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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0060200 |
| Transcript ID | LotjaGi5g1v0060200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT2G25490.1 EIN3-binding F box protein 1; Swiss-Prot: sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1; TrEMBL-Plants: tr|G7I706|G7I706_MEDTR EIN3-binding F-box-like protein; Found in the gene: LotjaGi5g1v0060200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10119868..10121802) extracted from Lotus japonicus Gifu genome v1.2.
TTTGGTAATCTGTTTGGGTTCTCAGGAACTGATGATTTTTGCCCTGGGGGGACAATATACACAAACCCCAAGGAAGCAAG TTTCTTCCTGTCTCATGGCCTTCCAGTTGATGTATACTTTCCTGCTCGGAAAAGGTCACGAATCAGTGCTCCATTTGTTT TCAGCAGAGAATGGTTGGAGCAGAAGCAGGAGACATCTATTGAAACTTTGCCAGATGAATGCCTGTTTGAAATCTTCAGG AAGTTGCCAGGTGAAGATAGGAGTGCATGTGCTTGCGTTTCCAAGCACTGGCTTATGCTTCTAAGCAATATTTGCAAGAC TGAAATCTGTAGCAACAAAAATGCAAGCTTAGAGAATGAGAGTAAACAGGAAAAAGATGATGAAGAGTTTGGAGGTGAGG GATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACTGATATTAGACTTGCTGCCATTGCAGTTGGAACTGCATCCCGA GGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGGTCGTGGGGTGACTACTCTAGGTCTCAAAGCAGTTGCTCG TGGATGCCCTTCTTTAAAGTCTCTTTCTTTATGGAATGTTTCTACTGTTAGTGATGAAGGCCTAATTGAGATTGCTAATA GTTGTCAACAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTACAATTTCTGATAAGTCTTTAATTGCAGTTGCAAAGAAC TGCCCGAATCTCACTGAGTTATCAATAGAACTGTGTCCAAAAATTGGCAATGAAGGTCTACAAGCCATTGGGAAGTGCTG CTCCAATCTAAGGTCTATATCTATCAAGGACTGCACTGGTGTTGGTGATCAGGGAATTGCTGGCCTGTTTTCTTCAACTT CTTTGGTTCTGTCAAAGGTGAAGCTTCAGGCACTGACTGTTTCTGATCTCTCCATAGCTGTTATTGGGCATTATGGTAAA GCAGTTACAGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTTTGGGTTATGGGTAATGGTAATGGATT GCACAAACTCAAGTCACTTACAATTGCATCCTGCAGAGGTGTAACAGATGTTGGGATTGAAGCTGTAGGAAAAGGTTGTC CAAATCTGAAAAGTGTACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGTTGATTTCATTCACCAAGGCTGCTTCA TCACTTGAAAACCTACAGTTAGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTTGGTGTCCTTTTTAACTGTGGTGC AAAATTGAAGGCTATTTCTATGGTAAGCTGCTATGGGATCAAAGATCAAAACTTGGTGTTGTCACCCATATCTCCTTGTG AATCACTTCGGTCACTGTCAATCCGTCACTGCCCCGAATTTGGCAATGCTACCCTGTCTGTACTGGGAAAGCTATGCCCT CAGCTTCAACAAATTGAATTGAGTGGACTCAAGGAAGTGACAGATGCTGGGTTACTTCCACTGGTTGAGAGTTGTGAGGC TGGTCTGATCAAAGTTAATCTTCATGGTTGCATAAACCTTACAGACAAAATTGTTTCATACTTGGCTAATCTTCATGGTT GGACTCTTGAGGTTTTGAACGTCGACGGTTGTAAAAATGTCAGTGATGCTAGCTTGATGGCAATTGCAGAACATTGCCAA TTACTTTGTGATCTTGATGTTTCCAACTGTGCAATCACTGATGCTGGGATAGCAGCCTTAGCACATGCAGAACAGTTGAA TTTGCAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTTCGGACAGGAGCTTGCCGTCTTTGAGAAAATTGGGCCACACCC TTTTGGGACTTAATATCCAGCATTGCAATGCAATCAGCAGCAGCACGGTTGACATGCTTGTGGAATTTCTCTGGAGGTGT GACATTCTCTCATGA
CDS sequence (LotjaGi5g1v0060200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCTAAGCAATATTTGCAAGACTGAAATCTGTAGCAACAAAAATGCAAGCTTAGAGAATGAGAGTAAACAGGAAAA AGATGATGAAGAGTTTGGAGGTGAGGGATACCTCTCTCGAAGCTTGGAAGGAAAGAAGGCAACTGATATTAGACTTGCTG CCATTGCAGTTGGAACTGCATCCCGAGGAGGATTGGGGAAGCTTTCAATCCGTGGAAGCAACTCAGGTCGTGGGGTGACT ACTCTAGGTCTCAAAGCAGTTGCTCGTGGATGCCCTTCTTTAAAGTCTCTTTCTTTATGGAATGTTTCTACTGTTAGTGA TGAAGGCCTAATTGAGATTGCTAATAGTTGTCAACAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTACAATTTCTGATA AGTCTTTAATTGCAGTTGCAAAGAACTGCCCGAATCTCACTGAGTTATCAATAGAACTGTGTCCAAAAATTGGCAATGAA GGTCTACAAGCCATTGGGAAGTGCTGCTCCAATCTAAGGTCTATATCTATCAAGGACTGCACTGGTGTTGGTGATCAGGG AATTGCTGGCCTGTTTTCTTCAACTTCTTTGGTTCTGTCAAAGGTGAAGCTTCAGGCACTGACTGTTTCTGATCTCTCCA TAGCTGTTATTGGGCATTATGGTAAAGCAGTTACAGATCTTGTCCTTAATTGCCTCCCAAATGTCAGTGAGAGGGGGTTT TGGGTTATGGGTAATGGTAATGGATTGCACAAACTCAAGTCACTTACAATTGCATCCTGCAGAGGTGTAACAGATGTTGG GATTGAAGCTGTAGGAAAAGGTTGTCCAAATCTGAAAAGTGTACACCTTCACAAGTGTGCCTTTCTGTCAGACAATGGGT TGATTTCATTCACCAAGGCTGCTTCATCACTTGAAAACCTACAGTTAGAAGAGTGCCACAGAATTACCCAATTTGGGTTT TTTGGTGTCCTTTTTAACTGTGGTGCAAAATTGAAGGCTATTTCTATGGTAAGCTGCTATGGGATCAAAGATCAAAACTT GGTGTTGTCACCCATATCTCCTTGTGAATCACTTCGGTCACTGTCAATCCGTCACTGCCCCGAATTTGGCAATGCTACCC TGTCTGTACTGGGAAAGCTATGCCCTCAGCTTCAACAAATTGAATTGAGTGGACTCAAGGAAGTGACAGATGCTGGGTTA CTTCCACTGGTTGAGAGTTGTGAGGCTGGTCTGATCAAAGTTAATCTTCATGGTTGCATAAACCTTACAGACAAAATTGT TTCATACTTGGCTAATCTTCATGGTTGGACTCTTGAGGTTTTGAACGTCGACGGTTGTAAAAATGTCAGTGATGCTAGCT TGATGGCAATTGCAGAACATTGCCAATTACTTTGTGATCTTGATGTTTCCAACTGTGCAATCACTGATGCTGGGATAGCA GCCTTAGCACATGCAGAACAGTTGAATTTGCAGATTCTTTCTCTGTCAGGTTGCACTTTGGTTTCGGACAGGAGCTTGCC GTCTTTGAGAAAATTGGGCCACACCCTTTTGGGACTTAATATCCAGCATTGCAATGCAATCAGCAGCAGCACGGTTGACA TGCTTGTGGAATTTCTCTGGAGGTGTGACATTCTCTCATGA
Protein sequence (LotjaGi5g1v0060200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLSNICKTEICSNKNASLENESKQEKDDEEFGGEGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLSIRGSNSGRGVT TLGLKAVARGCPSLKSLSLWNVSTVSDEGLIEIANSCQQLEKLDLCKCPTISDKSLIAVAKNCPNLTELSIELCPKIGNE GLQAIGKCCSNLRSISIKDCTGVGDQGIAGLFSSTSLVLSKVKLQALTVSDLSIAVIGHYGKAVTDLVLNCLPNVSERGF WVMGNGNGLHKLKSLTIASCRGVTDVGIEAVGKGCPNLKSVHLHKCAFLSDNGLISFTKAASSLENLQLEECHRITQFGF FGVLFNCGAKLKAISMVSCYGIKDQNLVLSPISPCESLRSLSIRHCPEFGNATLSVLGKLCPQLQQIELSGLKEVTDAGL LPLVESCEAGLIKVNLHGCINLTDKIVSYLANLHGWTLEVLNVDGCKNVSDASLMAIAEHCQLLCDLDVSNCAITDAGIA ALAHAEQLNLQILSLSGCTLVSDRSLPSLRKLGHTLLGLNIQHCNAISSSTVDMLVEFLWRCDILS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 532 | 532 | 1.1E-264 | – | |
| PANTHER | 1 | 532 | 532 | 1.1E-264 | – | |
| Gene3D | 41 | 154 | 114 | 8.1E-23 | ||
| SUPERFAMILY | 76 | 317 | 242 | 3.34E-36 | – | |
| SMART | 91 | 116 | 26 | 0.0012 | ||
| SMART | 117 | 142 | 26 | 1.1E-5 | ||
| Pfam | 142 | 165 | 24 | 0.0078 | ||
| SMART | 143 | 168 | 26 | 1.6E-5 | ||
| Gene3D | 155 | 347 | 193 | 6.5E-32 | ||
| SMART | 169 | 194 | 26 | 0.0042 | ||
| SUPERFAMILY | 216 | 542 | 327 | 4.97E-32 | – | |
| SMART | 249 | 274 | 26 | 0.0018 | ||
| Pfam | 250 | 271 | 22 | 1.0 | ||
| SMART | 275 | 300 | 26 | 0.02 | ||
| SMART | 301 | 326 | 26 | 90.0 | ||
| Gene3D | 348 | 408 | 61 | 4.9E-10 | ||
| SMART | 355 | 380 | 26 | 0.58 | ||
| SMART | 381 | 406 | 26 | 2.2 | ||
| SMART | 408 | 433 | 26 | 130.0 | ||
| Gene3D | 409 | 468 | 60 | 5.5E-11 | ||
| SMART | 435 | 460 | 26 | 33.0 | ||
| SMART | 461 | 485 | 25 | 7.9 | ||
| Pfam | 464 | 483 | 20 | 0.063 | ||
| Gene3D | 469 | 545 | 77 | 3.8E-8 | ||
| SMART | 487 | 512 | 26 | 3.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0060200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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