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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0064300 |
| Transcript ID | LotjaGi5g1v0064300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein lunapark; TAIR: AT2G24330.1 integral membrane metal-binding family protein (DUF2296); Swiss-Prot: sp|Q9ZQ34|Y2433_ARATH Uncharacterized protein At2g24330; TrEMBL-Plants: tr|I3SPF3|I3SPF3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0064300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10754352..10759244) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTAATTGCACTCCTTAATATATGTGCTTCTTCCCTTCCACCAACTCCACCTCTCAACCATAATTACACCTTACTAG TTACTTCAACTCCACCGCGCCGCTTCGTATTTGTCAACCCCTCACCTCCTTCCATACGCGCGCGCGTGACTGCGCCACCA CCATTCTCGAACCATCTCAGATCGAACCTCGTTCCGCGAGCCACTTCTTCTTCTTCATGTGCGGTTACTACTGATTATTC TGCACGCTGCGTTGATTGATGGGTGAAGAGAAGGAAACTAGTGCTGCTGCTGCTACTAATACTGATACTACGAAGAAGAA GCAGAGGAAGGGTTTGATTTCACGAATTTGGAACGTGATTTTTAGGTCCAATGGAAATGATTTGGAGAAGAGGCTACAGC ATTTATCCAAAGCAGAAGCTTCTGTTATGAATAAAATCGCCAACAGGTCCCGCTTCCGTAGCCGAATCTTGCGCAACCTT ATTCTGTTTTCTGTTCTATTTCAGGTACATTCGCATTTTCAATATTTTTTATGCGGTTTATCATTTGACATATTAGATTA ATAACAATTGAAATTTTGTGGAATTGAAATGAGGGGTTTTCATAATTTGGGTGTAGTGTTCGAATCCCATGCGTCGAGTA AAATTTCAGTTGGTGGGCAACTAATTTCAGGGAGATCCCCCGGCGCTCCTACCGAGGAGTGGGGCTCTGCCACTAATGCT TGTTAGAACCGCAACGAAATGTAAGAACGGACTTGGATCCTATATAATAATAACAAACCCACTCTTGAATTCCTACAAAT AACATTGTATTTCAAAAAGCTTGATTTTAATTGGTGGATTGATGTAATTGTGAGTTTCGTTTAATAGCTATTTGTAATGT TCGGGGCTCTGCTGACCTCCTCCCCAGCATGCCATTGCGCTCTGATGGGTAGTCTGGAGGTGCTTTCTCTCTGTTCTACC ATTTTTGCTACCAAAAAAAAAAAGAAATGAGGGTTTTCTTAAAATTTTGGATTTGTCCATGAACCAATGAATGTTGTCAT ACTACTGAGGCTTTTTCTTTTGGTCTTGTGAAAAGTAAAATAACAAGGATTTTGCTTAAAATGATTTCAATTCCAGGTCA TTGCTGTAGTTTATGCTACTATGACAACAAGATCCGTGGGTATGAATTGGAAAATGAGGGCAATCCGAGTTTTGCCAATG TTTCTTTTGCCTGCCTTATCATCTGCTGCGTATTCCTTCTTTGTCAGCTTCATACGGATGTGTAAGTGTATATAAAGATT TACAATTAAGTAATTAACATACTTAAATATTGGTCAATAGAAGCTTAAATTTTGTATTCACATTAGTTTTAAAAAAATTG TGGTTTGAAATAGTGAGTCACATTCTATGTATGATGCCAAAGCATTTGATTAAAGAAATTTTTTACTATCATTCATACAT TATAAAAGCTATGATTCAAAATTCAGTATCTGTAACCTGGGGTTCCAATTCAAGACTGCAGTTTTTTTTACTGCGAGCTT CTGTTTAGAGTTTGATATGCCAAATGAAGATAATGTTAGTTGAAATTTGAAACATGGCAATGTGATTTTATAGGTGATCG CAGGGACCAAAAAACTCTTGAAACACTGAGAGCTGAAAGGCAGGCAAAAATTGACGAGCTCAAAGAGAAGACAAATTATT ACATTACTCAACAACTCATTCAGGTGATTAATGATTGTTTAAAGCACATATCTTTCCTTGTCGATTGGAGCACAAAAAAG ATATTTGTAGTTGTATTGATCTGTTCATGTTCCTTACTATCCAAATCATAAGGCTACTTTTGGTACATTTTATAAACTAG ATCTTATAGTAATGCTATTTTCGATATATGTTTGCATCTCATAGTATAGTTATATCCAGTCAAGCATGCCCTTACAACCA CTTCCTCACCTCTTGATATCATCCAAATAAAGGGAACCAATTAAGCCTCACCTTCCACTTATGTGAGGCCTGCTGCTGGC ATCAACCTACCAACTCCGCCACCACCACACCATAAGTACTGGAGTCAACATACACCAGATAAGAGCATTCCAGAAATTAA GGCTTATAAGCATTCTTAATCTAGTGCTCTTTTATTGGGGTGTATGACCTCCATTCGCTCTTTCTACTGAGACATTTGAA TACAGAATTGCTAATATGCTTCTACAAGCTGGAGTATGTTAGTCAATAACAACTTTATATTTGTTAAACAAGTGAAAAAC AAGTGACATGGCTACTAATATACTCTTATTTTTTATGAGGATATCCTCTAGTTTCAACTTTGAAATTTGTTATTTTTACT TCAAAGTTGTAGCTTGCCAACATTCTTCATCTAAAAAACAAGTGGGTGTATAAGGGAATGTATCTGGTGAGACCTTGTGA GGCCATCCTCTGACCTAATGGCTAATACACTTCCCATGCATATACACTCCTCATTGTTTTTTGAATGGAGTACGTTATCA AGTTAGAACCTTAAATATGTATTTTCAAAGTGCATATAACTAACTTACTCAAAAACACAAGTTTGAGTTTATTAGTAAGC CCCATAAGGAATTCTAAACAACTTAACATACTCTCACTTGTTTATTATTTTACTAGCATTATTTGTTTGACTCGTATAAA AGTTATTTTGGAGGTGAAACTTTAACTTGGGAGATCTAATGATAAAAGATAAAAGAATGTATACATTTTGATGGAAAAAA GCTGATGAGCTAAAGAAGGGTAAATTACATATTACACATTCACTTTAGCCCCCCCCCTTAAATTTTTTATTTCAGCTCTG TCTCTGCATGTGAGCATGTCTGTGTATTATTGTTGCGGTTTAGAACTTTTGCCTTAGGGTAGAATATGAAGGAAATCACA TATGATCAATTCTACATATATAAGCCTAGTTCTTTGTACTGTGAGCTGAGTAGAGTGTGCTCTGAAGTGCTGCAGTACTG GAAGGACTCGTAATGATATTGATTTGGAAGTACTTTAATAGTATTTTGTGTTTTATACTTTTGATCTATGCAGAGATATG ACACAGACCCAGCAGCAAAGGCAGCTGCTGCTACTGTTTTGGCATCTAAGTTGGGTGCGGATTCGGGCTTGAAAGTGCAT GTGAGAGATGAATCTATGTCTAGCGCTCCAACAGGGACGACCAACGATGCTGAGCATGTGCAGTCTAGTGGACTTCGAAG TCGCAAACAAGTGCACTCTAGATCCACTAGTCCAGGGACAACTGCCCCAAATTATTCTGATCAGCAATTAGTTGGCTCTG GGGGAGTTAACCTAAGTCATACAGTGCAAAATGAGCTTGTAGTTGTTGGACATCATAAACCTCAAAGTTCAACGCATAAT GGAGGATGGATTGCTAGAATTGCAGCATTGCTTGTAGGTGAGGATCCAACACATTCTTATGCACTCATATGTGGGAACTG CCATATGCATAATGGTAAGTGGATCGGATTTGCTTGTACTATCAAAGATTAACTCCTTTAACTTCTCATGTTCACACTTA TATGCTCCCCATATGTGAGTTTTGAAATGATAAGGCTATGGTTATGAGATAAATTTTGACCGTACAACCATACATGAATG ATGAAGATTGGAAAAGTATTTTAATGGTGACATGACCAGGTAAAAAAATCATATTTGAACTTCATCTTTCATGAAAAGAT CTAATCGTTAATGTTTGCTCTTCTCACTCATAAAAATAGCCCTCTCACTTGGTGTTGGCGTGTCCTGTGTTGTCTTCGCC AACTTACCTTTATGAATAGAGTGGCAGGAAATTTGTGTTTATTATCTGCTTATTTCTCTTCAGGTCTTGCTCGGAAAGAG GAATTCCCGTTTATCACTTACTACTGCCCACACTGCCATGCCCTGAACAAACCAAAGCAGTCGGGTGAGCAAATCTCCGG TTTTAATTCCCCAAAAGCAGATAATGGTGAGGCAGATAGGAATCCTAGTGCTTGTGCAGCTGACAAATTAATGAGAAGCA ATAATCCGGTAAATACCAGCCCTGAGACCGAGAAGAATCTGTAGGGGCTAGGTAAGCAAGCTAGTTAAAAGCAAGTTTCT TTTGGGGAATGGCCGTTGGACATGTCAATCCCCATGTTTGAGGACACTGACCAAACTATAAGGAAAGCCACTGTGTTTGT TTTAACATTTGACCTCCATCTAAGACCGAAGGGGGTCTTCACTCTGTTTTTAAAGACACGTTCTTGGTTAGTTTTGTAAC AGGGAGTGTTGATATATCACTTTGAAACTCCTTGTCATTTATAAATTATAACACAGATTACATGTCTTGTCTTGCTTGTG AGCTACTGCAAATTTAACATCTTGATTTTTCTATTCTAGTCTGAGAGGGTTGAGGGGGAAAATCAGAGAGTGAAGAGGGG AGTGTGGGGGTTAGAAAAGATAAAGGTAGTGGCGTAAAAAATTCATGAGGTGACGGGGCTTATGGTTAAGAGAGATAGAT TGGCGACGCTTAATGAGTTGTGGAAGAAGTATTGGGTGGAGGAGAGTATGTGGCTACAAAAGGCGAGCGTGCGGTGGATT AGGATGGGGGATCGAAATACCATCTTCTTTTAGAAAGTGTGTAAGGTGGGGGATGCACGGAAAAATCTGGAGAGATGGTT GATGATCTTGGGGAGATTAAGAAGGCGGTTTTTAATTATACAAAGGGCGCTTCGTCCTTTCGACAACAAGATTAATTTCC GTCGTCGGACGGAAAAATTGTGAAAATGACAAATTAAATTCAGTCAATTAAACATGGTTATTAAACTCTAGTTTTAACTC TTACTAGTTTACGATCCTAGGTAGCCAAAACAAGTTATATCGCAGGTAAACTCTCTTTTTTATAAACTCGGGTGAACTCA GGTAAACTCGATA
CDS sequence (LotjaGi5g1v0064300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAAGAGAAGGAAACTAGTGCTGCTGCTGCTACTAATACTGATACTACGAAGAAGAAGCAGAGGAAGGGTTTGAT TTCACGAATTTGGAACGTGATTTTTAGGTCCAATGGAAATGATTTGGAGAAGAGGCTACAGCATTTATCCAAAGCAGAAG CTTCTGTTATGAATAAAATCGCCAACAGGTCCCGCTTCCGTAGCCGAATCTTGCGCAACCTTATTCTGTTTTCTGTTCTA TTTCAGGTCATTGCTGTAGTTTATGCTACTATGACAACAAGATCCGTGGGTATGAATTGGAAAATGAGGGCAATCCGAGT TTTGCCAATGTTTCTTTTGCCTGCCTTATCATCTGCTGCGTATTCCTTCTTTGTCAGCTTCATACGGATGTGTGATCGCA GGGACCAAAAAACTCTTGAAACACTGAGAGCTGAAAGGCAGGCAAAAATTGACGAGCTCAAAGAGAAGACAAATTATTAC ATTACTCAACAACTCATTCAGAGATATGACACAGACCCAGCAGCAAAGGCAGCTGCTGCTACTGTTTTGGCATCTAAGTT GGGTGCGGATTCGGGCTTGAAAGTGCATGTGAGAGATGAATCTATGTCTAGCGCTCCAACAGGGACGACCAACGATGCTG AGCATGTGCAGTCTAGTGGACTTCGAAGTCGCAAACAAGTGCACTCTAGATCCACTAGTCCAGGGACAACTGCCCCAAAT TATTCTGATCAGCAATTAGTTGGCTCTGGGGGAGTTAACCTAAGTCATACAGTGCAAAATGAGCTTGTAGTTGTTGGACA TCATAAACCTCAAAGTTCAACGCATAATGGAGGATGGATTGCTAGAATTGCAGCATTGCTTGTAGGTGAGGATCCAACAC ATTCTTATGCACTCATATGTGGGAACTGCCATATGCATAATGGTCTTGCTCGGAAAGAGGAATTCCCGTTTATCACTTAC TACTGCCCACACTGCCATGCCCTGAACAAACCAAAGCAGTCGGGTGAGCAAATCTCCGGTTTTAATTCCCCAAAAGCAGA TAATGGTGAGGCAGATAGGAATCCTAGTGCTTGTGCAGCTGACAAATTAATGAGAAGCAATAATCCGGTAAATACCAGCC CTGAGACCGAGAAGAATCTGTAG
Protein sequence (LotjaGi5g1v0064300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEEKETSAAAATNTDTTKKKQRKGLISRIWNVIFRSNGNDLEKRLQHLSKAEASVMNKIANRSRFRSRILRNLILFSVL FQVIAVVYATMTTRSVGMNWKMRAIRVLPMFLLPALSSAAYSFFVSFIRMCDRRDQKTLETLRAERQAKIDELKEKTNYY ITQQLIQRYDTDPAAKAAAATVLASKLGADSGLKVHVRDESMSSAPTGTTNDAEHVQSSGLRSRKQVHSRSTSPGTTAPN YSDQQLVGSGGVNLSHTVQNELVVVGHHKPQSSTHNGGWIARIAALLVGEDPTHSYALICGNCHMHNGLARKEEFPFITY YCPHCHALNKPKQSGEQISGFNSPKADNGEADRNPSACAADKLMRSNNPVNTSPETEKNL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 69 | 69 | - | – | |
| PANTHER | 15 | 345 | 331 | 3.2E-153 | ||
| PANTHER | 15 | 345 | 331 | 3.2E-153 | – | |
| Phobius | 70 | 91 | 22 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 92 | 110 | 19 | - | – | |
| TMHMM | 107 | 129 | 23 | - | – | |
| Phobius | 111 | 128 | 18 | - | – | |
| Phobius | 129 | 380 | 252 | - | – | |
| Coils | 136 | 156 | 21 | - | – | |
| MobiDBLite | 201 | 250 | 50 | - | – | |
| MobiDBLite | 202 | 250 | 49 | - | – | |
| Pfam | 279 | 329 | 51 | 2.9E-19 | ||
| MobiDBLite | 333 | 380 | 48 | - | – | |
| MobiDBLite | 365 | 380 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Endoplasmic reticulum tubular network organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that that has membranes with high curvature in cross-section. |
Expression pattern of LotjaGi5g1v0064300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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