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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0061200 |
| Transcript ID | LotjaGi5g1v0061200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tesmin/TSO1-like CXC domain-containing protein; TAIR: AT4G14770.1 TESMIN/TSO1-like CXC 2; Swiss-Prot: sp|F4JIF5|TCX2_ARATH Protein tesmin/TSO1-like CXC 2; TrEMBL-Plants: tr|Q705X1|Q705X1_LOTJA Cysteine-rich polycomb-like protein; Found in the gene: LotjaGi5g1v0061200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10224443..10230574) extracted from Lotus japonicus Gifu genome v1.2.
CGACAACAATCAACAACACCAAAAAAGAAAAAGAAAAAGAAAACGAGAGAGAAGAAAAATAAAATAAAAAAGATAAAAAT GAGTGACTGAATAAGAGTGATGCAGTCACTGTAGGGTTTAATTCTTCTTCATCTTCATCTTCATCTTCACAAGAAAGACG AAGAACAAGTGTGATTTATTGTTGTGAGTGATGATGGATTCTCCAGAACCTTCCAAGATCAATCGCAGTTCTTCTGCTTC TGCTCTCAATGCCTCCGTCAATACTCCTTCATCCGAATCCCCTCAAGTTCAAGTAATTCCGAACACACACAAACACTCCT TTACTTTTGGATTCATTTTTGCAATTAATTGTACTGATTCATGTTGTGTTCTGCCTGCTTAATCACTTCAATTAGGGTTT TAATTTGATTTCACTCAATTTTGTTGGATTAATTGCTGTTTGCTTGCTCATCATGCGCTCTGGTGTTAATTAACTGTGTC AGGAATCTTGTGAAGTAACGAATTCAGTTCATTTTGATTCATGATTTCTTCTAAGAAACTGGTTTGTTTAAGAGCTCACT TCGTTTGATTGGATTTGTGAATCAAGGTCAATGCCGTCGCGGCTAGAAATCACTGTTGGTGGTGTTTTTTTGTGTTTATT TTGTTTTGCCCCCTTTTCGAGCTGTTTTGGAAATTGCTTTAATGATGATGATCTATCTTCTAAATTGCTTTAATGGCGTT GGAATGTTGAATGATGAAAACAAATGAAATGGAAGACCTTCGATTATGGAAGTATTGGTAGACTTTAGAGAGGATTCATT CATTCACATTGATTATTGATATCTTGCTCTTGTCCTGATTCTTGATTTCATTTGCAATATCATAGCTACTGTGTTAATTT CGTGTGTCACCTTCTTAATTTCAGGAGTCCCCATTTTTTAGATTTGCCAGCAATTTATCTCCGATGAGGCCTGCTAAGGC TTGTCATGTGGCACCAAGTTTTCTTGGGCTTAATTCCCCACCTCTGGTGTTCAAGTCGCCACGTGTTAATTGTGACCGTG AATCGCGGTACTTGGAAAGGTTTGTGACTTCAAATTTGTGTGTGTTTATTATTTTCTGGCTGCTTGTTGACAAAATTAAT GTGTGTCAGGCCTCAAGGCACTCATTTATCCAGTGTAGAAATGTCTCAAAGTTACAATGGAGGCAACAGTCTTCGTGTAG CTCCTGGTGATTCCAATGAATCAAATTCTCAACTGCCTCTGCCAGAGAGGTTTGCAACTGACACTCAGCAGGATATTGGC CTCAGGAATGATACGAATACCCAAAGCTGCAGTTTTCCAACATCTGTTGATGAATATTTAGCTGATCCTGGGGATACTGA TGAAATGTATTCAGTCAACCCAGACGTTGAACAATCTACATATGCAGTTGAATCTGAACCAAGCAACTTAACTCGGACAA AGAAAGTTATATTAAAATGCAATGGGAATGATGATCCTGGTGATAAAGCAGAAGAGCCTTCGCCTTTGTCAGAGGAATCT AATGAGATTCATCAAGAAAGGCCAGTTGAAAACCCTGAAACAGAAGGGGACAAAAGAGTTGTTGAACGGGTTTCTCAAGA GCACACAAAACTTGAGTCCAATTTAGCTGCAGATGTTTCTCATAATTCACTTACCCAGGTAGCAATAAGTTCTTGCAGTC TATATGTATGATGATGTTGACGTGCAGCAGTCAGTGTTTTTAGATGTTATTGATTTGAGACTTTGATGTCTTTCAGTCTT ATAGTTGACTCACAAAAGTTTAAGCTTCAGCATGCAGGAAATGGACCGGATCATAGTGATTGCGCAGCTCAATCAATGTC TGATCCTCTGCAAGATGTTAAAGAATCTAAAGATTGCCATGAGATGGTATCGACCTTACATGTAAGGCAAGAGAATATTT CCCAAGATGGTTCTGAGGTAATCAATCTTCCTTTGGGTGTTTATTTTAGTATTCTGAAGGCAGGTTAGCTTTTGTGTGTA CTTTTCTGTCTTTTCACACTTTTCTCCCTCTTTGAATGAGCATGTTTGTCTATCTCTATTTTTCTATACTTCTAAGTTCT AAGCTGTGTAGATTCTGTTAAGATCAGTAAGGCTTGAATATACTTCTGTTTTTCTGTCATTTGTCTCTGTGATCACCAGT TAAGAGAAGAGAACAGTTATGTTCTTTACTGACACAATCTTTAAAAGCTATGCTTTGATAGTTAGTAAGTTTATGGAGCT TTGCATGCATCATGATTCATGGCAGAATTTTTTTAAAGGAATATACCAGCAGGGTACCTTCCATATCTCTAGTGGATGGG AACGGATATCAGACATCTTAATTAAAAATTCCCCATTTTTCTGCTCATCAAGATTTCTTCAGATGGAGATTTAAAAAATT TGTGGACATTTTTTAATTTCATTTTTCAGTCAATCAAGTTTGTTAAAAGTGGGGTGAGTCCGGGTATTACATCAGACACT CCCGGTAAAGTGTATCTCTTAAGATAAGGAAATAGGGTTGTCATTTACGAATACATCTTTAGAGCCTGTAGAATCTTGTA ACCATGACTAATCAGTAATATCATGCTGGCTAAAAGGTTTTAGTCATGTAATGGTGAGACTATTATTGTGGTCTAGTGGC ATTACCTGCTTGGCATTTGGGATTTGGTTAATGCCTATTCTATGGATTTCCATTGAATAATGAGTTCTAGTCTGATTATC AGGAATTTGCATTTTTTTTGTTCTTTGGTTCAGTTCTGTGAAGATTTTCTTTGTGCAATATATTAATTATTATGGTCAAT GTAGGCTAGTCTGAAGTACCATGGCATTCGTCGGCGCTGCCTAAAATTTGGGGAAGCTGCCTCCAGTGCTCTTGGAAGTA ATATGTCTAACATGAAACTGAATGCAACTTCAAGCCAAATGCATTTTGTCAACCCCTTCAAACCTGTCAGTTCCTTGTAT CTTCAACGAGGCATTCCGGAGACAGGTTCCAAGCCAGCAGGTATTGGGTTACATTTAAATAGCATTATAAATGGAATGCC ACCTAGTTGCGCTTCAACTACGGGTATGAGATCATCAGATGTTTTACAAGGGATGCAATCCACATCTTCAATAAGTTTAA ATAAAGTGGAGAACATGAAGAAATACGTAATATCATCAAATATGGATCGGCAACCATTAGTTGATAATAGAAATGAGATC CATGAAACAGATGCTTCATTAGCTGCAGATTATTTTTCTCCTAGCTTGAAAGAACCTATTGCCTTGTATCCTGCAAGTGG CCATGATAAGAGGAAACTAAGCCCTACAGATGCTGGAAATTCTGAGGGACTCGACCAACATACCCCGGGCAAGAAAAAGT TAGTTCTGATCTTTTTCATATTTTACAATTTTTTTTTTCTTTAGATGTTTTGTAATATCACAAAAGACTGCAATTCTCTA CAGGAAGAAAACATCAAGCACTGCAGATGGTAATGGCTGTAAGCGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTGT GAGTAATTTTTTATATATGTTTTGGCATCTCATTTCATACGTACATGCAGCATTTATGTATTTTGATTTGAGTGTTCTGC AGTTACTGTGACTGTTTTGCTGCTGGAGTCTTTTGTCTCGACCCTTGTTCTTGCCAAGACTGCTTCAATAAACCAGAATA TGGGGAGAAAGTTCTTGAGACAAGGCAACAAATTGAGTCCCGAAATCCACTTGCATTTGCTCCGAAGATTGTGAAAAGCG CCACTAATGCCCCGTCAAATATGGTACAAGACCCTCGTATTATATTGTCTATCTTTTTTGGTTTAAAAAATGAGTTGATT GTTTAATTGTGCCCTCGCAGGAAGATGTAAATCTGACGACACCGTCATCAGCAAGGCACACAAGAGGTTGCAATTGCAAA AGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAGGTTGTGTATTATATACATTTCTATTTGCCCTACACATTTCA CTAGTTTTAATCTCCAGCTTACAGCACATTTTTTCATTAATATTTGAAACAGTCTAATGTTGGATGCTCAAGTGGATGTC GATGTGAGGGATGCAAGAATGTCTATGGCAAGAAAGAAGGTTAGGGTTTATATTATGAATAGCTATTCTACTGTAAACTC TTAATGCACCACGAAATTTAATTTAACTTTTGTCTAGTAAGTATAACTGATATGCAATGATGTTAAGAAGTTTTGATATA ATAATACTACTCTTAAAAGAAGTGTTCAAACCAGCCCAACTGTGTTTCTTATTGATAGATATACTTGGAACTGAATCAAG AATCTCAACCCCAACCCTACCAACCTCTAATTATACGCTCTGTGAAGGAACTATTAAATCTCCACTAACTGGTGAATAGC CATGAATTTATTTGAATGTCAAATTATGGGGGAAGAGAGGATACAAATCTTCAAGATGTGCTGCCAAAAATGTTGGTTAA TGTAGTACACATTTTTTAAATACAGATTATGTTGCACCGGATCATGCTTTGAGTAAAGAAAGGGTGAGCAGTAATGTTGA AAAAGGGTCAGATAGCACCATGCTCAATAAACCGGAAATGGTGGCAAGCAGGGAAGATTTGTTCCAGAAAGAGTTCTATG ATCAACATCATCTGTCACCTATAACGCCATCGTTGCAATGCTCTGAGTAAGATTTCTTTCCATTATGAATCCTTATATAT TTGATTGAATAAGGAATTATAATCCTAGTTTTTTTAGCATGTTTGGATTAGCTTTTTGAAGAATCAATTATGACACCCAG AAGCTACATATTTTTAACATGATGTCCCTGCTTTTGTTCTAATTGACCTTTTTCCATTTGTCCAGCCAAGGCAAGGACAT GTTCCCATCACACAGGAGTCTGATGTTAACTGACTCCTGTGATTCGAAAAGTTATGAGAACGTACAATCACCAGCACCAC CATGTAATTCAGCTTCCTGCATACTTCAGCTCACTCCTCTGTCAAATCCTGATTCAACGTCTGGTGCTCCATCCATCCCA GCTAAACCTGTGGGGACAAGTGCTCCATCATCCCGAGTCTCTCATGGATGTGTTCGCCAATTATCTGGTGGCTCTCTTCG TTGGCGTAGTTCACCAGTTACCCCAAGGAATACCAACTTAGGTGAAGCACAACATTTACAGGGACTTGAATCAGATAGCA GGCTGTTTGATATTGTAGAAGATGAAACACCTGCTATATTGAAGGAAAGTTCAACTCCCACAAAGACTGTCAAAGCAAAT TCCCCGATCCAAAAGCGAGTTTCTCCTCCACGTGTGATTGGATCAAGCTCCTCAGGAGGCTTGAGAACTGGCAGGAAATT CATATTGAAATCTGTGCCGTCTTTCCCACCATTGACCCCTTGCATGGATTCCAAAGGTAATGGCAATGAGGACGGCAATG TGGACTCGGGTAATGGTGCCACCAAGTGACAATCCCAAATCTGAAGAATGTTCAAAATATGCTTTACAGACAGAAGATCC ATGTTAATAGAATTCTTGTCTTGTCTGGTATGGACATGTTGACAGATTTCTGTTTTTGTTTTTATTTCGTTTTAAGTGGT TTTAGAATTTTGCCATTATAGTGACACTTTTGTTGATTTTGGCACACAGGTTCCCAGCTGACTTATTGAAGTTATGACTG CATCGCCCTACAATGTGTAGTTTTTCCTTTATATTTTTAGGAGTTTTCGTTTAGCAGTTCTTTGACTTCTATCTTTGAAC AGATTCTTCCTTTCTTTCTCCCCTTGTTATATAAATTCTTCGCATATTCGTAATGGAGTCTCATCCTTCAAAATGTTAAT TAGGCTACATAAAAGTTTACCTAATTGAGTGCATAATTGATTATGTATATTGCTGTTAGTCGATACTAGCATCTTGTCTA TTGAACTTCTTTCAACCTCGTTTTCTCGCCCGTTTTTTGTTGGCGAGATTCGTATTTTTACTTCGTGAAGGGAATGCTTG TGCTGATTTCTTAGCTAAAGCTGAAGCTAACCAAGATTTAGATTTCCTCCACCTCCAGATCCCCTCCCTGGCATGGAGCA CTTCATCTTCATCTTGGCTGATTCTTTAGGGATGGAAATGGTTAGACAGTAG
CDS sequence (LotjaGi5g1v0061200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGATTCTCCAGAACCTTCCAAGATCAATCGCAGTTCTTCTGCTTCTGCTCTCAATGCCTCCGTCAATACTCCTTC ATCCGAATCCCCTCAAGTTCAAGAGTCCCCATTTTTTAGATTTGCCAGCAATTTATCTCCGATGAGGCCTGCTAAGGCTT GTCATGTGGCACCAAGTTTTCTTGGGCTTAATTCCCCACCTCTGGTGTTCAAGTCGCCACGTGTTAATTGTGACCGTGAA TCGCGGTACTTGGAAAGGCCTCAAGGCACTCATTTATCCAGTGTAGAAATGTCTCAAAGTTACAATGGAGGCAACAGTCT TCGTGTAGCTCCTGGTGATTCCAATGAATCAAATTCTCAACTGCCTCTGCCAGAGAGGTTTGCAACTGACACTCAGCAGG ATATTGGCCTCAGGAATGATACGAATACCCAAAGCTGCAGTTTTCCAACATCTGTTGATGAATATTTAGCTGATCCTGGG GATACTGATGAAATGTATTCAGTCAACCCAGACGTTGAACAATCTACATATGCAGTTGAATCTGAACCAAGCAACTTAAC TCGGACAAAGAAAGTTATATTAAAATGCAATGGGAATGATGATCCTGGTGATAAAGCAGAAGAGCCTTCGCCTTTGTCAG AGGAATCTAATGAGATTCATCAAGAAAGGCCAGTTGAAAACCCTGAAACAGAAGGGGACAAAAGAGTTGTTGAACGGGTT TCTCAAGAGCACACAAAACTTGAGTCCAATTTAGCTGCAGATGTTTCTCATAATTCACTTACCCAGCATGCAGGAAATGG ACCGGATCATAGTGATTGCGCAGCTCAATCAATGTCTGATCCTCTGCAAGATGTTAAAGAATCTAAAGATTGCCATGAGA TGGTATCGACCTTACATGTAAGGCAAGAGAATATTTCCCAAGATGGTTCTGAGGCTAGTCTGAAGTACCATGGCATTCGT CGGCGCTGCCTAAAATTTGGGGAAGCTGCCTCCAGTGCTCTTGGAAGTAATATGTCTAACATGAAACTGAATGCAACTTC AAGCCAAATGCATTTTGTCAACCCCTTCAAACCTGTCAGTTCCTTGTATCTTCAACGAGGCATTCCGGAGACAGGTTCCA AGCCAGCAGGTATTGGGTTACATTTAAATAGCATTATAAATGGAATGCCACCTAGTTGCGCTTCAACTACGGGTATGAGA TCATCAGATGTTTTACAAGGGATGCAATCCACATCTTCAATAAGTTTAAATAAAGTGGAGAACATGAAGAAATACGTAAT ATCATCAAATATGGATCGGCAACCATTAGTTGATAATAGAAATGAGATCCATGAAACAGATGCTTCATTAGCTGCAGATT ATTTTTCTCCTAGCTTGAAAGAACCTATTGCCTTGTATCCTGCAAGTGGCCATGATAAGAGGAAACTAAGCCCTACAGAT GCTGGAAATTCTGAGGGACTCGACCAACATACCCCGGGCAAGAAAAAGAAGAAAACATCAAGCACTGCAGATGGTAATGG CTGTAAGCGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGACTGTTTTGCTGCTGGAGTCTTTTGTCTCG ACCCTTGTTCTTGCCAAGACTGCTTCAATAAACCAGAATATGGGGAGAAAGTTCTTGAGACAAGGCAACAAATTGAGTCC CGAAATCCACTTGCATTTGCTCCGAAGATTGTGAAAAGCGCCACTAATGCCCCGTCAAATATGGAAGATGTAAATCTGAC GACACCGTCATCAGCAAGGCACACAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATC AGTCTAATGTTGGATGCTCAAGTGGATGTCGATGTGAGGGATGCAAGAATGTCTATGGCAAGAAAGAAGATTATGTTGCA CCGGATCATGCTTTGAGTAAAGAAAGGGTGAGCAGTAATGTTGAAAAAGGGTCAGATAGCACCATGCTCAATAAACCGGA AATGGTGGCAAGCAGGGAAGATTTGTTCCAGAAAGAGTTCTATGATCAACATCATCTGTCACCTATAACGCCATCGTTGC AATGCTCTGACCAAGGCAAGGACATGTTCCCATCACACAGGAGTCTGATGTTAACTGACTCCTGTGATTCGAAAAGTTAT GAGAACGTACAATCACCAGCACCACCATGTAATTCAGCTTCCTGCATACTTCAGCTCACTCCTCTGTCAAATCCTGATTC AACGTCTGGTGCTCCATCCATCCCAGCTAAACCTGTGGGGACAAGTGCTCCATCATCCCGAGTCTCTCATGGATGTGTTC GCCAATTATCTGGTGGCTCTCTTCGTTGGCGTAGTTCACCAGTTACCCCAAGGAATACCAACTTAGGTGAAGCACAACAT TTACAGGGACTTGAATCAGATAGCAGGCTGTTTGATATTGTAGAAGATGAAACACCTGCTATATTGAAGGAAAGTTCAAC TCCCACAAAGACTGTCAAAGCAAATTCCCCGATCCAAAAGCGAGTTTCTCCTCCACGTGTGATTGGATCAAGCTCCTCAG GAGGCTTGAGAACTGGCAGGAAATTCATATTGAAATCTGTGCCGTCTTTCCCACCATTGACCCCTTGCATGGATTCCAAA GGTAATGGCAATGAGGACGGCAATGTGGACTCGGGTAATGGTGCCACCAAGTGA
Protein sequence (LotjaGi5g1v0061200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDSPEPSKINRSSSASALNASVNTPSSESPQVQESPFFRFASNLSPMRPAKACHVAPSFLGLNSPPLVFKSPRVNCDRE SRYLERPQGTHLSSVEMSQSYNGGNSLRVAPGDSNESNSQLPLPERFATDTQQDIGLRNDTNTQSCSFPTSVDEYLADPG DTDEMYSVNPDVEQSTYAVESEPSNLTRTKKVILKCNGNDDPGDKAEEPSPLSEESNEIHQERPVENPETEGDKRVVERV SQEHTKLESNLAADVSHNSLTQHAGNGPDHSDCAAQSMSDPLQDVKESKDCHEMVSTLHVRQENISQDGSEASLKYHGIR RRCLKFGEAASSALGSNMSNMKLNATSSQMHFVNPFKPVSSLYLQRGIPETGSKPAGIGLHLNSIINGMPPSCASTTGMR SSDVLQGMQSTSSISLNKVENMKKYVISSNMDRQPLVDNRNEIHETDASLAADYFSPSLKEPIALYPASGHDKRKLSPTD AGNSEGLDQHTPGKKKKKTSSTADGNGCKRCNCKKSKCLKLYCDCFAAGVFCLDPCSCQDCFNKPEYGEKVLETRQQIES RNPLAFAPKIVKSATNAPSNMEDVNLTTPSSARHTRGCNCKRSMCLKKYCECYQSNVGCSSGCRCEGCKNVYGKKEDYVA PDHALSKERVSSNVEKGSDSTMLNKPEMVASREDLFQKEFYDQHHLSPITPSLQCSDQGKDMFPSHRSLMLTDSCDSKSY ENVQSPAPPCNSASCILQLTPLSNPDSTSGAPSIPAKPVGTSAPSSRVSHGCVRQLSGGSLRWRSSPVTPRNTNLGEAQH LQGLESDSRLFDIVEDETPAILKESSTPTKTVKANSPIQKRVSPPRVIGSSSSGGLRTGRKFILKSVPSFPPLTPCMDSK GNGNEDGNVDSGNGATK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 2 | 882 | 881 | 4.6E-219 | – | |
| PANTHER | 2 | 882 | 881 | 4.6E-219 | – | |
| MobiDBLite | 7 | 35 | 29 | - | – | |
| MobiDBLite | 85 | 124 | 40 | - | – | |
| MobiDBLite | 87 | 124 | 38 | - | – | |
| MobiDBLite | 195 | 276 | 82 | - | – | |
| MobiDBLite | 195 | 245 | 51 | - | – | |
| MobiDBLite | 246 | 276 | 31 | - | – | |
| MobiDBLite | 466 | 506 | 41 | - | – | |
| MobiDBLite | 489 | 503 | 15 | - | – | |
| SMART | 506 | 547 | 42 | 4.2E-17 | ||
| ProSiteProfiles | 507 | 633 | 127 | 35.248 | ||
| Pfam | 509 | 544 | 36 | 1.8E-11 | ||
| SMART | 593 | 634 | 42 | 8.1E-17 | ||
| Pfam | 596 | 630 | 35 | 3.0E-11 | ||
| MobiDBLite | 744 | 771 | 28 | - | – | |
| MobiDBLite | 825 | 897 | 73 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0061200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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