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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0074400 |
| Transcript ID | LotjaGi5g1v0074400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ataxin-10; TAIR: AT4G00231.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q5FVB0|ATX10_XENTR Ataxin-10; TrEMBL-Plants: tr|V7BUL9|V7BUL9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0074400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12349222..12352860) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATGGTGGAAATTCCCGAATTTGTTTGAAAAAAAACTTTGCAAAGGCCCATTTGCCCATGAATTTTAATGGCCCAAG TTGATATTTCAGCTTCTAAACCCCCCAAATTCATTGACCAAAAAAAATACCCCAAATTCAGAATAGAAACCCTAATTTTA CCCGATCTCCTTCCCATTCCCGGCCACCGGCGACCACTCAGGTCTCCGGCCACCGCGTCTCTGCTCCGTCCAAGCTCTAA GGTAATTTTTCTCTGCAATTTTTTCGTTTTTCCACTCTGTTTCTGCGTCCTCTCACCTCTGTTTCTCAGCTTCCCTCTCT TTCATCTCTCAAAGGCTTGTTTCTTCTCCTCTGTTGTTACTGACTTACTGTTGATTCTTCTCCTCTGTTACAACTTACAA CATTTTGTTCCTTCTCCTTTCTCCTCTGTTACTGTTTGCTTGAATCTCTGTTTTCTTTCCCCTTTTTAGTGCTGGTGGTG GTGGGTGTTCCTCTGTTTTGCAATGGCAAGTGGCATTGGCACTCAACTTGACTACACTACATTGGGATTGGATGATTAGT TATTTAGATTAAATTCTACTCTTTAGACTTTATTTGTCATGTTGTTTTGGTAATTGGTATGTAATATGATCAATGAGAGT ATGAGACTTAATATCTATCTAGTATCTAATATCTATTGAACCTTTGTCATGCTATTTGCTATTATATCTATGATATTGAG CCTATATTTGATGATATAAGTTGTTATTAGTTAGCAGAATTTTTATTTGTTGTATTGTATAATTGCATTATGCAGGTTTT TTAATGTGTGGCTGTATAATTGTATACATATATATATATACATATAAATTTATTAAGGCCGCCATGGCATCCACCATAAT TATATGGCGGTATTTTGGCTTTCCGCCATCCGTCATTGATAACACTGCTTTGAATGCATTCTTGATAGCTTAGTTTAAAA CTGTTGCATTTTGAGTTTTTGGGATGCTTAAGGGATGGATCTGATGTTGGAATCTTGCTTTCTGGTTGTGTTTGTATGAT GCTATATGCTTTGTTGTTCCTATTGTTCTCTTGGTGGATTTGTAAAGGCTGAACTGTATACTTTGTTCTGGATCTGTTTA TGGTTTTGAATATGGGTAATGGTGCTTAAATTCCCATTGGAATATCATAGAACTAGAGCATTAAGTCATGGTTTTGTTTG AAAAAGGTATTTGTGTTGATACAATCATTTGGGGATTATATTCTTATTTTAGTTATCATTTGTGTATGTTAGTATTAGTA TCTCCAATCATGTTATCAATTCGGTCACTGTTTCTGACTTGTTGCCAAAATTCAACAGGTATTATTGCATTGTATTGGTG ACTTGGTGCGAGCCATTCCATCCTCTTGAACCATCTCACATAAAACAAGCCAGTGTTCAATCTGAATTAGACCGAGAGAG AGGAAGAATCACTCACTTTCAAGCTTTCAACATTTACAACAAAGAAATGGCTGTTGATGCGCTGTCTTTAGAGCACCCCT TATCAGAAGATACCCTTCAATTACTCTTTAGTGCTTCTAACTCCTCTAACTTGGAAAACTCCTTAGAGGTTCTCATTTCC ATTTCCCGATCTGATTATGGGCGTTCGGACCTTGCTTCCAGAAAGGTTCTCCCTGCAGTGCTGAGTATAGTTCAGTCACT CACTCAGACTCGTCATCATGTTCTCTCGTTATGTTTCAAGCTCTTCAGAAACTTGTGTGCTGGAGAGGCTGCAAACCAGA ACTTGTTTCTTGAGCTTGGTGGGGTGGCTGTTGTTTCTGGAATTTTGAGGTCACAGGCTGGTTCTCCATGCCCTGATCAT GGGCTGGTTCGCTGGGGTCTGCAGGTTCTGGCAAATGTTTCTTTGGCTGGGAAGCAGCATCAACGTGCTATTTGGGAAGA GCTCTATCCGGTTGGGTTTGGTTCTCTTGCAAGACTTGGCACCAAGCAGACTTGTGATCCGTTGTGTATGCTGATTTATA CATGTTGTGATGGAAACCCTGAATGGTTTAGAGAACTTTCCAATGCTAATGGCTGGCATATAATGGCACAAATCTTGAGA ACTGCTTCTTCTGGTCAGTTAGTATTTTTTATGTATTTACTTGTGTTCTTTGCTGTTTTATCTATGTTGTTAGCCCTGAT TTTATTTATTTCTTTGCTTTTCTTATTTTATTGGTTTATTCCTTTTTACTTGTTATTCTTAGCCTTCTTAAAATTTAGGT TTTTACAAAAAGCTGTGACAAATCTAATGGGGTAATAAATTTGTTGGTGCTGCTGCAGCATGTTGCTTGTAAATTTCACT GTTTTCTGTGCTGTCATGAGTGTCATACGGTTCATGATGCTTTTTGAAGTTGTAAAAATGATTTATTTTGTCTTTTTATT TTGGCTTATCTTTTATTCATTGGCTTCCGACTGAACCAGCTAGCTTTGATGAGGATTGGATAAAGTTGCTAATTTCTAGA ATTTGCCTTGAAGAATGTCTACTGCCTGTGTTGTTTTCTGAATTACGGTTTGTGGATGCTCCTAAGGATGAAGATACTGA ATCAAATGAAAAGGAGTTTTCATCTGAACAAGCATTTCTTCTGCGAATCCTACCAGAAATCTTGAATGAGCGGATCAGAG ATGTCACTGTATCGGAGGATGTTGCTCTGTTTGTTTTTGGAATATTCAAGAAGTCTCTTGGGGTTCTTGAGCATGCGACG AGAAGCAAGTTTGGTCTTCCTAGTGGCTCTGCTGCCGTTGATGTTCTTGGCTACACTCTTACTATATTGAGGGACATTTG TGCTGAAGATAGTGTGAGAGGTAATAATGGCAAGGAGGATATTGTTGATGTGCTATTGTCGTATGGCCTCATAGAATTGC TTTTGTCTATACTAGGAGACCTTGAACCTCCAGCTATAATCAGGAAAGGAATTAAACAATTTGAGAATCAAGACGGCGCT AGTTGTTCCTCAAAACCATGCCCTTACAAGGGTTTCAGGCGAGACATAGTTGCACTTATTGGCAATTGTTTATATAGAAG GAAGCATGTGCAAGATGAAATCCGACAGAGGAATGGAATTCTACTGCTCTTGCAGCAGTGTGTTACTGATGAAGATAATC CTTTCCTGAGGGAATGGGGCATATGGTCTGTGAGGAATATGTTGGAGGGAAATGAGGAGAATCAAAAGCTAGTTGCTGAA CTGGAGTTTCAGGGATCTGCTGATGCGCTGCCTGAAATCGCCGCACTCGGTCTTCGAGTGGAAGTTGATCAGAGAACTAG GCGTGCAAAGCTTGTAAACAACGTCCCCTGAAAGATTACTATAACATGACCGTGTCCATACATCTTAGTCTTTTCTACAT GGTGTTACTTGGTTGAATTTTAGCTGTGATTTATTTTTTTAATTTTTATTTTCAAGAAGCTGAAGTTTTCATTGTCAATG GAAGCTCAGAAGAGAATTAATTTTTAGAATAGAAAATTATGGATGTCATGATAAACAGTTTGTGGAATTCCTGCCAATGC TCGTGACAATTTATCAAGCAACCTAGATTAGGGAGGAAAAATAGTTATAGTGAAAGACCCATAGCCACCGAAAATCAAAT AATAGAAAAACTTTTAAACACAGACCTTGGCCATTGTCC
CDS sequence (LotjaGi5g1v0074400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTGATGCGCTGTCTTTAGAGCACCCCTTATCAGAAGATACCCTTCAATTACTCTTTAGTGCTTCTAACTCCTC TAACTTGGAAAACTCCTTAGAGGTTCTCATTTCCATTTCCCGATCTGATTATGGGCGTTCGGACCTTGCTTCCAGAAAGG TTCTCCCTGCAGTGCTGAGTATAGTTCAGTCACTCACTCAGACTCGTCATCATGTTCTCTCGTTATGTTTCAAGCTCTTC AGAAACTTGTGTGCTGGAGAGGCTGCAAACCAGAACTTGTTTCTTGAGCTTGGTGGGGTGGCTGTTGTTTCTGGAATTTT GAGGTCACAGGCTGGTTCTCCATGCCCTGATCATGGGCTGGTTCGCTGGGGTCTGCAGGTTCTGGCAAATGTTTCTTTGG CTGGGAAGCAGCATCAACGTGCTATTTGGGAAGAGCTCTATCCGGTTGGGTTTGGTTCTCTTGCAAGACTTGGCACCAAG CAGACTTGTGATCCGTTGTGTATGCTGATTTATACATGTTGTGATGGAAACCCTGAATGGTTTAGAGAACTTTCCAATGC TAATGGCTGGCATATAATGGCACAAATCTTGAGAACTGCTTCTTCTGCTAGCTTTGATGAGGATTGGATAAAGTTGCTAA TTTCTAGAATTTGCCTTGAAGAATGTCTACTGCCTGTGTTGTTTTCTGAATTACGGTTTGTGGATGCTCCTAAGGATGAA GATACTGAATCAAATGAAAAGGAGTTTTCATCTGAACAAGCATTTCTTCTGCGAATCCTACCAGAAATCTTGAATGAGCG GATCAGAGATGTCACTGTATCGGAGGATGTTGCTCTGTTTGTTTTTGGAATATTCAAGAAGTCTCTTGGGGTTCTTGAGC ATGCGACGAGAAGCAAGTTTGGTCTTCCTAGTGGCTCTGCTGCCGTTGATGTTCTTGGCTACACTCTTACTATATTGAGG GACATTTGTGCTGAAGATAGTGTGAGAGGTAATAATGGCAAGGAGGATATTGTTGATGTGCTATTGTCGTATGGCCTCAT AGAATTGCTTTTGTCTATACTAGGAGACCTTGAACCTCCAGCTATAATCAGGAAAGGAATTAAACAATTTGAGAATCAAG ACGGCGCTAGTTGTTCCTCAAAACCATGCCCTTACAAGGGTTTCAGGCGAGACATAGTTGCACTTATTGGCAATTGTTTA TATAGAAGGAAGCATGTGCAAGATGAAATCCGACAGAGGAATGGAATTCTACTGCTCTTGCAGCAGTGTGTTACTGATGA AGATAATCCTTTCCTGAGGGAATGGGGCATATGGTCTGTGAGGAATATGTTGGAGGGAAATGAGGAGAATCAAAAGCTAG TTGCTGAACTGGAGTTTCAGGGATCTGCTGATGCGCTGCCTGAAATCGCCGCACTCGGTCTTCGAGTGGAAGTTGATCAG AGAACTAGGCGTGCAAAGCTTGTAAACAACGTCCCCTGA
Protein sequence (LotjaGi5g1v0074400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVDALSLEHPLSEDTLQLLFSASNSSNLENSLEVLISISRSDYGRSDLASRKVLPAVLSIVQSLTQTRHHVLSLCFKLF RNLCAGEAANQNLFLELGGVAVVSGILRSQAGSPCPDHGLVRWGLQVLANVSLAGKQHQRAIWEELYPVGFGSLARLGTK QTCDPLCMLIYTCCDGNPEWFRELSNANGWHIMAQILRTASSASFDEDWIKLLISRICLEECLLPVLFSELRFVDAPKDE DTESNEKEFSSEQAFLLRILPEILNERIRDVTVSEDVALFVFGIFKKSLGVLEHATRSKFGLPSGSAAVDVLGYTLTILR DICAEDSVRGNNGKEDIVDVLLSYGLIELLLSILGDLEPPAIIRKGIKQFENQDGASCSSKPCPYKGFRRDIVALIGNCL YRRKHVQDEIRQRNGILLLLQQCVTDEDNPFLREWGIWSVRNMLEGNEENQKLVAELEFQGSADALPEIAALGLRVEVDQ RTRRAKLVNNVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 230 | 225 | 4.7E-13 | ||
| PANTHER | 8 | 490 | 483 | 3.2E-130 | – | |
| SUPERFAMILY | 14 | 456 | 443 | 1.15E-14 | ||
| Gene3D | 288 | 485 | 198 | 4.2E-8 | ||
| Pfam | 388 | 483 | 96 | 1.3E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0074400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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