Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0065000 |
| Transcript ID | LotjaGi5g1v0065000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT2G24450.1 FASCICLIN-like arabinogalactan protein 3 precursor; Swiss-Prot: sp|Q9ZQ23|FLA3_ARATH Fasciclin-like arabinogalactan protein 3; TrEMBL-Plants: tr|I3SKV7|I3SKV7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0065000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:10873340..10875277) extracted from Lotus japonicus Gifu genome v1.2.
CGCCTTGTGTATTACATCAAAGAGTAGTTGCAAATTTAGCAAAACTTCTAATTTTGAGAAACCACGTACTTCATTCAAAT CACCACCAATCATGTTATCCTAAAATTAAGCAGTTACTCAGTATCCTCCGCTTGTTTGAATATGCAAATCATGCCCAACC ACCCACATATCCTTCATGTAAAAAATAGCAAGGTAGAGAGAGAGGTTCTCTCATCACCAATGACCAAAGTTAGTAAGTTT CTGAACATGCAAAATGTCCTCCCTTGATTCCCTTTCTACGTAACATATATAAACCCCTTTCACCCTCCCATGTTCTTCAA GCTTGGTTTCGGATCCAAAACAGAAAAACAAAAAATAAGAAAAAAAGAAATAAACAGAAGAGAAAAGCTTGTCACAAGAT GGGTTTCAAAAGCTCTTCTCTTCTCTGCTTGGCTCTTGTCCTTGCAGTCTCATCTGCCACTCAGGCATTTGACATCACAA AAATTCTATCCCAATACCCAGAGTTCTCCACATTCAGCAAATACCTCACCGAAACCAAGCTCACCGAGCAAATAAACAGC CGCAACACTATCACCGTCCTCGCCGTCGACAATAGCGCCATCTCCGCCATCTCCGGCAAGTCCGCTGATGCCATCAAGGC CGTCGTCAGCACCCACATTGTCCTCGACTTCTTCGATGAGAAGAAGCTCATGGAAGCCCTCGGCAGCAAACAACAATTGA CAACCCTCTACCAAGCCTCCGGCCTTGCCGTGAACCAGCAAGGGTTCCTCAAGGTTGCACTCATCGGCGAGGGTGAGGTT GCCTTCGGCTCCGCCGTCAACGGTGCTGCCACCGATGCCGAGCTCGTGAAGACCGTCACCAGCCAGCCCTACAACATCTC CGTCCTTCAGGTCTCTAAGCCTATTGTGTTCCCTGGTGCCGACAAGGCTTCTCCTTCACAGGGTGCTGCTAAGGCCCCAG TGCCCGCACAAGGTGCCAAGGCCCCTGTGCCCGCTAAGGGCGCCAAGGCTCCCGTTGCTGCACAGGGTGCCAAGGCACCT GCTCCTTCAGCTGACAAGGTTGTGGCAACATCACCTTCCAGTGATGTTGCTGAAACCCCAGTTGATGCCCCAACAGCATC AAGCCCATTGGCTTCAGGTCCGGCTTCAGGTCCCGATGCTGCAGATGCTGCAGCTCCTTCCAGCGCTTCAAGCACCACCA AGGTTGGTTTGGTTGGAGCAGTGATGGCCTTTGCTTCTGTCTTGGTCGTTTTGTAAATTGATTAAGATCGAAAGCAAATG ATTAAGATATATACATTTCAATTGTAATACACTTGTAGAAGAAGAGTGAAGAGGGAGAGAGGGGAGAAAAAGAAAGAGGA CAATATTGAAAGAGACAAGGTTTGTTATTATTGAAACTATTTGTTAATGATATCAAACTCTAGTGCTGTAGATTTTGTTT ATTTTTAGAAGTCAAATGCATTGATAGAAATTCAATCAAGGTAAAGGTACACATGCCCAATACCAGTTTTCAATCATTAA ATTATCGTTTAACCCAAGAAATAAAAGTAAAAGGTTAAAAAGTATTTTTGACCCTAATGTTTCAAGTTTGTGCAAATTCT GCCCTTATTCTATTTTTGTCGTTGTTTCTACCCCTCGTGTTTTCAAACAGTGCACCGTCTACCCCTCCGTCAGTCGGATG TTAAAAAACTAACGAAATGAGCTGATTTGGCTTTATTTTTTTTATATTTTTTGGACCAGCCACGTGGAAATTACAAGTGA AATTGGAAAAAGGGGGCATGAGAGATTGAAACTCAAGACCTGTAAGTAGCAAAACATGCATTTAACCAGTTCCGTAACAT ACATAATTGATATATACATCAAGCAAATTTAATTTTTATTATTTCTTTGATCATCATCAACTTCATATACTCCTCTTCAT CTCTCCAATCTACTCAAG
CDS sequence (LotjaGi5g1v0065000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTTCAAAAGCTCTTCTCTTCTCTGCTTGGCTCTTGTCCTTGCAGTCTCATCTGCCACTCAGGCATTTGACATCAC AAAAATTCTATCCCAATACCCAGAGTTCTCCACATTCAGCAAATACCTCACCGAAACCAAGCTCACCGAGCAAATAAACA GCCGCAACACTATCACCGTCCTCGCCGTCGACAATAGCGCCATCTCCGCCATCTCCGGCAAGTCCGCTGATGCCATCAAG GCCGTCGTCAGCACCCACATTGTCCTCGACTTCTTCGATGAGAAGAAGCTCATGGAAGCCCTCGGCAGCAAACAACAATT GACAACCCTCTACCAAGCCTCCGGCCTTGCCGTGAACCAGCAAGGGTTCCTCAAGGTTGCACTCATCGGCGAGGGTGAGG TTGCCTTCGGCTCCGCCGTCAACGGTGCTGCCACCGATGCCGAGCTCGTGAAGACCGTCACCAGCCAGCCCTACAACATC TCCGTCCTTCAGGTCTCTAAGCCTATTGTGTTCCCTGGTGCCGACAAGGCTTCTCCTTCACAGGGTGCTGCTAAGGCCCC AGTGCCCGCACAAGGTGCCAAGGCCCCTGTGCCCGCTAAGGGCGCCAAGGCTCCCGTTGCTGCACAGGGTGCCAAGGCAC CTGCTCCTTCAGCTGACAAGGTTGTGGCAACATCACCTTCCAGTGATGTTGCTGAAACCCCAGTTGATGCCCCAACAGCA TCAAGCCCATTGGCTTCAGGTCCGGCTTCAGGTCCCGATGCTGCAGATGCTGCAGCTCCTTCCAGCGCTTCAAGCACCAC CAAGGTTGGTTTGGTTGGAGCAGTGATGGCCTTTGCTTCTGTCTTGGTCGTTTTGTAA
Protein sequence (LotjaGi5g1v0065000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGFKSSSLLCLALVLAVSSATQAFDITKILSQYPEFSTFSKYLTETKLTEQINSRNTITVLAVDNSAISAISGKSADAIK AVVSTHIVLDFFDEKKLMEALGSKQQLTTLYQASGLAVNQQGFLKVALIGEGEVAFGSAVNGAATDAELVKTVTSQPYNI SVLQVSKPIVFPGADKASPSQGAAKAPVPAQGAKAPVPAKGAKAPVAAQGAKAPAPSADKVVATSPSSDVAETPVDAPTA SSPLASGPASGPDAADAAAPSSASSTTKVGLVGAVMAFASVLVVL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 284 | 284 | 7.6E-99 | ||
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 284 | 284 | 7.6E-99 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| ProSiteProfiles | 23 | 169 | 147 | 11.209 | ||
| Gene3D | 24 | 160 | 137 | 2.9E-8 | ||
| Phobius | 24 | 285 | 262 | - | – | |
| SUPERFAMILY | 29 | 172 | 144 | 5.62E-15 | ||
| Pfam | 34 | 121 | 88 | 6.7E-7 | ||
| MobiDBLite | 176 | 261 | 86 | - | – | |
| MobiDBLite | 221 | 246 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0065000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…