTGTGGCTTGGACTCAAAATTTGGTATTTTGATTATGTTGTGCAGCTGAGATACT ACTAAGTAACTCCTATTTACATGGTTTGATTTTGGTTTTAAATCATCATGAGTGAAACTAGAATCTTTGCTTCTGTTTAT TCTATTTATTTTGATTTTCACATGAAACTACACAGTTGTGAAATTATGCTT
CDS sequence (LotjaGi5g1v0056700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGGTTCTGCCACTATAAGAGATGAAATTGAAGGAACAGTCAAGGTCAATTCTGATAGGCTTCGTGAGCTCCAAGC ATTTGATGAAACTAAAGCTGGTGTTAAAGGCCTTATTGATGAAGGGATAACAAAGATCCCAAGCTTATTTCATCATCCAC CAGATAAGTTTGTGAAGGCCTCAAACTCAGACAAAACAGAACATGTTATTCCTGTTATAGACCTTGCAAACGTTGGAAAA GATCCAAGTGAACGCGAAGAAGTTATCAGCAAAATAAGGGAAGCATGTGAGACTTGGGGTTTCTTTCAAGTGGCTAATCA TGGCATCCATGTGAGTCTTCTAGAGGAAATGAAAGAAGGGGTGCGTAGATTTTATGAACAAGATGCTGAGGTAAAAAAGG AGCTATATTCTCGTGACCAGAAGAGGCCAGTGGTGTATAATAGCAATTATGATCTGTATAGTTCACCAGCACTCAATTGG AGAGACACTTTTGTGTGTGACCTTGCTCCTAATCCTCCCAAACCAGAAGACTTGCCTGTAGCATGCAGGGATATACTTCT AGAATATGGAACCAATGTGATGAGACTAGGAATTGTACTCTTTGAGTTACTATCAGAAGCTCTTGGCCTACATCCAAACC ATTTAAAAGACATGAGTTGTACTGAGGGGCTTTTTTCACTTTGCCACTACTACCCTGCATGCCCTGAACCAGATTTAACT ATGGGAACTACAAAACATTCTGATGGTTCTTTTCTGACAGTGCTCCTCCAGGACCATATTGGTGGTCTCCAGGTTCTTTA CCAGGACAAGTGGGTTGATATACCTCCAGTACCTGGGGCTCTTGTTGTTAACATTGGTGACCTTTTGCAGCTTATAACAA ATGACAGATTCAAGAGTGTGGAACACCGAGTACTGGCGAATCGCATTGGTCCAAGAATATCTGTTGCAATGTTTTTCAGG TCTGGCCTTCAATCATCAACCAAGCTCTATGGACCCATAAAAGAATTATCATCAGAAAACAATCCCCCCAAATACAGAGA AACCACATTTGATGATTATATGGCCTACTTCGATGCAAAAGGCCTTGATGGGATCTCTAAACTTCTACATTTCAGGCTTT GA
Protein sequence (LotjaGi5g1v0056700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGSATIRDEIEGTVKVNSDRLRELQAFDETKAGVKGLIDEGITKIPSLFHHPPDKFVKASNSDKTEHVIPVIDLANVGK DPSEREEVISKIREACETWGFFQVANHGIHVSLLEEMKEGVRRFYEQDAEVKKELYSRDQKRPVVYNSNYDLYSSPALNW RDTFVCDLAPNPPKPEDLPVACRDILLEYGTNVMRLGIVLFELLSEALGLHPNHLKDMSCTEGLFSLCHYYPACPEPDLT MGTTKHSDGSFLTVLLQDHIGGLQVLYQDKWVDIPPVPGALVVNIGDLLQLITNDRFKSVEHRVLANRIGPRISVAMFFR SGLQSSTKLYGPIKELSSENNPPKYRETTFDDYMAYFDAKGLDGISKLLHFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 367 | 355 | 9.6E-120 | – | |
| PANTHER | 13 | 367 | 355 | 9.6E-120 | – | |
| Gene3D | 25 | 356 | 332 | 7.9E-113 | ||
| SUPERFAMILY | 32 | 362 | 331 | 2.13E-98 | – | |
| Pfam | 70 | 170 | 101 | 1.7E-21 | ||
| ProSiteProfiles | 220 | 321 | 102 | 15.194 | ||
| Pfam | 225 | 320 | 96 | 1.2E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0056700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…