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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0071600 |
| Transcript ID | LotjaGi5g1v0071600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Valine--trna ligase; TAIR: AT3G53490.1 valine-tRNA ligase; Swiss-Prot: sp|Q9CAL2|CRK3_ARATH Cysteine-rich receptor-like protein kinase 3; TrEMBL-Plants: tr|I1LYY0|I1LYY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0071600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:11837683..11842987) extracted from Lotus japonicus Gifu genome v1.2.
AGGGTATTGAATTTTTTCCAAAGAAGAAGAAGAAGAGGGTATTGGCAAGTTTTCCCATTTTGAACATTCAATGGCCTTGC CGCCAAAGTGACGTGGTAGGGCAGGTGCGTAATGTGCACGTTGAGTAGACCAGACTCTTTCTTCCGCCAACCAATCACGC GACTCGTCCAGTCTCCGCTCTCCCCTATTCAAAACCAAACTTCTCATCCTTTTCTCGTCAAAGTCGTCGTTTCGAAGTGG TGCTCCATTCCCATGATGTCGCTTCCCAATTCCAGAGTTTCCGTCGCCATTTTCCTCTCTTTCATATTCTTCACCTCCTT CCCAGGTAAATAAACTGTTCTTCAATTGCGTGTTGTAGATTATGTGTTTGTGTAAATGCTTGTGTGAATCACTAACTTTG GTGTTGATTGCATTTGCACAGGGTTGATGTTATGTGCAGTTGTGTCGCTAAATTCAATTGAGGTCTTCAGAACACACGAA TGGTTGAAAGCTACTTCAACTGTGTATTTCCTCTGCACAGAGGAGAACAAGACGGTGCTTCCAGATGTCAAAAGACCCCA TGTCTTTTACTCTTTCAATGGGAATGAATCTTGGCAGGTTCTTACCTTATTACTCCTTTGCTCTCCCTTTTAGCTTCCCA TGAACTGCTTTTATGCCTTCATTTTTGTCTATCCATCGCGAGCGAGTTCATTACAAGTAAATCAAGTGATACATGTGTTT ACACACTCTAATTTAGCTTATTTAGACAATAAGGGTTTTAACTTTGCCTATATTATGTCGTAGTCAGTGCTAAGCCCGGA GAAAGGATGAATGTTGTGCTAGGCCTGCGGCGGACAACAAAAAACTGACTGTATTCAATATGAATCATAGTCGACTTCAC TTAGTAGGATAAGACTTTTGTTTATGTTACTATAAGGGTTGTGACGTAATGCACTGGAAGCTTGAAACTTTGCATCCCAT GCATCTTTGCCTCAAGCCCTCAAGAACTAATGTTTATGTACCATTGACTGCATAATATGTCCCCAACTAATTATGGTTCT AGTTCAAGGGCATCACTCTGAGTCTCTGACTTTGTTGGTGGCCTTGAGTTTTACAAATGGAAAATGTGGAGTCAGTCATG TAAATGCAAAGTCATTTTGATGTTGGCTACCGTTCTTAGAATAATTTTCGAACTTTGGCAACTAGAGTTTATGTATGTAT ATTATTTACAAGCAAGCATTTGTGTAGCTGCTATTTTTCACTATTATCTTTGATGTGCTTAGGAATAGAAACCTTGATCA TTGAATTCCAAGTGTCTTTAGATTTGAGTGTTGCATATGTTACTGATTGATTGAAGCAACTACTGAGATTTCGCTTTGTG CTTCTAGCCTCTAAGCAGCTTTTCCAGTAAAAAGTGCAAGCGGTGTGGACTCTATGAGGAAGACAGCATTACTTCAGATG ATGTATTTGAAGAATGGGAGTTTTGTCCTTCTGATTTTACTGGACCTGATGGTGAATATAACAGGTTCAAGGAAAAGGAA TTCAATGCCACTTTTCTGTGCCAAGAGTGCTTATCGCTTGCTGGTGGTGAGTATCTTGTAACCTTTTTGCTTTGAAGATT CTTCTCTACCATAATTATGCTATTTGACCTATGAGTACATGAACTATATGAAAGAATTTTTTTACCTGTTGGATGCCATA GCAGAAGTTGTATAATTCATCAAAAGTATCTAACTTTAATGCATAAATGATTCTTTCAATCAGTAGTTGTAGTGAATGTA GTCAAAAGCGCAACTGAGCAAGTGACCTCAATTTGCTATTATATTTGAGTTGCTCGCTGTGATAACTTAAGTATATAAAT TAAAAACAGCAGATGACTTGGTTAAATTGAATAGATTTCACAATTCTAGAGAAAGAAACAAATATTAAATTGAATTACTC TGTCTTTCTTCTATAGTTTGTGTGTACTATGTAAACTTTCTCCTCTATCATGAAAATCTACCCAAAAGGGTACAACTAAT TTGAAAAAATGTTGTCAGCCCTCATAAGTTTGTTAACTAGGTCATTAGCTCATAGGTTTTTCTGGTTAAATATAATTTCT TCCCTATTTCTGCTGCATCATATGTTGAGTAAAATAGAAAAATGCATTCATTTGGTTGATTGCTGAATTGAAAGTGCATC CCTGTACCCCAAACATTAGAAGTGAAGGTTGTGAATGTTTAGCTAAACGAAATGAGTGCATGTTTACAGTTTTGCTTCAC ATGTGAATATAAACTACTTAGAACAGAATTTAACATCAACAAATCCATGAGACAAGGAGTGCTGAGATTTGACAATTCTT AAATGAGAGGTGTACTTTAGAGGGTAGAATGCAGAATTAGAAATATCGATTGAAAAAGCAATGTCTAGAATTGTGATAAA AAACCTAGACATGTATGCCAAAATATGAAGTTGTTTAAATATTGCATGTTGATCTTCCAATTAATGGTTATAACTTAGCA CTTTATCCTTAAAGTGTACTCTCATTTTAGAGGAGTCAAATCTTTTCACCAATAACAAATCCAGTAGGTTGGATTTGGCT CTTCTAAAGTGAGAGAGTCACTTCGAAGGGTAAAGTAAGGCATCACAACCATTTATAGAGACTACCTACTTTTAAAAGTC AATAAAGCAACTCAGTCAATGGTTGTGATGACTTATTTTACCCTCTAATTCACTTTAGAGGAGCCGGACCTGGAGAATAT TATATTTATTGAAGAAGTGCATAGGGTTCTTAGATCTCTTTCTTGAATAGTGTATACATGACTGGTCTCTTTGATATTGA TTTTTTGTACTTGTCAACTTGTGTATTTACTGGGTATGTGGGTATAGGTTGGTTCCTCTTGCATTTCTCCAATCACGAGT TTATCTATGTAGACCTCTTGAATTATATTTTCTGGTATGCTTGCATCGATGCTGGTTTACATAACATGCTATTATTTATT TTGATTTTATATTCCTAAGAGTAAGTATATTCTTGTTCTGCAGTTTCTAGCTCTTCTGATGGAAAAGGAATGCATATAGC AGTTGCGGTTTTGCTTAGTGTTTTGGCCTCAATTATAGTGATTCTTGGAGTGATGGGTGCATATAAATTCTGGCTAAAGA AGATAAGGGAACAAGACCAGACTCGGCTTTTGAAGTTATTTGAAGATGGAGATTACATGGAAGATGAGCTGGGCCTTGGT AGTGCCATAATGCTATAATGATAATGATAGAAAACAAAGTATAGTGTATAGACATAGTTAACCACAAAATCAATATACTC TAAGAAAAGAAGACCTTACTGGCCACGTGTCATGCTCTCCTTTACTTAGAAAAAGTTGAAAAAGTTACTACAATTTAAAA TCCCGCTCATTTTAGCTTTTCACATTTCTTTCTTTTTCAAAATTCAAAATTGTCCTAATCCCTCAAATCTTGCTACTCCT ATTTCTGTATTTCCCTCCTTCTCTCTCTCTGCCTTTCTTTTCCTTGAGCTGTGGTGTGGAGTTCATCTTCCCAATTTAGT ATACTCTCATTCTCATCATGTTTCACTGCTCCTCTTCTACACTCATTTGTTTGAAGTAGCTTGCTTCAACGCTTTTATTT TTACTTCCTCTGTAATCTATCTCATTCTCAAATTAGGCTTACCATTTGACAGGAAAACAAAAATCAAGCTGTTGTTGTTC TTCCTCTGTCTTCTCCATAAGAGGTAACACATCAAGGTTTGATTTTTATTTTTTTCCCTGCTATTTTTCTTTTGTTCTTC CTCTGTTGTTGTTCTTCCTCATTCTTTCGCTTTCTACTGCCACCATTCTTCTTTTTTCCTCTATTAAGTACTAACAAATA TGACTTCAGAAACGGGGAAATGTAATCATTTCCCTCTTTATGATTATGATTAAATTTTTGAAAAATTTCAACAAAATGTT TGGCATGTGGTCAATGACATGATAAAGATGTTGACTTTCATAAACTATATCAATAGTAAGGAGTGTGTTAAAGAGCGTAA AAAAGAGTATGTTTGCAATTCCTCTTTCATAAATTGTTTCCATGGATATCCAATATTCCAGCACAACTGTTAGATCTTTA GCTAGATCTGCTATTTCTTTTGCGTTCTTCTTTTGTGTCTTGACTTATTGCTTTCTTTGATAACAAAGCTTTGACCTTTT TTCTGTACTATCAGATTTTGAAGACAAAGCTTTGATTTTTTTTGTTCTATTTCAGATTTGACCTATTTCAGACAAAGCTT CTTCAGTCTCACTATTTTGTGCATATGTCTGTATATTGATGTGATCCTTTCCAGATTTAACCATTTTGTGATTGAAGTGC TTATGATACATTTCAAACTATCTTTGACAAGAACGATCTTAACAACTATTTAATGTAATGCTTGAAAGATTGAGAGAATT TAATTGATTTATCTTAATTCTTAACAAAGTTAATAAACGATTTGGAGCTTATGTTGTTTTCAAAGTGGCAGATGATGGAG TTGAATATCAAATTCAAAGAGGGTTCTCTATTTCCTAACCCAGTTAAATTACTTGCTATTTCTTCACTATAATTGATCAA GTTTCATCCTATTCTTAATAGCAATTATAGTTACAGTTTGTGACCTTATTTAGTTGCAAATGGAAGTCTAAATTGTAACA ATTTCTTTCACAAGTTTCTAGGTAAATATACCTACTATAGCTATGACATTTGCAACACTTTTATACAAAGCATACTGTTA CTATCTAATTGCTGGCTTCAGAGCATTTGTAAATTGTCCATTTGTAAATTGTCCACTGAAAGTTTTATACAAATTTCAAA CTGTTTTTATATACTTTAGTTGGGTAGTTTTGTTGTAAGAGTATTTTCAAGGATGAGAAAAATCAGCCTGGATTGCTTTC ATCTATGTTGTAATTTATTACTGATATATTCTTTGACTTGCTTTCTTTGTTGGACTAGGTGGCTTTATCTCTGGTCTCAG GAATATTTATGCTTTAACACCCTTAGATGTGTCTTCACTAGAAGTTAGACTAAGCTTAACTTTTATCACTGGGCAAGACC TATTAAAGCAGTTGATTGACCACTTTGCTTTCGTAAAACAAGACCTATTATAGGCAAAGGCTACAACCTTATGTATAGCA TTTAACATCTTTAAATGCTTAATTTTGTTGTTTGAGTTTTAATTTTTACATTCCATATATTGTTTTGATACAGCCCATCA CTCTAAATGCAATATTCCATTTATTTAGTCAAGTCCTATCGTCTTGGTTAAAGTTGTGTATTATCTGGTTTATAGTGATT TTTCTAGGAGTTGCGCTATTTGGTA
CDS sequence (LotjaGi5g1v0071600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGCACGTTGAGTAGACCAGACTCTTTCTTCCGCCAACCAATCACGCGACTCGTCCAGTCTCCGCTCTCCCCTATTCA AAACCAAACTTCTCATCCTTTTCTCGTCAAAGTCGTCGTTTCGAAGTGGTGCTCCATTCCCATGATGTCGCTTCCCAATT CCAGAGTTTCCGTCGCCATTTTCCTCTCTTTCATATTCTTCACCTCCTTCCCAGGGTTGATGTTATGTGCAGTTGTGTCG CTAAATTCAATTGAGGTCTTCAGAACACACGAATGGTTGAAAGCTACTTCAACTGTGTATTTCCTCTGCACAGAGGAGAA CAAGACGGTGCTTCCAGATGTCAAAAGACCCCATGTCTTTTACTCTTTCAATGGGAATGAATCTTGGCAGCCTCTAAGCA GCTTTTCCAGTAAAAAGTGCAAGCGGTGTGGACTCTATGAGGAAGACAGCATTACTTCAGATGATGTATTTGAAGAATGG GAGTTTTGTCCTTCTGATTTTACTGGACCTGATGGTGAATATAACAGGTTCAAGGAAAAGGAATTCAATGCCACTTTTCT GTGCCAAGAGTGCTTATCGCTTGCTGGTGTTTCTAGCTCTTCTGATGGAAAAGGAATGCATATAGCAGTTGCGGTTTTGC TTAGTGTTTTGGCCTCAATTATAGTGATTCTTGGAGTGATGGGTGCATATAAATTCTGGCTAAAGAAGATAAGGGAACAA GACCAGACTCGGCTTTTGAAGTTATTTGAAGATGGAGATTACATGGAAGATGAGCTGGGCCTTGGTAGTGCCATAATGCT ATAA
Protein sequence (LotjaGi5g1v0071600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCTLSRPDSFFRQPITRLVQSPLSPIQNQTSHPFLVKVVVSKWCSIPMMSLPNSRVSVAIFLSFIFFTSFPGLMLCAVVS LNSIEVFRTHEWLKATSTVYFLCTEENKTVLPDVKRPHVFYSFNGNESWQPLSSFSSKKCKRCGLYEEDSITSDDVFEEW EFCPSDFTGPDGEYNRFKEKEFNATFLCQECLSLAGVSSSSDGKGMHIAVAVLLSVLASIIVILGVMGAYKFWLKKIREQ DQTRLLKLFEDGDYMEDELGLGSAIML
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 57 | 57 | - | – | |
| PANTHER | 48 | 265 | 218 | 5.5E-123 | – | |
| PANTHER | 48 | 265 | 218 | 5.5E-123 | – | |
| Phobius | 58 | 81 | 24 | - | – | |
| TMHMM | 59 | 81 | 23 | - | – | |
| CDD | 75 | 120 | 46 | 0.00411491 | – | |
| Phobius | 82 | 207 | 126 | - | – | |
| TMHMM | 208 | 230 | 23 | - | – | |
| Phobius | 208 | 230 | 23 | - | – | |
| Phobius | 231 | 267 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0071600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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