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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0074000 |
Transcript ID | LotjaGi5g1v0074000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi5g1v0074000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12302485..12303414) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAATTGGGAGGTGGGATATGGGGAAATGGGAGTGGTTATTTAAATGGAGAAGAGCTTTGTTTGTGTGGGAACAAGAA TTGGTTTCAAATTTGATGCAGGAGCTGAATTCAGTTAATTTGGCAAGAAACTTACGTGATCGCTGGTTCTGGACGAAGGA GCCCGCTGGAGTCTACACTGTCAAGTCGGCATATAATGTTATCATGAAGTCGAATGATCAGAACTTCAATGAAATTGAGG CAGCATTTTTCAAGGATATTTGGTGCAAGTTTGTTCCTTCAAAGGTGGCAGCGGCTGGGTGGAAGATTGGCCTACAAAGA ATGCCTACCTTTGACAACTTGGTGAAGAGGGGGGTGATCGATCCGAATAACTCCCAGGCTGTGTGTGTTTTCTGCAGAAT GTTACCAGAAAATACTCAACATTTGTTTTTTTCTTGTAGAGTTGTCTATAATATTTGGATGACTGTCTATAATTGGATAG GTATTCAAGGGGTCCTACCACAAGAAGGTATGCAACATTTTCTTCAGCATGTGATTTTGGGCAAAGGGAAGGAAGTATGT GGGCTTTGGAAAACTGTCTGGTTTGCTACAATCTGGTCTATTTGGATAAGCAGAAATTCTGCAATATTTCATGCTAAGGA TATTGACTTGGGGGACATTTGTGACATGATCAAATGGAGATCTTGGTCATGGCTTAGAGCAAGATCTCACACTTTCAAGG TTTTGTTCTATGAGTGGGAGGCAAATCCGGTGTATTGCTTGTCATTGGGTGCAACATCTGGCAAAGGAAAAGGTGGCTAA ATGTTTTAAGTTTATTGTCTTTGGATTATAGTTAGTTAGTTGTAGCATATCTTGTCCAGGATATTGCCCCTTGGCTACTC TCGCCCCTTTCCTTGTACCTCTTTTCTCTTTCCCCTTTTTTTTCTTCTTC
CDS sequence (LotjaGi5g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAATGGGAGTGGTTATTTAAATGGAGAAGAGCTTTGTTTGTGTGGGAACAAGAATTGGTTTCAAATTTGATGCA GGAGCTGAATTCAGTTAATTTGGCAAGAAACTTACGTGATCGCTGGTTCTGGACGAAGGAGCCCGCTGGAGTCTACACTG TCAAGTCGGCATATAATGTTATCATGAAGTCGAATGATCAGAACTTCAATGAAATTGAGGCAGCATTTTTCAAGGATATT TGGTGCAAGTTTGTTCCTTCAAAGGTGGCAGCGGCTGGGTGGAAGATTGGCCTACAAAGAATGCCTACCTTTGACAACTT GGTGAAGAGGGGGGTGATCGATCCGAATAACTCCCAGGCTGTGTGTGTTTTCTGCAGAATGTTACCAGAAAATACTCAAC ATTTGTTTTTTTCTTGTAGAGTTGTCTATAATATTTGGATGACTGTCTATAATTGGATAGGTATTCAAGGGGTCCTACCA CAAGAAGGTATGCAACATTTTCTTCAGCATGTGATTTTGGGCAAAGGGAAGGAAGTATGTGGGCTTTGGAAAACTGTCTG GTTTGCTACAATCTGGTCTATTTGGATAAGCAGAAATTCTGCAATATTTCATGCTAAGGATATTGACTTGGGGGACATTT GTGACATGATCAAATGGAGATCTTGGTCATGGCTTAGAGCAAGATCTCACACTTTCAAGGTTTTGTTCTATGAGTGGGAG GCAAATCCGGTGTATTGCTTGTCATTGGGTGCAACATCTGGCAAAGGAAAAGGTGGCTAA
Protein sequence (LotjaGi5g1v0074000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKWEWLFKWRRALFVWEQELVSNLMQELNSVNLARNLRDRWFWTKEPAGVYTVKSAYNVIMKSNDQNFNEIEAAFFKDI WCKFVPSKVAAAGWKIGLQRMPTFDNLVKRGVIDPNNSQAVCVFCRMLPENTQHLFFSCRVVYNIWMTVYNWIGIQGVLP QEGMQHFLQHVILGKGKEVCGLWKTVWFATIWSIWISRNSAIFHAKDIDLGDICDMIKWRSWSWLRARSHTFKVLFYEWE ANPVYCLSLGATSGKGKGG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 11 | 11 | - | – | |
PANTHER | 5 | 227 | 223 | 1.6E-29 | – | |
Pfam | 52 | 146 | 95 | 1.9E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0074000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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