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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0070000 |
| Transcript ID | LotjaGi5g1v0070000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT2G37430.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11; TrEMBL-Plants: tr|A0A072VJY7|A0A072VJY7_MEDTR Cys2-His2 zinc finger transcription factor; Found in the gene: LotjaGi5g1v0070000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11575376..11576324) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGAAATGCTTTATTTAAATCAGTCAAAGTCCTTAACTCTGCCCCAAACACCTTATAAATACCAATCTCTAGCTATCT CGTAAGATCACATCTCAATCAATCACAACACCATCTTTTCCATATTTCACAACCTTATAACTACAGTGAACATTTAAATT TACATTGTACATTAATTAATTCTCTGTGCTTAATTAGCCATGAAGAGACAGAGAGATGAACAAGGATTCCAGAACATAGA TTTGGCAAATTGTCTAATGCTACTCTCTCATCCCATAGAAACTACCAAATGCAAACCCCAGAAACGTTTCAGCCCTGTGG AATTCGAGTGCATCACATGCAACCGCAAATTCTCATCCTTTCAAGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCTG AAGCGCGACAGAGAAGAATTCAAATCAGATGTCAAAACTGATCTGAGATTGGGAAACAAATATTCCAAAATGCATGAGTG TTCCATTTGTGGTCAAGAATTTGCACTGGGTCAGGCACTTGGAGGACACATGAGAAGGCACAGGGTTTCTACCAATGAAG GGTTGTTTTCACAGGTTGTTATGAAAGTTCCTGTTCTGAAAAGATCGAATAGTTTTAGGGTTATGTGCTTGGACTTGAAC TTGACGCCATTGCAGAATGATTTGAAGTTGTTGTTTGGAAACATGGCACCCAAAATGGATTCCTTTGTCATCTAATTCTT TGTTCACCTCATAACTTGACATGCATTGTGCGCAAGTACTTGATTAATTTCCTGATCTTTGGTTCTAATGTATTCTTTCA ATTCTTTAATGTGAATTAGTTTTTTTTATCAATTTATTTTGATATATTAACACTTAGTCTCTCTTCTATCTATTTTATCT TTCTATTCATTTTTTTTTTCTTTGATGAATGTCGATGTGTTCGAGAAACAATTGCATATTTCTGTTAAT
CDS sequence (LotjaGi5g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGACAGAGAGATGAACAAGGATTCCAGAACATAGATTTGGCAAATTGTCTAATGCTACTCTCTCATCCCATAGA AACTACCAAATGCAAACCCCAGAAACGTTTCAGCCCTGTGGAATTCGAGTGCATCACATGCAACCGCAAATTCTCATCCT TTCAAGCCCTCGGAGGCCACAGAGCGAGCCACAAGAAGCTGAAGCGCGACAGAGAAGAATTCAAATCAGATGTCAAAACT GATCTGAGATTGGGAAACAAATATTCCAAAATGCATGAGTGTTCCATTTGTGGTCAAGAATTTGCACTGGGTCAGGCACT TGGAGGACACATGAGAAGGCACAGGGTTTCTACCAATGAAGGGTTGTTTTCACAGGTTGTTATGAAAGTTCCTGTTCTGA AAAGATCGAATAGTTTTAGGGTTATGTGCTTGGACTTGAACTTGACGCCATTGCAGAATGATTTGAAGTTGTTGTTTGGA AACATGGCACCCAAAATGGATTCCTTTGTCATCTAA
Protein sequence (LotjaGi5g1v0070000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRQRDEQGFQNIDLANCLMLLSHPIETTKCKPQKRFSPVEFECITCNRKFSSFQALGGHRASHKKLKRDREEFKSDVKT DLRLGNKYSKMHECSICGQEFALGQALGGHMRRHRVSTNEGLFSQVVMKVPVLKRSNSFRVMCLDLNLTPLQNDLKLLFG NMAPKMDSFVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 165 | 163 | 1.8E-66 | – | |
| PANTHER | 3 | 165 | 163 | 1.8E-66 | – | |
| Gene3D | 39 | 114 | 76 | 7.4E-9 | – | |
| ProSiteProfiles | 42 | 69 | 28 | 9.847 | ||
| SMART | 42 | 64 | 23 | 0.56 | ||
| Pfam | 42 | 66 | 25 | 2.1E-9 | – | |
| SUPERFAMILY | 42 | 114 | 73 | 2.05E-7 | ||
| ProSitePatterns | 44 | 64 | 21 | - | ||
| SMART | 92 | 114 | 23 | 0.12 | ||
| Pfam | 92 | 115 | 24 | 4.8E-9 | – | |
| ProSiteProfiles | 92 | 114 | 23 | 9.681 | ||
| ProSitePatterns | 94 | 114 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0070000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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