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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0078700 |
| Transcript ID | LotjaGi5g1v0078700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin response factor; TAIR: AT4G30080.1 auxin response factor 16; Swiss-Prot: sp|Q653H7|ARFR_ORYSJ Auxin response factor 18; TrEMBL-Plants: tr|V7BEU5|V7BEU5_PHAVU Auxin response factor; Found in the gene: LotjaGi5g1v0078700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12856906..12861018) extracted from Lotus japonicus Gifu genome v1.2.
AGTGAACTCTCCATTCCTTCATAAACTAGGATCTAACACTTTTTACTCTAAATTTTGTGGGTGTCAAAAATCGTCATTTG TTGGTGTGAATTTTTTATTATGTATACGAGTCAGAGGCTTTGTAGTAATTCCACCTCCTCCTTTTGATATTTTTGTTGGT AAACAAAGTCCTTTTTCTATTTGTAGTGTCATCCTGCGTATGTGCTTTTGGACTCTTCCATTGCATTTCACTGCATTGCA TCATCAATTCATCATTCACGACCAAATAATGAAAACCCCTTCCTCTGCAAAGACTGTAACTATGTTCCTGCATTTGTCCT CTTATCTGTGCATCCATGTCGTACATACACTTCATCATCTTTGAATATTGAACACCAAAGATTAATATTTTCTCAATTCA TTTTCTTAGTGGCGGTCTTTGTTGGTTCAGAAATTTTTGCTTAAATTTTGGAGTTGGAGGAGATCTTGTTGCAGAGATTC TTGTATAGTCAGTTATAGATTTTCCATTTTTCTGCATTTTTTTTTTCTTCTTGTTTCATTCTCTTTCCTCCTACTTTATC TCTCTTACCAGAGACAGGACAATGACTGAGACTGTAGTGGCCTGGATCTTCTTCAACTGTGTTCTTTAACAGGTTCAGCT TTTTGCAATGATTCAATTGTAACTTTATCAATCACTGTTTCACCAAAATGACCAAATTCCTCTGTAAACAGAAAACAGCT TGGTGGGTTTGAACTATTTCCATGAGTGTTCAAATTTTGAACAAAAAAGTGTTCCTCCTCCTCCTTCCATGAAAGCTTAG CACCCTTTGATATCTCCAAATTTCCAAGACATTATTAAGGAATTAATTGCAGAAATCAAAACAAACAAAGATAGAAACTT TTCAACTCTGAATTACACAATCAACAAAATCAGGACTAAAAAGAAGTTGTGTGGGCAATTGGGTGGTTTTCTTCTGGTTC CAGAGGTTGCGGTGATCATCTTACATGCTTTTTCAGGTAGGAAGCTCATAAAATGCAATTTCACTAATCTTTTAATTCAT GGAAGATAAAAAAAGTGAATTTTTTTCTGCACCCCATCATTCATTGTCATCAAAGCTATGTTTAATTTGGTAAAAACTAA CATACTTTGGGCAAATTTTGCAGTGAAAGTTATTAAAGATGATTACTTTCATGGACTCAAAGGAGAAATCAGAGGAAGTG GATAGGTGTTTGGATCCTCAGCTATGGCATGCTTGTGCTGGTGGAATGGTACAGATGCCAAGGGTGAACACTAAAGTTTA TTACTTTCCTCAGGGTCATGCTGAACATGCATGTGAACCTGTTAATTTCAGGAATTGCCCAAAGTTTCCACCTTTGGTTC CATGCAGGGTGGATTCTATCAAATACATGGCTGATCCTGAAACAGATGAGGTTTATGCAAAAATCAGGCTTGTTCCTTTG AATGGAAATGATGCTGGTTGTGACAGTGATGTTGTTGGTGGAAATGGAAATGACATCATCAATGGGTGTGAAACTCAGGA AAAACCTCTTTCATTTGCAAAGACATTGACCCAATCTGATGCTAACAATGGGGGAGGGTTTTCTGTTCCTAGGTACTGTG CAGAGACAATTTTCCCTCGTTTGGACTTTTCAGCAGACCCTCCTGTTCAGAACATTCTTGTGAAAGATGTTCACGGCGAG ACGTGGAAGTTCAGGCATATTTATAGGGGCACGCCGAGGCGGCATTTGCTCACTACCGGGTGGAGTAGTTTTGTGAATCA TAAGAAGCTTGTTGCAGGAGATTCCATTGTGTTTCTGAGAGCAGAGAATGGGGATCTCTGTGTTGGGATTCGACGAGCGA AAAAAGGCGGTAGTGAACCTGAGCGTGGTGGTTCCTCTGGGTGGAATCCTGAAGATCCTTATGGTAACAGAATCCTGAGA AATAGTAATAATAGCAATGTGTTGAACCCTAGTGAGAATATGTTGGGGACAGTGAAGGTGAGGGCTGAAGCGGTTATTGA AGCTGCCAATCTCGCTGCAAATAAGGAACCTTTTGAGGTTGCTTACTACCCTAGGGGAAGTACTCCAGAGTTTTGTGTGA AGACCTCTTTGGTTGAATCAGCAATGCAGATTAGGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTCGAAACCGAGGAT TCTTCGCGGATAAGTTGGTTTATGGGGATCGTATCTTCGGTTCAGGTTGCCGATCCACTTCTCTGGCCTAACTCACCTTG GAGGCTTCTCCAGGTAACATCAGATTTATTGATTTTTATTGCTTTGAACTAAAACAGAACACAAAATAGTGCTGGAATAT GGTGAACTATGCTTTAATCATGGAAGTACCTGAATTTTTCTCCCCAATATTATTCTTGTCATTTTTTTGTTTTATTATAT TCTAAAATGGCTTATCATCAACAATGTGCTTAGTTATTAGGTGTATGTTTGTATTTACTTTCAAGTTCGCCAGCCAAAAG TACATTTACTCCGGTGACACGAGACATGGATTGACCAAAAACACATTTAAACTGCCTTGGAATGTGTGCTGATAGAAATA CAAACACACCTACTGCAAATGTTTTGGGTCATTTCATTTTGTATCCTTCAACTTTGAAAATTGGATACATGTAGAGTTGC TAGTTGATGATAAAATGTGATAGCACATTTCCATTCAGTAATATTAAAAGCTGCAGTTACTAATATCTGTTTAAATTTAT GACTGGAGAATTCAGTATTGATGAACTCAATGTCGTTGTTTGTACATCCACTAAAGAATCTGCTTCTGTTTTTTAACTAT ATATTTGTTGTTTGCATGCCTATAAGAACAGGTTCTATTTGATAATAATGTTTCATGTGGTTCTTCAAACAACTTGCCTA TAAATGCATTGAAGCTGGTTATTTCTCTATTCTTTATCAACATGACTAATTTACTGAAGTTATATTGGTAGGTTACATGG GATGAACCAGATTTACTTCAAAATGTGACAAGGGTGAGTCCATGGTTGGTTGAATTGGTAGCAAACATTCCTCCCATAAA CCTTTCCCCTTTCTTACCGGCGCGGAAGAAGATGAGATTGTCTCAACACCCAGACTTCCCCTTTGACGGCCACATTCCTG TGCCGACATTTCCTCTAGGTCCCCGCAGCCCATTTGGTTGTCTACCCGAAAGCACTCCTGCTGGCATGCAGGGAGCCAGG CATGCTCATTATGGTCTAACCTTATCAGATCATCACCACCTCAATAAAGTGCACTCAGGTCTATTTCCGGCTGGTTTTCC GCTGCTCAATCACTCTGCTGCACCACCAAGTGTCTCCAGCTACCTAATATCGCAAAAGTCCGGCATGACTAGTGAGAATG TCTCTTGCTTGCTGTCCATGGCAGGTTCTACCAAGTCTTCAAATTCAAAGAAACAGGATGATGAAAAGAGACCCCAGCTT GTGCTTTTCGGCAAAACAATTTCACCGAGTAGCAGATTTGGAGGTCACTATGAAGTTCTTATGGAATCAGAAGATGTTGG TCAGACAATTGACCTCTCATTACATGTATGATGAATTGTACAAAGCATGTTTGACATGGAAAAATCTGAGATGCTAAGTT ATGTTTTCTACCGCGATATAACAGGTGAGAAGTCAAACACATTGGAGATGAACTGTTTTAGTAGGAATCACAAATCAAAA TCACTACCTTGCAATATGTTGTTCATCCAAGAAGCTTGACATATTTATCTCTTTGATGCTGTTGAAGAAACTTGGCAAGA TCAGCAAGCAGGTTGACCATTCTAATGCATTCTAGCCGCGGCACGACAATGTACGAGTGTAGTAGAGGAAATTAAACAAT TCTTTCAATTGTATAGCTGGTTCATGAAGTTCTCTATTTCCCAATCAAACTCTGCACTTGAATAATGTTTTTCTTCAATC TCAATATTGGGAATGTTTGAATTTTAAAATTTCTAATGGAGTGATCATAACTTGAGTTTTTCCTTCCCTTGTTTTCATCT TAACCTTGACTAGCTACATGATTTCTCGTGTAAGGCTTTTTTTTCTTTTTCCTTTGAGAAGGGGTAGAGATCCCCTTTAA AACTGTATTCACCTTTTCTGTTATGTGTTTTCC
CDS sequence (LotjaGi5g1v0078700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTACTTTCATGGACTCAAAGGAGAAATCAGAGGAAGTGGATAGGTGTTTGGATCCTCAGCTATGGCATGCTTGTGC TGGTGGAATGGTACAGATGCCAAGGGTGAACACTAAAGTTTATTACTTTCCTCAGGGTCATGCTGAACATGCATGTGAAC CTGTTAATTTCAGGAATTGCCCAAAGTTTCCACCTTTGGTTCCATGCAGGGTGGATTCTATCAAATACATGGCTGATCCT GAAACAGATGAGGTTTATGCAAAAATCAGGCTTGTTCCTTTGAATGGAAATGATGCTGGTTGTGACAGTGATGTTGTTGG TGGAAATGGAAATGACATCATCAATGGGTGTGAAACTCAGGAAAAACCTCTTTCATTTGCAAAGACATTGACCCAATCTG ATGCTAACAATGGGGGAGGGTTTTCTGTTCCTAGGTACTGTGCAGAGACAATTTTCCCTCGTTTGGACTTTTCAGCAGAC CCTCCTGTTCAGAACATTCTTGTGAAAGATGTTCACGGCGAGACGTGGAAGTTCAGGCATATTTATAGGGGCACGCCGAG GCGGCATTTGCTCACTACCGGGTGGAGTAGTTTTGTGAATCATAAGAAGCTTGTTGCAGGAGATTCCATTGTGTTTCTGA GAGCAGAGAATGGGGATCTCTGTGTTGGGATTCGACGAGCGAAAAAAGGCGGTAGTGAACCTGAGCGTGGTGGTTCCTCT GGGTGGAATCCTGAAGATCCTTATGGTAACAGAATCCTGAGAAATAGTAATAATAGCAATGTGTTGAACCCTAGTGAGAA TATGTTGGGGACAGTGAAGGTGAGGGCTGAAGCGGTTATTGAAGCTGCCAATCTCGCTGCAAATAAGGAACCTTTTGAGG TTGCTTACTACCCTAGGGGAAGTACTCCAGAGTTTTGTGTGAAGACCTCTTTGGTTGAATCAGCAATGCAGATTAGGTGG TGTTCTGGGATGAGGTTCAAGATGGCCTTCGAAACCGAGGATTCTTCGCGGATAAGTTGGTTTATGGGGATCGTATCTTC GGTTCAGGTTGCCGATCCACTTCTCTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTAC TTCAAAATGTGACAAGGGTGAGTCCATGGTTGGTTGAATTGGTAGCAAACATTCCTCCCATAAACCTTTCCCCTTTCTTA CCGGCGCGGAAGAAGATGAGATTGTCTCAACACCCAGACTTCCCCTTTGACGGCCACATTCCTGTGCCGACATTTCCTCT AGGTCCCCGCAGCCCATTTGGTTGTCTACCCGAAAGCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTC TAACCTTATCAGATCATCACCACCTCAATAAAGTGCACTCAGGTCTATTTCCGGCTGGTTTTCCGCTGCTCAATCACTCT GCTGCACCACCAAGTGTCTCCAGCTACCTAATATCGCAAAAGTCCGGCATGACTAGTGAGAATGTCTCTTGCTTGCTGTC CATGGCAGGTTCTACCAAGTCTTCAAATTCAAAGAAACAGGATGATGAAAAGAGACCCCAGCTTGTGCTTTTCGGCAAAA CAATTTCACCGAGTAGCAGATTTGGAGGTCACTATGAAGTTCTTATGGAATCAGAAGATGTTGGTCAGACAATTGACCTC TCATTACATGTATGA
Protein sequence (LotjaGi5g1v0078700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITFMDSKEKSEEVDRCLDPQLWHACAGGMVQMPRVNTKVYYFPQGHAEHACEPVNFRNCPKFPPLVPCRVDSIKYMADP ETDEVYAKIRLVPLNGNDAGCDSDVVGGNGNDIINGCETQEKPLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDFSAD PPVQNILVKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGSEPERGGSS GWNPEDPYGNRILRNSNNSNVLNPSENMLGTVKVRAEAVIEAANLAANKEPFEVAYYPRGSTPEFCVKTSLVESAMQIRW CSGMRFKMAFETEDSSRISWFMGIVSSVQVADPLLWPNSPWRLLQVTWDEPDLLQNVTRVSPWLVELVANIPPINLSPFL PARKKMRLSQHPDFPFDGHIPVPTFPLGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHLNKVHSGLFPAGFPLLNHS AAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDDEKRPQLVLFGKTISPSSRFGGHYEVLMESEDVGQTIDL SLHV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 538 | 527 | 3.3E-261 | – | |
| PANTHER | 12 | 538 | 527 | 3.3E-261 | – | |
| SUPERFAMILY | 121 | 229 | 109 | 3.27E-29 | ||
| Gene3D | 124 | 228 | 105 | 4.7E-39 | ||
| CDD | 125 | 226 | 102 | 6.34273E-23 | ||
| Pfam | 126 | 227 | 102 | 1.9E-22 | ||
| SMART | 126 | 228 | 103 | 2.2E-22 | ||
| ProSiteProfiles | 126 | 228 | 103 | 13.507 | ||
| MobiDBLite | 228 | 259 | 32 | - | – | |
| Pfam | 282 | 365 | 84 | 8.2E-31 | ||
| Gene3D | 319 | 392 | 74 | 1.7E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Response to hormone | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. |
Expression pattern of LotjaGi5g1v0078700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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