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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0062000 |
Transcript ID | LotjaGi5g1v0062000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein PP2; TAIR: AT1G80110.1 phloem protein 2-B11; Swiss-Prot: sp|Q949S5|P2B11_ARATH F-box protein PP2-B11; TrEMBL-Plants: tr|G8A220|G8A220_MEDTR Phloem protein 2-B11; Found in the gene: LotjaGi5g1v0062000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10352628..10354030) extracted from Lotus japonicus Gifu genome v1.2.
AACAATTACTTCAAAGAAGGTTAAGAGAGAAAAGAGTAAGATATGGAATTGCCGGAAGGATGCATCGCTGATATTCTGTG CCACACTACTCCGTTGGATGTTGCCAGGATCTCAGTCATTTCTAAGATCTTCTGCTCTGCCGCTGATTCTGATACCATTT GGGATCATTTTCTCCCTTCTGATTATCGTTCCATCATTTCCATGTCTCCTTCCTTGACCAACGCTCCTTCAAAAAAAGCT CTCTATCTCGCTCTCTCTGATCACCCTATCATCATTGACCAGGGTAAAAAGGTAAATAATCTCATCAATCTAGTATGATC ATTTCTTAGATTAGGGCTTTTATGAGTATTAATTAAGCTTTGGTTGTTTTCTAATTTTCTGAAATGCAGAGCTTTCAATT GGACAGGAAGAGTGGGAAGAAATGTTACATGCTTGCTGCCAGAGCTCTCTACATTTCTAGCGGTGACGATGAACGTTACT GCCACTGGGTCACCCTCCCTGAGTCTAGGTCAGCTCTTCAGTATTGAATTTTCTTCTAGTTTTTTGTGGAGTTCATTTTA TTTTATTTTATTTTATTAATTAATGATAAGACTTATCAAACAAAAGTCACAATGTTAATTAATCTCACCTTTAATGCATC AATAATATATTTATAAGAATTAAGTAAAAGATCGGTGAATTTTATTTCCAATTCATTTATTTTAAACATAAAGCCTACTT ATGATAAGATTATTTAAATTTTTGAGTAAGGTATATTGTCATTTAATTACGAGTTATGTTGTGAATGTTTATATTTTTGT ACCACATCATTCTTATGTACAAATGTTGTCAACCTATATATTGAACAGATTTGAAGAAGTTGCCAAGCTTAAAGTTGCGT CCAGGTCTGTTATTTGTGGGAAGATAAATACTGTTGATTTGTCCTCAAACACTCAATATGCATCTTTTCTTGTTTTTAAG TTGATCAATGCTCATGGATTTCACTGCAAACCTATGTTTTTATTGATTAACATTTCTGGAGGCCATATATGTTATAAGGC GGTTTGTTTGGACTTGAGGTCAAAAGCTATGGATAGTACATTCATATTTCGAAATGTCAGAAGTGATGGCTTGTTGGAGA TTGAGATAGGGGAGTTCTTCAATTCAGGTCAAGAAGATGGTGAAGTAGAGATGTGTGTTATGATGATAGAGGGGAATGGC AGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAAATTCTCATCCCATGAAAAATAGTAGATAGCCCTAGAAAATATGT TAAGGGTATTGCAACTTTTGTGGTAGAAAATATGGTCTCCAAATAAATTTCTTTTTCATTTCTTAGTTTTTGACCAAATA AACTTATTATGTGTCTGTTTGTTCTTTATTCCCTTTGCTTGTG
CDS sequence (LotjaGi5g1v0062000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATTGCCGGAAGGATGCATCGCTGATATTCTGTGCCACACTACTCCGTTGGATGTTGCCAGGATCTCAGTCATTTC TAAGATCTTCTGCTCTGCCGCTGATTCTGATACCATTTGGGATCATTTTCTCCCTTCTGATTATCGTTCCATCATTTCCA TGTCTCCTTCCTTGACCAACGCTCCTTCAAAAAAAGCTCTCTATCTCGCTCTCTCTGATCACCCTATCATCATTGACCAG GGTAAAAAGAGCTTTCAATTGGACAGGAAGAGTGGGAAGAAATGTTACATGCTTGCTGCCAGAGCTCTCTACATTTCTAG CGGTGACGATGAACGTTACTGCCACTGGGTCACCCTCCCTGAGTCTAGATTTGAAGAAGTTGCCAAGCTTAAAGTTGCGT CCAGGTCTGTTATTTGTGGGAAGATAAATACTGTTGATTTGTCCTCAAACACTCAATATGCATCTTTTCTTGTTTTTAAG TTGATCAATGCTCATGGATTTCACTGCAAACCTATGTTTTTATTGATTAACATTTCTGGAGGCCATATATGTTATAAGGC GGTTTGTTTGGACTTGAGGTCAAAAGCTATGGATAGTACATTCATATTTCGAAATGTCAGAAGTGATGGCTTGTTGGAGA TTGAGATAGGGGAGTTCTTCAATTCAGGTCAAGAAGATGGTGAAGTAGAGATGTGTGTTATGATGATAGAGGGGAATGGC AGTTTCTATCTTGAAGGAATAGAAGTTAGGCCTAAAATTCTCATCCCATGA
Protein sequence (LotjaGi5g1v0062000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPEGCIADILCHTTPLDVARISVISKIFCSAADSDTIWDHFLPSDYRSIISMSPSLTNAPSKKALYLALSDHPIIIDQ GKKSFQLDRKSGKKCYMLAARALYISSGDDERYCHWVTLPESRFEEVAKLKVASRSVICGKINTVDLSSNTQYASFLVFK LINAHGFHCKPMFLLINISGGHICYKAVCLDLRSKAMDSTFIFRNVRSDGLLEIEIGEFFNSGQEDGEVEMCVMMIEGNG SFYLEGIEVRPKILIP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 43 | 43 | 8.994 | ||
PANTHER | 2 | 251 | 250 | 6.6E-97 | – | |
PANTHER | 2 | 251 | 250 | 6.6E-97 | – | |
SUPERFAMILY | 3 | 98 | 96 | 2.62E-8 | ||
Pfam | 93 | 251 | 159 | 4.5E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0062000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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