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LotjaGi5g1v0061900.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0061900
Transcript ID	LotjaGi5g1v0061900.1
Lotus japonicus genome version	Gifu v1.2
Description	F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp\|Q949S5\|P2B11_ARATH F-box protein PP2-B11; TrEMBL-Plants: tr\|G8A220\|G8A220_MEDTR Phloem protein 2-B11; Found in the gene: LotjaGi5g1v0061900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:10326288..10327785) extracted from Lotus japonicus Gifu genome v1.2.

CAACAATTACTCCGAAGTAGGTTAAGAGAGAGAAAGAAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGATATGGAATTGCCGGAAGGATGCATCGCTGATATACTGTGTCGCACTACTCCGTTGGATGTCGCCAGGATC TCAGTCATTTCTAAGATCTTCTCCTCTGCCGCTGATTCTAATACCATTTGGGAACATTTTCTCCCTTCTGATTATCGTTC CATCATTTCCATGTCTCCTTCCTTGGCCAATGCTCCTTCAAAAAAAGCCATATATCTCGCTCTCTCTGATCACCCTATCA TCATTGACCAGGGTAAAAAGGTAAATAATCTCATCAATCTAATATGATCATTTCTTAGATTAGGGCTTTTCTGAGTATTA ATTAAGCTTTGGTTGTTTTCTAATTTTCTGAAATGCAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATG CTTGCTGCCAGATCTCTCTACATTTCTAGCGGTGACGATGAACATTACTGCCACTGGGTCACCCTCCCTGAGTCTAGGTC AGCTCTTCAATATTGAATTTTCTTCTAGTTTTTTGTGGAGTTCATTTTATTTTATTTTATTTTATTAATTAATGATAAGA CTTATCAAACAAAAATCACGATGTTAATTAATCTCACCTTTAATGCATCAATAATATATTTATAAGAATTAAGTAAAAGA TCGGTGAATTTTATTTCCAATTCATTTATTTTAAACATAAAGCCTACTTATGATAAGATTATTTAAATTTTTGAGTAAGG TATATTGTCATTTAATTACGAGTTATGTTGTGAATGTTTATATTTTTGTACCACATCATTCTTATGTACAAATGTTGCCA ACCTATATATTGAACAGGTTTGGAGAAGTTGCCATGCTTAAAGTTGCGTCCAGGTCTGTTATTTGTGGGAAGATAAATAC TGTTGATTTGTCCCCAAACACTCAATATGCATCTTTTCTTGTTTTTAAGTTGATCAATGCTCATGGATTTCATTGCAAAC CTATGTTGTTATGGATTAACATTTCTGGAGGCCCTATCTGTTCTAAGGCGGTTTGTTTGGACTTGAGGTCAAAAGGTAGG GACAATATATTCAAATTTCGAAATGTGAGAAGTGATGGCTTGTTGGAGATTGAGATAGGGGAGTTCTTCAATTCAGGCCT AGAAGATGGTGAAGTAGAGATGCGTGTTATGATGATAAAGGGGAATGGTAGTTTCTATCTTGAAGGAATAGAAGTTAGGC CTAAAATTCTCATCACATGAAAAATGGTAGATAGGCCTAGAAAATATGTTAAGGGTATTGCAACTTTTGTGGTAGAAAAT ATGGTCTCCAAATGAATTTCTTTTTCATTTCTTAGTTTTTGACCAAATAAACTTATTATGTGTCTGTTTGTTCTTTATTC CCTTAGCTTGTGTAATCATTCAATCCCAATTTGAAAACACTTCAAAAATGCATATGCA

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0061900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAATTGCCGGAAGGATGCATCGCTGATATACTGTGTCGCACTACTCCGTTGGATGTCGCCAGGATCTCAGTCATTTC TAAGATCTTCTCCTCTGCCGCTGATTCTAATACCATTTGGGAACATTTTCTCCCTTCTGATTATCGTTCCATCATTTCCA TGTCTCCTTCCTTGGCCAATGCTCCTTCAAAAAAAGCCATATATCTCGCTCTCTCTGATCACCCTATCATCATTGACCAG GGTAAAAAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATGCTTGCTGCCAGATCTCTCTACATTTCTAG CGGTGACGATGAACATTACTGCCACTGGGTCACCCTCCCTGAGTCTAGGTTTGGAGAAGTTGCCATGCTTAAAGTTGCGT CCAGGTCTGTTATTTGTGGGAAGATAAATACTGTTGATTTGTCCCCAAACACTCAATATGCATCTTTTCTTGTTTTTAAG TTGATCAATGCTCATGGATTTCATTGCAAACCTATGTTGTTATGGATTAACATTTCTGGAGGCCCTATCTGTTCTAAGGC GGTTTGTTTGGACTTGAGGTCAAAAGGTAGGGACAATATATTCAAATTTCGAAATGTGAGAAGTGATGGCTTGTTGGAGA TTGAGATAGGGGAGTTCTTCAATTCAGGCCTAGAAGATGGTGAAGTAGAGATGCGTGTTATGATGATAAAGGGGAATGGT AGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAAATTCTCATCACATGA

Download CDS Sequence

Protein sequence (LotjaGi5g1v0061900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELPEGCIADILCRTTPLDVARISVISKIFSSAADSNTIWEHFLPSDYRSIISMSPSLANAPSKKAIYLALSDHPIIIDQ GKKSFQLDRKSGKKCYMLAARSLYISSGDDEHYCHWVTLPESRFGEVAMLKVASRSVICGKINTVDLSPNTQYASFLVFK LINAHGFHCKPMLLWINISGGPICSKAVCLDLRSKGRDNIFKFRNVRSDGLLEIEIGEFFNSGLEDGEVEMRVMMIKGNG SFYLEGIEVRPKILIT

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
ProSiteProfiles	PS50181 View details on PS50181 Search for proteins/transripts with this domain View external data on PS50181	1	43	43	9.153	IPR001810 Show description in modal box View details on IPR001810 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR32278:SF44 View details on PTHR32278:SF44 Search for proteins/transripts with this domain View external data on PTHR32278:SF44	2	251	250	3.0E-98	–
PANTHER	PTHR32278 View details on PTHR32278 Search for proteins/transripts with this domain View external data on PTHR32278	2	251	250	3.0E-98	–
SUPERFAMILY	SSF81383 View details on SSF81383 Search for proteins/transripts with this domain View external data on SSF81383	3	98	96	5.56E-9	IPR036047 Show description in modal box View details on IPR036047 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF14299 View details on PF14299 Search for proteins/transripts with this domain View external data on PF14299	93	251	159	2.4E-32	IPR025886 Show description in modal box View details on IPR025886 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005515 View details of GO:0005515 AmiGO InterPro QuickGO	Molecular function	Protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).	Subterm of View details of GO:0005488

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0061900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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