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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0078800 |
| Transcript ID | LotjaGi5g1v0078800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT5G03250.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9LYW0|Y5325_ARATH BTB/POZ domain-containing protein At5g03250; TrEMBL-Plants: tr|A0A151QWZ5|A0A151QWZ5_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi5g1v0078800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:12864192..12870384) extracted from Lotus japonicus Gifu genome v1.2.
TATACACAAAACATGTCACAACCATTTGTTTCGGTTATTTCAGTTATCATCTGCTTTAGACTCGCTACCTGTGTGTGTTG TGGACCATAATCACAATGAAACAACTGTACTCTTCTGCTCTCATCTCTCACTCCACATGCATCCTCTCCAATCTTCTTCC TCTACTACTCTTTTGCATGTTTTTCACTTTTGCCCTCTATTCTTCATACAACATTAAGCAATCTAGCTGCAATCATAAAT GGCGTTGATGAAGCTTGGATCCAAATCTGATGTATTTAGTCGTGAAGGACAAACCAGGTAAGTATATACATTTTTAATCA AAATTAAACCAATCTATATATTGCTCCAATGGGTTGTGTAACTTGTCTTATTCAATCAAAATGGATCTTCTAATTTTGTA TAAGGTCTTTCTTGTTCTATACATATAGTTTTTATTTTTTTGAATTGATCTTTAGGATGCTAAAGGTTTTCAATTTCATT GTCCTGTAAATTTATTCATCTTAACTTTGGGATCAAAATGTATAGGGATTATCCTTCCACAAATCATAAGCCAAAGGTAT TCTAGATACAAGCCTATGGTTCAACTTCATGCCCATGAAGAGGAAATTAGAAGTGGGCATTGATACTAGAAGCATATCAC TACCAATAGCTATTTTTTGCTAATGAAAGTTGAGTTAAAGGAGGATTCAATTTGATGAATTCCCTTATTAGTTAAGGAAG GGTCTGATTCTCATGATATTGAAATGTAATCAAAGAGAATTGTGTGTAGTACATGATCCTACATTAACTATTTATATATC AAGTTCGTTTGTAATTGATTATACTAAAATTGCAAAATACAGAAAAAATATCAAAGAACACATTAACTTTGTAGATTTAG GATTTTTTACACTTATTCAGAGGGCCAATTCTTCTTTAATATTAAACCAATGATTATCCTTCTTATTTCAGGCTTTGTAC AACAGGACTTGCAAGTGACATTACCATTGAAGTAGGTGAAGTATCTTTTCTTCTCCACAAGGTAGATATTTGAGTTGAAC TTCACATGAAGTCCACTTCCCCCAACTCTATGCCTTGCATTGCTAATTGGTCTCTATCAATTTCTGATCTCAACTATGCA TTCATCTTTTGATTTTGATTTTGCAGTTTCCATTACTTTCTAGAAGTGGATTGCTAAAGAAACTCGTTGCTGATTCCTCA AATGAGGATGGAACAAGTTGTGTTCTGCAACTTCACGACGTGCCGGGTGGAGATGAAACATTTGATCTTGTAGCCAAGTT TTGCTATGGCGTAAAAATTGAACTCACAGCCTTAAATGTGGTGAGTCTAAGATGTGCAGCAGAGCATCTACAAATGAATG AAAATTACGGCGAAGGGAATCTAATTTCCCTCACAGAGAATTTCCTGAATGAAGTTCTCAGTAGCTGGTCAGACTCCATA AAAGCTCTTCTAACATGTGAGCAAGTTAAGTCCTATGCAGAGGAACTTCGCATTGTTTCAAGATGCATCGATTCCTTGAC AATGAAGGCATGTTCTGACCCAAACATGTTCAATAGACACGATTGCTCGCACTCGCAGAGCCCTGCAGCTGACCCTGCCT TATGTAATGGAATATCTCCAGATGCGAAATCGCAGCTGCAAGGTGATGATTGGTGGTATGAGGATTTATCCTTCTTTAGC TTACCTATCTATAAAAGGCTTATTTTGTCCATTGAAGCTAAAGGTATGAAACCTGAGAATGTTGCTGCATCCCTCTTACA TTATGTTAGAAAGTTCATCCCATACATGAATAAGCAATCAAGCTTCAATGACAAAAGTAATGTGAGCCGAGCATCAACCC CAAGTAGAACTTCTGAAGCAAATCATAAGGCATTGTTAGAAGAAATTGTGGGTTTGCTTCCTAACAAGAAAGGGGTGATA CCCTCCAAGTATCTGGTTAGGTTGCTCCGAACCGCAATTATACTACATGCAAGTCCTTCTTGCATAGAAAATCTTGAGAA GAGGATTGGAGCACAACTTGACCAAGTTGAGCTTGTGGATCTTCTAATCCCAAACATGGGGTACTCGGTTGAGACACTCT ATGATATAGAATGCATTCAGAGGATCACTGATCATTTTATGTCCATATACCTTGCAACAACTGCATCAACCACTCCATGT GTAATTGAAGAGAGGCCTTTGATCACTGGAGCTGATGCACTCACACCTATGACAATGGTGGCGAATTTGGTTGATGCTTA TCTTGCTGAGGTGGCTCTAGATGTTAATTTGAAGTTGCCAAAGTTCCAGTCACTTGCTTCTGCAATTCCAGATTATGCTA GGCCACTGGATGATGGTTTGTATCATGCAATAGATGTGTACCTGAAGGTGAGACCATGCCTAGCTTGCCCAAGAAACTTA TTTCTATGCATTTTGTGAAATTTCTCTAGTTAAACACATGTTGTGACAGTGTTTAGATTTTTAAAAGGCACAAGATTTGA GGGTGTTAAGGTCTCATATTGACTAGAGATAAGATCAAATAAGCCCTAAGTACAACAATCCTCACCCTTGAGTTAGCTTT TTGAGTAGAAATAGCATAACTTTAATTCTAAGTGGTACCCGAGTCTATCATAAATCCATTTATTGTGCAACGCATATATT AGGCACTCGCATATCTTCAGTCTTGCAAACTTCACCCTCCAGTCATAAGCTTTTGGGGTAGTGATAGGTACGCATGGTTT AGTTAGTTAAGTGAGGGAATTATCATATAATTAGAAAGTTAGTTAAGAGGGTTAGTAAGGCTTGTTGCCTATAAATAAGA AAGGGGTAGAGAACATTAGTCATTCTGATATTCAGTTAGGAATTGGGTTTAGAGAGAGAAGTGGTTCTCTCTTAGGCTTG GAAGGGTGTTTGGTATCCCTTTCTCTTGTATCTCTCCCTAGTTTCCAATTGGGAATTAGGGTTTTCTATTAATAAAATCA GGGTTCTATCATTATGTTAGAACCAAATGTTTTATTGATGATAAACCCTAATTCCCAAACTGAGAATCAGGGCAGAGTAT AAGAGAAAGAGTCTACACTCAATCTCAAGAGAGTCCACACCCTCTTCCCAGGCCCCAAAACCCAAAGTGAACTAAAAGAT ACCCCTAACTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATAACATTCTAACTAACTCCCTAAGTATAACTAAC TAACTAACTAACCCCTAACCTTGAGTTCCTATCAATACTCCCCCCCTGAAAATTCACCTTGTCCTCAAGGTGAGGAACAA AAAGCAAACTAAAAAAGTGAATAAGTATGCTTACTATACAAAAGTGACAAATACAAGCTAAAACAATGAACCACCCAAAA TACAGCTATGCTAACAATACAAAAGTGACAATAATCACAGCTTCCACCTGGATCCCACTGCTCTTCTTCATTGCCAACAT CAGTAGTTAACTCCACAATTTCAGCGAAAACTTGAAAATCACCTGAGTCACTTTCCCACAGCACTTTTAAAATTACTTGT GACTCTTATTGGCTGGCTTCTTGTTGTCTCATATCAATGGGTAAATTGGATTTTAACCCAAAAGCTGAAAAGTTGGCCCG ATATTCATCAAGGCCCAATTCCTTCCAACTGAGATTTGGGCTTGGCCCATTTGGATTGCAAGTCCAAACCTTGATCTCTG CCCTCTCCGTCCTTGCGCTGTGCCCGTGAGTACCCATCCCCTCACAGCTTGACAGATCCAGCGGCGCCAAGTTACGGCCG CCATCACGCCACAACTCCGGCGGTTTCGCCGGTGGTGGAACTGGTCGCGCCACCCTCCAACAACTCCAAAGAGGACACAA CTCTACCTCTTCCAGTTTTGCAATATCCAGCGCACTACAAGGTGGCTTTGGTGGTTTCGCCGGCGGACGAATCGCCTTCT CCGGCGTCGAGAGACTCAAGTCTAGTGTCTTGGCCTCCAGAAAAGCTCGCTTTTCCTTCAATTTCGCTGGTTCACCCTCT TTTTCAAGATCGAATCTCTGAATTGCCACCGCCGCGGCATGTTCTGTCTCCGCCGCATCACGATTGGGTTTGTGCGGTGC TGCAATCTTCGATGGCCTCTGAAGCAACTTTGCTACCGCTCTCTCTGCCTCCGACGCAGCCTCTGATTTCTGTGGCGCTT CAACATTTGATTCCCCCTGAATCGCCCTCACCGCCATGGTTTCAAGATTCTCCAGCGACGCCTCTGCTTCAAAGGTTCGG TTTTTCTCTGCCGCTGAATCCAACTTCGACCCTCTCCTTTCTTGTTCAATCAGAATTGCTTCTTGAAAAACCTCAGAAAG AGAGTGAAGTTCACCAGATCGCACTTCTGCTTGTATTTCCTCACTTAATCCTTTCAAGAAGATGCCTCTGACAAACTCGG GATCAATTCCTCTCAAAGCTCCAACGTACTTCTCGAATTCCACCACATAATCCTCCACTTTTCCATTCTGTTTCAGAGAA AGAAGCAACTCAAATGGATTCTGAGACTTGGAAGGCTGAAACCTCCTCACCACTGCAATCTTGAACCCTTCCCATGATGG ATTGGGATTACAACTCATCCACCATTGCAACCAGGCAAGAGCCCTTCCTTCTAAGGCCTCCATGGTCGCTTGCATCTTGT CTTCCTCTCTCACCTTCTTCAACAGAAAGAAGCGCTCCATACTGTGTGTCCAATCATACGCATCAGCACCCCCAAAAATT GGAATTCCCCTCACCAATTCCTCTGAAATTCTTGCCATGCTCCTTGCTTCTTCCCTAGCGCAACAAAAAATTGGTGGTTC AGGCACCAGATCGGTGCTCTGATACCAATGTTAGAACCAAATGTTTTATTGATGATAAACCCTAATTCCCAAACTGAGAA TCAGGGCTGAGTACAAGAGAAAGAGTCCACACTCAATCTCAAGAGAGTCCACACCCTCTTCCCAGGCCCCAAAACCCAAA GTGAACTAAAAGATACCCCTAACTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATAACATTCTAACTAACTCCC TAAGTATAACTAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCAGGTAGATCCTTAGCTTTTGAGGTAGAGTTAAA CCTAGCTGAATTCTAATTAGAGGGGCGGGAGATAGTGTGAAATTTATGAAGAATTAGTGCTTGTTTGGTTTTCAGTTAGG AAGTCCGTTTGAAGCATTGGAATTCGAGATCACGATTTCCAATGCACATTCAGCCAACCCAACACTTTCACATTCACCCA ACTGAAAACCAAATAGGCTCTTAGATGCTTAGTTGAAATTAAAGAATAAATCATGAAAAGAATAGTTCAAATTTGCACAT TATTATGGCTAAACCTCACAGTATAATCAATTCCACTGTTAACAATGGTGTGTTAGTATTTATGTCAGTGCACATTCAAG TAAAATTGTGCTTTTGGCCAATTCATGTCTCTTGTGCCTTTGAACTAAATGTGACTTAAGCCAATTTGAATGTGAATACA AACACATATTATATGAATCTTTCTTTCCTTTGTACTTGTCTGTCTCAATTTGATCACTCTAACACATTTATGACAACTAC AGGCACATCCTTGGCTCATAGATTCTGAGAGGGAGCAATTCTGCAGACTCCTGAACTGCCAAAAGCTCTCATTGGAAGCA AGCACTCATGCAGCACAAAATGAAAGATTACCACTCCGAGTGATTGTGCAGGTCCTGTTTTTCGAACAGCTTCGCCTCCG AACATCAATTTCTAGCTGGTTGTTTGTTTCAGACAATCTTGAGAACACACAAAATCCCAGTGGTCAAATAGACCCTGCAC AAGGTGGTGAAAACTTGAGGGATCGTGTCTCAGAGCTAGAGAAGGAATGTTCAAGCATCAGGAATGAGCTGAAGAAGCTG ATTAAAACAAAGAGAAGTTGGACCATTTTCCCAAGATTCTTGTTTAGGAAAAAATCATAGTGCTGCAATTCATTAGAATA TCAAATAGCTGCAATATAAGCGCACCATCTCCTCTATGAATGGAAAATCAAATAAATTAAAATTGTTAATGTTGACTGAT AAAACTCATAGCTCAGGACAGGAGATCTTGTTCACCAACATTACTTTTATCACTGACTATTGAGATGACAATCACATTTT TGGTACAAATCAAGTGAAAAAATATCATCTAGC
CDS sequence (LotjaGi5g1v0078800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTGATGAAGCTTGGATCCAAATCTGATGTATTTAGTCGTGAAGGACAAACCAGGCTTTGTACAACAGGACTTGC AAGTGACATTACCATTGAAGTAGGTGAAGTATCTTTTCTTCTCCACAAGTTTCCATTACTTTCTAGAAGTGGATTGCTAA AGAAACTCGTTGCTGATTCCTCAAATGAGGATGGAACAAGTTGTGTTCTGCAACTTCACGACGTGCCGGGTGGAGATGAA ACATTTGATCTTGTAGCCAAGTTTTGCTATGGCGTAAAAATTGAACTCACAGCCTTAAATGTGGTGAGTCTAAGATGTGC AGCAGAGCATCTACAAATGAATGAAAATTACGGCGAAGGGAATCTAATTTCCCTCACAGAGAATTTCCTGAATGAAGTTC TCAGTAGCTGGTCAGACTCCATAAAAGCTCTTCTAACATGTGAGCAAGTTAAGTCCTATGCAGAGGAACTTCGCATTGTT TCAAGATGCATCGATTCCTTGACAATGAAGGCATGTTCTGACCCAAACATGTTCAATAGACACGATTGCTCGCACTCGCA GAGCCCTGCAGCTGACCCTGCCTTATGTAATGGAATATCTCCAGATGCGAAATCGCAGCTGCAAGGTGATGATTGGTGGT ATGAGGATTTATCCTTCTTTAGCTTACCTATCTATAAAAGGCTTATTTTGTCCATTGAAGCTAAAGGTATGAAACCTGAG AATGTTGCTGCATCCCTCTTACATTATGTTAGAAAGTTCATCCCATACATGAATAAGCAATCAAGCTTCAATGACAAAAG TAATGTGAGCCGAGCATCAACCCCAAGTAGAACTTCTGAAGCAAATCATAAGGCATTGTTAGAAGAAATTGTGGGTTTGC TTCCTAACAAGAAAGGGGTGATACCCTCCAAGTATCTGGTTAGGTTGCTCCGAACCGCAATTATACTACATGCAAGTCCT TCTTGCATAGAAAATCTTGAGAAGAGGATTGGAGCACAACTTGACCAAGTTGAGCTTGTGGATCTTCTAATCCCAAACAT GGGGTACTCGGTTGAGACACTCTATGATATAGAATGCATTCAGAGGATCACTGATCATTTTATGTCCATATACCTTGCAA CAACTGCATCAACCACTCCATGTGTAATTGAAGAGAGGCCTTTGATCACTGGAGCTGATGCACTCACACCTATGACAATG GTGGCGAATTTGGTTGATGCTTATCTTGCTGAGGTGGCTCTAGATGTTAATTTGAAGTTGCCAAAGTTCCAGTCACTTGC TTCTGCAATTCCAGATTATGCTAGGCCACTGGATGATGGTTTGTATCATGCAATAGATGTGTACCTGAAGGCACATCCTT GGCTCATAGATTCTGAGAGGGAGCAATTCTGCAGACTCCTGAACTGCCAAAAGCTCTCATTGGAAGCAAGCACTCATGCA GCACAAAATGAAAGATTACCACTCCGAGTGATTGTGCAGGTCCTGTTTTTCGAACAGCTTCGCCTCCGAACATCAATTTC TAGCTGGTTGTTTGTTTCAGACAATCTTGAGAACACACAAAATCCCAGTGGTCAAATAGACCCTGCACAAGGTGGTGAAA ACTTGAGGGATCGTGTCTCAGAGCTAGAGAAGGAATGTTCAAGCATCAGGAATGAGCTGAAGAAGCTGATTAAAACAAAG AGAAGTTGGACCATTTTCCCAAGATTCTTGTTTAGGAAAAAATCATAG
Protein sequence (LotjaGi5g1v0078800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALMKLGSKSDVFSREGQTRLCTTGLASDITIEVGEVSFLLHKFPLLSRSGLLKKLVADSSNEDGTSCVLQLHDVPGGDE TFDLVAKFCYGVKIELTALNVVSLRCAAEHLQMNENYGEGNLISLTENFLNEVLSSWSDSIKALLTCEQVKSYAEELRIV SRCIDSLTMKACSDPNMFNRHDCSHSQSPAADPALCNGISPDAKSQLQGDDWWYEDLSFFSLPIYKRLILSIEAKGMKPE NVAASLLHYVRKFIPYMNKQSSFNDKSNVSRASTPSRTSEANHKALLEEIVGLLPNKKGVIPSKYLVRLLRTAIILHASP SCIENLEKRIGAQLDQVELVDLLIPNMGYSVETLYDIECIQRITDHFMSIYLATTASTTPCVIEERPLITGADALTPMTM VANLVDAYLAEVALDVNLKLPKFQSLASAIPDYARPLDDGLYHAIDVYLKAHPWLIDSEREQFCRLLNCQKLSLEASTHA AQNERLPLRVIVQVLFFEQLRLRTSISSWLFVSDNLENTQNPSGQIDPAQGGENLRDRVSELEKECSSIRNELKKLIKTK RSWTIFPRFLFRKKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 575 | 575 | 0.0 | ||
| PANTHER | 1 | 575 | 575 | 0.0 | – | |
| Gene3D | 11 | 169 | 159 | 6.8E-12 | – | |
| SUPERFAMILY | 18 | 130 | 113 | 5.34E-18 | ||
| CDD | 20 | 123 | 104 | 1.08955E-40 | – | |
| Pfam | 25 | 114 | 90 | 5.0E-7 | ||
| ProSiteProfiles | 28 | 98 | 71 | 11.792 | ||
| ProSiteProfiles | 211 | 501 | 291 | 89.423 | ||
| Pfam | 211 | 477 | 267 | 1.2E-87 | ||
| Coils | 532 | 559 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0078800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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