Transcript — View — Lotus Base

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LotjaGi5g1v0063500.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0063500
Transcript ID	LotjaGi5g1v0063500.1
Lotus japonicus genome version	Gifu v1.2
Description	DUF581 family protein; TAIR: AT2G25690.1 DUF581 family protein, putative (DUF581); Swiss-Prot: sp\|Q8LGS1\|MARD1_ARATH Protein MARD1; TrEMBL-Plants: tr\|K7M6H9\|K7M6H9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0063500
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:10677363..10680656) extracted from Lotus japonicus Gifu genome v1.2.

TGGGTCCCTTTCACTTTAGTGGCTACGTGGATAGAAGACAGGGAAACATTTGTCACAATCAAAGTGAAAGTAAGTAATTT ACACAACACGACAAACAAAGTAGTAACGCGCGGAGAGAGAAAGAGAAAGATAGTACAGATACACGGTACTGCCTGCACAA GTTTCAGTTTCTCACACACACACATACACCATTCAGAGAGAGAAAGAAAAAGAAAAAGAGTTTTGGAGTTTCTTCTCTCT CTGAAACTCAACTGAACTTTCTAGAGAGTAAGAAATCTCAGGTCAGTTCTTCTCTTCAATCTTCATCATCTATTATTTTT TCTTCTTCTCTATTTGATTTGATTAGCTTTTTGTTCATTCCAGAATCCAGATTCTGTTACTGGTAGTTACTTTCTTCATT TTTTGATTAGCCTTGTACTTCATTTTCTTCTTCCTTTTCCTTTTTCTAGGTTTTTTTTTTTTTTTCATTCTTGATTATTC AACTGTATTTGACATTTTGCATTTGGGTTTCATGCATTGAAATAAATGCTGCTTAGTGCTTCTCATTTTACCAGTGATTG TAATTTTGGCCTGATTTGTTGTTCTGTTTTATTTTTTAAATGTTCCATGTTTGATTCTTTATTCTCTATGAAGACATGGA TATGTAGATTTTAATTGAGGCTGGAATGAAGTTGTTGATTTTTTCATTCAACAGGTGTTTGTTTGTTTTGAGATGATGCT GAGGAAGAGGACAGGGTCAATCCAGGAAGATCAACAACAACAACACCACATGGGTCAAATGGAAGTCTCTGATACAAATT GTGACTACCATCATGCCTTGGAGAGTAATGTCAAAAGCAGCAACTCACTTTTCAAAGCCCCAATTTTATTTGTGGGTTTG GGACCAAAGGGCTTGTTGGATTCTGATTCAGTTAGGAGCCCCACTTCCCCACTAGATGTAACATTGCTTTCAAATCTAGG AAACCTCTTAAGAACCCCAAGATCATCATCCATTGAGGGGCAGCAGCAACATAGGAGCTGGGACTGTGCCAAAGTTGGTT TAGGTATCATAGATTCTCTGGAGGATTGTTCTAATGTTTCTGGGAAAATTAATATTCTCCTATCATCTGAGACCAAGAAG ACTAGTCTCAGTCCCCAAATGATTACCAAACCCCCAACTTGTAAGTCCTGTGTGGATCCTGTTCAGGCCTCTAAGTCTTT ACCTAAAGATTTTTATAAGCTTCCCTATACCCATAATAGTTCTTCTGCTAACCACAAGGGTGAATCCACTGTTCTTTTTG AGATTGGAGAGACCCCACTAGAATATGAGTCCCTTGGGAAAAATTGTTCTTGTTCATTGGACTCCTCCAGTTCAATGAAA AATCTTTCTGGTTTAACTGGTTCTAACTTTGATTCAGATTCTGAGATTTTATCCTCTCCTCCTCATTTTATTGGAGGAAG CCACAACCCAAACACCTTGCCACCTGCAGAGTTAAATTCAAATTCAAACCCTGTGCCAGCATCATCCTCCTCTAATGAAT TTATCAAGTCCCTATCAGCTAGTGAGATTGAAAACTCTGAGGACTACACATGTGTGATTTCCCATGGTCCCAATCCCAAA ACAACCCATATTTTCTGTGACTCTATCTTGGAAGTTCATGCTAATGATCTTAAAAAGTATTGTAAGAGTGAAGAAGAGGA AGAGGAGGAGGCGAAACTGTCCTCTCCCATGGTTAACAAGTTACAGACTCCAAACCAATTTCCCTCTGGTGACTTTTTGT GTGTCTGTTACTATTGCAACAATGAACTGGTAGAGGGGGAAGATATTTACATTTATAGGTAGATTAGCACTGATGCATCT CTTTTCTGTTTTAGGATCAGATTTTCTTTTATCAGAATCAATTCTAAAACTTAGAAGCAACTCACAGAAGCTTCTTCCCA TAATTGATTCTGATATGGATAGAATTGATTGCCAGAGTTTCTAATCATGTATGTTTGGATACACGTGGAAAACCACAGCG AAGTAAAAATCTCGGTGGAGAGCCACAAAAGCTAAGGGAAGTTGCTTCTGTCCACCATGTGATTTTGGCTCATCATGGTT TTTCATCGTGTATCCAAACACCACTTAACAATTTCTTTTATGGATTGAATTCATTCTAAGATTGGGTTCTTTTGATATCC TGCAGAGGTGAAAAATCATTTTGCAGTCCAGCTTGCCGTGCCATGGAGATCATGATTGATGAGGAGCTAGAAGAACCCGA TTCATCATCTGAGAAATCTCTAGAGGGGGAATCTGGTGGTGAACTTTTTGAAACAGGCTTCATCAAAGCTATATAGAGGG CTTTTCAGCCATTGGCACTGAGGCCATGAAATGAGTAAACGCACCTGATCATCTGTTCACAAAGGGCTGTTTTTTGTGTG CATTATTAGCAGCCATGGATGGTTGTTTTGTACATCATTGCGTTTGCTGTTGGTTTTTGTGCTTTTCATGGTCTTGGTGG ATGTGGTTCTCTTCAGCTAGATAATTGGTTTCCATAATTAAGTTGATAGATATGTTAAGACACTATATGATAGGTTAAGC TTTTTTGTTTTTTCTCATTAAGGTTTAAGCCTTTTTTTTCATGGCTTATCCCTTATTGTCGGTGCTTTGCCTTTATCTCT ATTATGTCAGTATATGCAACCCACTCAGACAAGTGTCTGACTTGGAAGGTTGTGCTGCTTGTAATGAATATGGAACTATA TGCTTTCCGATGAATTTTGGATTGTGAATTGGAAAACTAATTGATTTGATCCTTTAATCATTCATGGGGTGGGATTGTTC TTAATTTTTTTTACTGGATCATTTTTTTAACTTGGATTTGACTAGGTTCAAGAAACTTGATGATTTGTGTTTAAATCATC GAGTTTATTTACAGTTGATGGCTTAATTTGAAGTATAACTTCTAAAGCTCTGGGCCCAAATGGATTTTAACCTTTCTTCT TTAAGCAATACTTGGAATTTAATTTGGAAATGGTAGGGAATGATGTTTGGAAGCTGGTGTAGGATGCTTACAGGGGTGGC TTTTATAATCCAATATGGCAGAGACTTTGTTGGTATGGATTCCCAAAGTTCATCATCCTTCCCAGTTTGAAGAATTTAGA CTGATGATTAGTCTATGCAACACCTTATACAATTGATAACAAAGGTCCTTGAGTAAATTTGGTTTCTCTTCTAACATTGT TTCACTGATGAACTTAGAACACTTGAGTTAAAAACAATGAATATTTTGTATTTGAGATCTCTTTAAGTAAGCTTTCTAAC CATAAATTCCATAG

Download Genomic Sequence

CDS sequence (LotjaGi5g1v0063500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCTGAGGAAGAGGACAGGGTCAATCCAGGAAGATCAACAACAACAACACCACATGGGTCAAATGGAAGTCTCTGA TACAAATTGTGACTACCATCATGCCTTGGAGAGTAATGTCAAAAGCAGCAACTCACTTTTCAAAGCCCCAATTTTATTTG TGGGTTTGGGACCAAAGGGCTTGTTGGATTCTGATTCAGTTAGGAGCCCCACTTCCCCACTAGATGTAACATTGCTTTCA AATCTAGGAAACCTCTTAAGAACCCCAAGATCATCATCCATTGAGGGGCAGCAGCAACATAGGAGCTGGGACTGTGCCAA AGTTGGTTTAGGTATCATAGATTCTCTGGAGGATTGTTCTAATGTTTCTGGGAAAATTAATATTCTCCTATCATCTGAGA CCAAGAAGACTAGTCTCAGTCCCCAAATGATTACCAAACCCCCAACTTGTAAGTCCTGTGTGGATCCTGTTCAGGCCTCT AAGTCTTTACCTAAAGATTTTTATAAGCTTCCCTATACCCATAATAGTTCTTCTGCTAACCACAAGGGTGAATCCACTGT TCTTTTTGAGATTGGAGAGACCCCACTAGAATATGAGTCCCTTGGGAAAAATTGTTCTTGTTCATTGGACTCCTCCAGTT CAATGAAAAATCTTTCTGGTTTAACTGGTTCTAACTTTGATTCAGATTCTGAGATTTTATCCTCTCCTCCTCATTTTATT GGAGGAAGCCACAACCCAAACACCTTGCCACCTGCAGAGTTAAATTCAAATTCAAACCCTGTGCCAGCATCATCCTCCTC TAATGAATTTATCAAGTCCCTATCAGCTAGTGAGATTGAAAACTCTGAGGACTACACATGTGTGATTTCCCATGGTCCCA ATCCCAAAACAACCCATATTTTCTGTGACTCTATCTTGGAAGTTCATGCTAATGATCTTAAAAAGTATTGTAAGAGTGAA GAAGAGGAAGAGGAGGAGGCGAAACTGTCCTCTCCCATGGTTAACAAGTTACAGACTCCAAACCAATTTCCCTCTGGTGA CTTTTTGTGTGTCTGTTACTATTGCAACAATGAACTGGTAGAGGGGGAAGATATTTACATTTATAGAGGTGAAAAATCAT TTTGCAGTCCAGCTTGCCGTGCCATGGAGATCATGATTGATGAGGAGCTAGAAGAACCCGATTCATCATCTGAGAAATCT CTAGAGGGGGAATCTGGTGGTGAACTTTTTGAAACAGGCTTCATCAAAGCTATATAG

Download CDS Sequence

Protein sequence (LotjaGi5g1v0063500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMLRKRTGSIQEDQQQQHHMGQMEVSDTNCDYHHALESNVKSSNSLFKAPILFVGLGPKGLLDSDSVRSPTSPLDVTLLS NLGNLLRTPRSSSIEGQQQHRSWDCAKVGLGIIDSLEDCSNVSGKINILLSSETKKTSLSPQMITKPPTCKSCVDPVQAS KSLPKDFYKLPYTHNSSSANHKGESTVLFEIGETPLEYESLGKNCSCSLDSSSSMKNLSGLTGSNFDSDSEILSSPPHFI GGSHNPNTLPPAELNSNSNPVPASSSSNEFIKSLSASEIENSEDYTCVISHGPNPKTTHIFCDSILEVHANDLKKYCKSE EEEEEEAKLSSPMVNKLQTPNQFPSGDFLCVCYYCNNELVEGEDIYIYRGEKSFCSPACRAMEIMIDEELEEPDSSSEKS LEGESGGELFETGFIKAI

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	-	–
PANTHER	PTHR46868:SF7 View details on PTHR46868:SF7 Search for proteins/transripts with this domain View external data on PTHR46868:SF7	2	416	415	5.5E-144	–
PANTHER	PTHR46868 View details on PTHR46868 Search for proteins/transripts with this domain View external data on PTHR46868	2	416	415	5.5E-144	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	8	23	16	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	232	267	36	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	248	267	20	-	–
Pfam	PF04570 View details on PF04570 Search for proteins/transripts with this domain View external data on PF04570	342	389	48	1.1E-17	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51795 View details on PS51795 Search for proteins/transripts with this domain View external data on PS51795	347	391	45	18.276	IPR007650 Show description in modal box View details on IPR007650 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0063500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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