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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0067000 |
| Transcript ID | LotjaGi5g1v0067000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Arginine/serine-rich splicing factor, putative; TAIR: AT4G31580.1 serine/arginine-rich 22; Swiss-Prot: sp|O81126|RSZ22_ARATH Serine/arginine-rich splicing factor RSZ22; TrEMBL-Plants: tr|I1M9U2|I1M9U2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0067000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11136793..11142146) extracted from Lotus japonicus Gifu genome v1.2.
AGACCACACTCGACTAAAAAGGGTCAAAACCAGTTTGCGAAGGAGGCTGCTAGGGTTTTTATCTCACATCGCTTCAGGTT CAGATCTCTCTTCTCTTTTCTCAAATTCCAACCTCCATCACCTTTTTCCATCACAAAATTCTTCAATTTTCTTCATGCTG CACGGTTTCCCCTATCTTTCTTCGATTTTCATGTTCGGTTTCGTTGAAATTTTTCAAAATTCACTTTTTGTTGTTTAATT TGATTTGCGTGTTTGCTTGTGATCGGCAGGTTTCTTTTGAAAGGCTGAAACGATGTCTCGTGTGTATGTTGGTAACCTGG ATTCCAGAGTGTCAGAGAGGGACCTTGAAGATGAATTTCGTGTTTTCGGAGTTATTCGGAGGTAGCTCAAAAACCCTGAT TTTTTTTATGATGCTGCAATTTGTTTTCATGGTTCTATAAGTCTTGTTTGTTTTCAGCTTATGCTAATAATAAAAAAAAG CCTTTTTTTCCCAGAATTCTCATTGTAGTGATGTGAATATGAGATTGGATATATTGTTTTTTTTGTAATCATTAGTTTAA ATCAGGAATTTAAAACATGGGAGTTTTTTTTTGGAATGGAAAGATGCTCACTTTTTAGAATCCTCTATTGTAGCAATTCG GTCGAATTGGATGGCGATGAGTTTTGTGGATGGCTAGTTGTTTTGTGTTAACTTTGGGTTTTTCTTAACTGAACTTATGT GGGGGTTGTTAGTGTAAGAGGGAGATTTTTTTGGTTTCCTGAATTGAATTGAGCGTATATGTGATTACAATAGCTATGAT TAGTCTTCTTTCTCAGTTTTTACAGTGTATTCTTTTGCTGTTTGTTCTTATTTTGAACACAATTGTATGTTTCATGGATG TTTATGCAGTGTTTGGGTTGCACGGAGACCACCAGGTTATGCTTTTATTGACTTTGATGATCGCCGAGATGCACAGGATG CCATTCGTGAATTAGATGGTAAGTGTAGAAGGACTATTGAGTATTGAAAATGTATTGAAGTGCCACATATGTTTATTTAC CACATTCTTCTATCTGCTAATGCTGTATTATTGTTTCCCCCCTTTTCCGGTTGATATGTTGAAGGGTTTTCCTCACCTAC GTATTTAAGTCTTCTTTTTCATTTGAGGAAGTCATAGGCCCATGGGCAAGCAGATGCTTCTTTCTTCTACTTCTGCCTTG CAAATCTCTTATGCAAGCAGGCCTCTGCAGTAATGGTTTTTTCGTTAGTCTTCGGCAAAATCTGCTGATTTCTACAGTTT GTCTGCATGTAAAGAGAATTAAGAATGTGAACAGAGGATTTGCACTGCTTTGGACTGTTATCGCAAGCTACACATCTGTT GCATAATGGGTTTGTTTTATGAGATGTGTGCTGCTACGATTAACCTGTGAGTCATGTGAGTGCTGCCTGTGTTCTGTATG TCCCTATGAGCAATTTGTGCTCCTAGTTGTGAAAATATTATGGTAACACAATTATTGTCTTTACTGAATGAAGAACTTGT TCTTAGTTGTGCGTATATGATGCTTACTCTGTCTCATCGATTATGCCACATTTAAATTTTCTTTTGTTGATTTTTTCTTT GCACTTGAAATTGAAGCCCATGAAAAATCTTATTTCATAGGGATCTATTGAAAATTTTGACCCTTGATGCAGCCTAGTAA GTCATTGATCCTTGATTATAGCCCTATTAATGTCATTTGTTCCGTGTAGCAAAACTTAGCCTATTTTTTGGCACTTATTT TATTTCAGGTACTTCTCATCTGTAGTTTTTGTAAACAAGTTTTGTACATCTCCCATTGTAAATTTAATCTAGGCTATTCT GTTATTTTTAATCATTTAATGCTACTGCTCTCTCTTGTTTAAATTATTTTTAAAGATGAATGTGTTTGCAGGGTTATGGT TCAATTCCACAAATTATATACTTATAATATCTGTCCCTGAGAGCTAACATCGATGTGATATTTTTGTTATAATTTGTTTT TTTTAAAGTTTGACGTATCAAATATGTGATCTGTTTCAATTGTCTAATAAATCTAGTCAATTGGATTACTATTATTCTTG TCTTTTAAATTGCTCTCTATTTACCGTGACTTTTCTTTTCTGTTCCATGGAGCAGGCAAGAATGGTTGGAGGGTTGAGCT TTCTCACAATTCTAGAGGTGGAGGTGGCGGTGGAGGTGGTGGTCGTGGTGGTGGACGCTCTGGTGGTGGTGGCGGTGGTT CTGATATGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGC CGTAGCCGAAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGGTGAGATTGCTTTGTCATATTTTCTTCGGA TCCTGTGTGAAAATGTTGTGGCACTTGTATTTTGCTGAAGATGATATTTTATATTTTGATATTTTACTTCATAATCATGC AGTGAAAATTGTTGATCTACATGCTTTAGTAATAATTTTATGATTATGGTTTGTGGTTTTTTTTCTTTTCTTGTTTTGCA ATTGAAGTTGTGAAATGTCTACTCTTTTGCACCTTCGAATTTTGCTCATTTTTCCATGTATCTATAGTTGAAAGGTTGGA AGTGTTTGTTGTGATAACGATTGTTTCTTATAATGCATATTAATTGTATTTCGCACCTTTATTGTGTATGATCCAGAAGT TATAGTCCTCGTGGGCGCTCCCCTAGACGCCGCAGTGTTTCACCTCATGGTCGCGGCAGCTACAGCAGGTCACCACCTCC TTACCGTGCCCGTGAGGAGGTGCCTTATTCTAATGGGTTAGTCTGGAATTATGCTCACCCTTAAATGTTTCTTATGGTTA TTCATTATCACACTGGTAGATGCCTAATTTTTTAATGAACACTCTCTTAAATGTTAAGTTTTACTTAATCTGATATTTAA AATGATTATGTTTTTACTTTTTCGTGAGATTTGAGTCTCATGTGTTGAAGAAAAATTGTATTTTAAAATGACAAGGATAC TATGCCTTATATGCTTGCACTTTTTCTTTCGGTGTTTATCCAACGTATTTTCTCCCTGTTATGATTGAGGCTCTAATTTG CCTTGTATGTCTCGTTTGGCATATTTACTTTTATGTTTGTTTATCAAGAGTACAATGACAAATAAACATGATGACTGCAG TGGGTAGGAACTGGATTTTTTTAATGGGAGCCTGTGTCATATATTCAATTTGCTTGGCATGGGGAGTTCTTAGTTCTACA ATTCAATTTTCATTATGCGTTTGTTCTGACATCCTTCTAATAATATGCAGAAATGGCCTTAGGGAAAGGCGCCGAAGCAG AAGTTGATTTTAAATTTGGTAACTGCAATTAAGAGGACAGTGAGATTTTGTTAATTTAGGGGTGCTTGGACTTGCAGTAT GTGTCTGTTTTGTTGGGCAACGCCCTGAGATTCTACTCTTGTATTTGATTAGGTACTTTAATGATGTCTCAGGTAATGTT TCTTTTTTCTATGCAAGAATGCTTGTAGTCTAGTTGCATGTCCTTTAAGCTTGTTGCTACTATTTGTTAGAAATTCTGAT CTTTCTAAGACATATGCTTGGCTTCTCTGTTGAGGTTTCTTCTGGTACTGCTTCATTTTGTGCTGCTTCATTCATTGGGA TGAGGTCCCAGTTGGTTCTCTGGGATTTTCACTTTTTCGAATGCTTTTCTTCATGGCCGGCTACATTCTTGTCTCATTCA TCCGCAACACTAGTGATGTGCGCTCCTCAAATTTTTAATGGCATTTAGTTTTAACTGAGGTTGACTGGCCCTTGTTTTAC AGAATTGGTGCTTGTCTGTTTTTCCATGACATGATATTAAATCTGAATGTTAGGGTATGATATTTCTAATGGATTAGTGA TAAGTTCAGTGGTGACTTCGATCATATTTCCTATGTTGGAACTTGACATTAATGTTCTTTGTCCATAAAACAAATCTACT TATCCTTAATGGGCCTTTTATTAGATTTGTTTCCTTCATCCGTCTTATAAATTATGTTCTTTACTGCAAAAAATGCTTCA ATATTTTTGTAGCTCACATATTTCTGGTATTTAATTGCCAAACAAGGAGGAATAGAGATGAGTCAGCATGTATTTTGGGT GTCAATGTGAACATAGCCCACAGAGCCAACCCTGTAGGCAGGGTGGGTTAGTCAATTTAGCCCAACAATCTACATAATCC GACCCTCATGACTTGCTAAATCAATGTGATTCATGTATTGTTTTTTCATTGTGCAACCTACACCTCATTTTAGCTTAAAT GAATGTGTAACATTCATCCCAAATGTAATAAGGCCTTAGCTAAATTTTTATATTTCAATGATCTTGCATCCTTGTATGCA GGGTAGTTCTATAAAGTATGAACACTAACCTCAATAAAAATTAAGAAGTTCCACTCCATAGATCCAAATGGCCAACTAAT ATTTATTTGTAAAATTATTGACATACATGATTAAAGCTACACACATCACACTTGCCATGGGGATATATTCTTGCAGACTC ATCGGACTTCTTTAAGAACCTCTAGTTTGTTCTTTGTTTCTAACACTTGGTCCTTGTAATTTACTCTTCTAAAATTTGGA GTGAATTAGATTGTTGTAGCCTAGGTCATAGGTCCTAGCAAATGGTCGGACCTATTTACTCCCCTTAGCTTTGGGCACCT TGTTTAGTTGCTGGGATTGATTTTAGTTAGAAAAGTGCCTTTTCGGTTTCGGTGCAAAGGAGAATAATTGTCCTTACAAC CCAAATTACAGTAAAAGTTCATTTCTAATTTCTAATAATTTTGTGCTTTTATTTATTTATAGAAATTGGTTGTAACCAGA GTGGACCAACTTCCCAATTCATATTCATATCGATATGGAGTTTTGTTTATTATATTATAGAATGAGCCACTAACTGCTTT GGTCAAAAGGTGCATAGGTAATGAGTTCTCTTGGAACATAATTTGGTCATCTCTCGAGAGTTTTGTTCTTCCTCTTTACA ACCTATTTTGTCCTGGAGTTCTATAGCTGAAAATTTGTGATAAATATTATTTTCTTCACCATAAGATTTGAACTTTGTGT TTTCAAACTCACTCCCATAATCACTTATGATAGAAGAATTATGAAAGCCTTTTCTGATTTGCACTTACTTACAAAAGGTT GAAAAGTTCTCAAAAGAATGAACATTGTGGGATAGAAAAGGTACATGTAAATCTAGAATCGTCATCAATAATAAGTTAAT AACTAACCATAATGTTTTCCTCCAAGTTGCTTCTTGTAGGTCCAAATTATCAAGGTGTAGATGTTCTAATGGTC
CDS sequence (LotjaGi5g1v0067000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCGTGTGTATGTTGGTAACCTGGATTCCAGAGTGTCAGAGAGGGACCTTGAAGATGAATTTCGTGTTTTCGGAGT TATTCGGAGTGTTTGGGTTGCACGGAGACCACCAGGTTATGCTTTTATTGACTTTGATGATCGCCGAGATGCACAGGATG CCATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGAGGTGGAGGTGGCGGTGGAGGT GGTGGTCGTGGTGGTGGACGCTCTGGTGGTGGTGGCGGTGGTTCTGATATGAAATGTTATGAGTGTGGTGAACCTGGTCA TTTTGCTCGTGAATGCCGCATGCGTGGTGGTTCAGGAAGACGCCGTAGCCGAAGTCCACCTCGATTTCGTAGGAGCCCAA GTTATGGGCGAAGAAGTTATAGTCCTCGTGGGCGCTCCCCTAGACGCCGCAGTGTTTCACCTCATGGTCGCGGCAGCTAC AGCAGGTCACCACCTCCTTACCGTGCCCGTGAGGAGGTGCCTTATTCTAATGGAAATGGCCTTAGGGAAAGGCGCCGAAG CAGAAGTTGA
Protein sequence (LotjaGi5g1v0067000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGG GGRGGGRSGGGGGGSDMKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPHGRGSY SRSPPPYRAREEVPYSNGNGLRERRRSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 188 | 188 | 2.2E-87 | – | |
| PANTHER | 1 | 188 | 188 | 2.2E-87 | – | |
| Gene3D | 1 | 73 | 73 | 2.3E-20 | ||
| ProSiteProfiles | 2 | 73 | 72 | 16.193 | ||
| CDD | 3 | 71 | 69 | 1.80126E-34 | – | |
| SUPERFAMILY | 3 | 92 | 90 | 4.57E-22 | ||
| SMART | 3 | 69 | 67 | 5.7E-18 | ||
| Pfam | 4 | 61 | 58 | 2.4E-16 | ||
| MobiDBLite | 66 | 189 | 124 | - | – | |
| SUPERFAMILY | 81 | 117 | 37 | 7.33E-8 | ||
| Gene3D | 93 | 150 | 58 | 8.3E-8 | – | |
| SMART | 98 | 114 | 17 | 4.2E-5 | ||
| Pfam | 98 | 113 | 16 | 1.4E-7 | ||
| ProSiteProfiles | 98 | 113 | 16 | 10.971 | ||
| MobiDBLite | 103 | 118 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0067000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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