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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0082700 |
| Transcript ID | LotjaGi5g1v0082700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal-associated protein; TAIR: AT5G03380.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9LZF1|HIP6_ARATH Heavy metal-associated isoprenylated plant protein 6; TrEMBL-Plants: tr|I3S6N7|I3S6N7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0082700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:13730045..13732782) extracted from Lotus japonicus Gifu genome v1.2.
AAATTTTTTTATGATGGAAGTAGGTTTTATTCTTTTACAGAGAAGTAGTACAATTCATAATACCGCTACTCTTTTTTCAG GTCTCAAATAAATAAAGCTAGCATAAAAAAGAATTTGTCAAATTCGTAAGTGAGAGTCCAGTCAAAAATGAATTTAGATG ATGAGTCAAGAGTCACAAGTCAGCCACAAGCCCACAACGCCGTCGTTTCTTGATATCAGTTGAGTCCTACTCGGCGGCAA CACCAAAAAACCCTTTAACACACATCACACATGCCACTATTCATTTAGTTCATTATTTAATTTACTATACGAACACAAAC ATTAGAATAAAATTTCTATACACACACTCTCTCCCCTTCACATGAGCCCAAACATCATCATCATCATCATTCATCCATTC CACATCGTTATAGATACATACATACACATGCCCCAAACCTATCCACATCTTACCCAACTAATCCATGACCTCATCACCCA CCGCTAGTGACTAGTACTCCCCATTCGTTTATATATATATTCCCCTCCCTTGCCTCCATTTCCACTCTTCAAACAAACCA ACAAACCCAGCAACATCTTATCTTATAATTTCATATCATACCCAAACACAAAAAATGGGAGAGGTTAGTTAGTTTTAATT TCATTCATATTTTCCCTTACTTTTCAGTTTAGTATATTCAATTCTAGATTCCTGGAATTTCTTTAACTCATGTCGTTTAT ATATACATGATATTGCAGAAAAAGGAGCAACCTAAGAATGAAACCGCGAAGAAGCCCGACGAAGGAGCTAAAAACGACGC ACCTGCCCCTATCGTTTACAAGCTCGACTTGCATTGCGAAGGATGTATCAAGAAAATCAAACGCACCGTTCGCCATTTTG AAGGTAATTAAATTAATTAATTACAAACCCCATTCATTCACCATTATAATCAAAAATCTCATTCATATACTCAAGAGGGT AGCTCAGTTAAGTGTGTGAGAAGAACTTTGGTTCGATCTCCATACAATACACTCTAAGAGATGGATAATTAATTTTAACC GTGACTGAATCCCGAATCTAATCGGATGTGTATAAAAATTAATTTCATTCCTATTTGAGATTTGAAATTCAGAAACTAAC GGAGTTGGAACTCAAACAGGTGTGGAAAACGTGAAGGCAGAACTGGAAGCTAACAAAGTGACAGTTACCGGTAAATTTGA CGCCGTCAAGCTTCAAGCCAAGATTGCAGAGAAAACCAAGAAGAAGGTGGACCTCGTCTCTGCTCCGCCTAAAAAAGACG CCGGCGCCGGAGAAAAATCGCCGGAGAAGAAGCCTGAAGAAAAGAAATCTGATGAGAAGAAATCTGAAGAGAAGAAATCC GATGAGAAAAAGCCAGAAGAAAAAAAGCCTAAAGAGGTACATACATAATCTTCTCTTTGAATTTCCGCTTCCATGCTTAA TTCAAAATTCTCTAACTCAAGTTCTTTTTGATTTATTCAGAGCACGGTGGTTATGAAGATCAGATTACACTGCGACGGTT GCATTAACAAAATCAAAAAGATGATTCTGAAGTTCAAAGGTGTGGAGTCGGTGAACCTTGACGGAGACAAGGATTTGGTG ACGGTGAAGGGGACGATGGACGCAAAGGAGCTGGTGGCGTACGTGACGGAGAAGACAAAGCGGAACGTGGATGTGGTCCC ACCAAAGAAAGAAGAAGATAAGAAAGAGAAAGAAGGAGGTGGTGAGAAGAAAGAGAAAGAGAAAGACAATAAGGACAAGA AAGATGAAGGTGCGGTTGCCGCGGCGGCGGCGAAGGTGGTTGAGGTTAACAAAATGGAGTATCAGTACCCGCTACAAACG CCGCCAATGTATTGGTACGACGGACAACATGAACAAGGTGCATCATCATCATCAAGCAGTTACGGTGGTTACGGTGGTTA TGGTGGTATGGAGGTTCATCATGAGCCAATGTATAATAATCATTACATGGAGCCCTCAGGGTATCATGTGATGAACCAGG GTTATCCCATGCAGCCACCACCACAACCGTTCTACATGCAGCCTCACCCTCCGCCGCAGATGTTCAGTGATGAGAATCCC AATGCTTGTTCCGTCATGTGATTTCCATTTTACTCGAGGAGCTATGGTTTTTGAGTGTGTATACTTTACACGCCGACGAC GACGCATGTAAATGAAAAAAATTAAGTATATAAATCGAGGGGAGGTTATATTTTGTATTAATATAGATAAATTAATTTTA TGATATAATTTTCGGATTTATATAATTTGGTCTTGTAGCTAGAGATAGAAGATGCTGGCTGGAGAATCCTGTCCAGATTA GAACTCGCTTGAGTTTGTTATGTTCTGACTATTATTTAATTTTATCATTATAAAATATTTATTTCGAGTTGTTATTATTA TATAATTGAATAAAATTTGATGATCTTACCAAAAATTTGTTTATGGTGCTGGTGTGGTTTGGTTTGGTGATATGGTTCCG ATTCTGGATTGCCTCACCACGGAACATGTGGAAAGGTGTTGTTTACTTGTTTTTGTCATGTGTGAGATTTTTTTTATTAC TTTCTTTCTTTTGGGATACATGTGTAAGAGAATTTTTATTTGTGGGATTGGTAACCTACCAATTTAAGCGGTTTCACTCT TCTTCTATCTTCTTCTTTCTTACTAATTGATTTTTTTATTTTTTTAAGGCATTTCACTTGGCGGTCATTATCGAGACTAA CCTCTTTGAGATGTGGAA
CDS sequence (LotjaGi5g1v0082700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGAGAAAAAGGAGCAACCTAAGAATGAAACCGCGAAGAAGCCCGACGAAGGAGCTAAAAACGACGCACCTGCCCC TATCGTTTACAAGCTCGACTTGCATTGCGAAGGATGTATCAAGAAAATCAAACGCACCGTTCGCCATTTTGAAGGTGTGG AAAACGTGAAGGCAGAACTGGAAGCTAACAAAGTGACAGTTACCGGTAAATTTGACGCCGTCAAGCTTCAAGCCAAGATT GCAGAGAAAACCAAGAAGAAGGTGGACCTCGTCTCTGCTCCGCCTAAAAAAGACGCCGGCGCCGGAGAAAAATCGCCGGA GAAGAAGCCTGAAGAAAAGAAATCTGATGAGAAGAAATCTGAAGAGAAGAAATCCGATGAGAAAAAGCCAGAAGAAAAAA AGCCTAAAGAGAGCACGGTGGTTATGAAGATCAGATTACACTGCGACGGTTGCATTAACAAAATCAAAAAGATGATTCTG AAGTTCAAAGGTGTGGAGTCGGTGAACCTTGACGGAGACAAGGATTTGGTGACGGTGAAGGGGACGATGGACGCAAAGGA GCTGGTGGCGTACGTGACGGAGAAGACAAAGCGGAACGTGGATGTGGTCCCACCAAAGAAAGAAGAAGATAAGAAAGAGA AAGAAGGAGGTGGTGAGAAGAAAGAGAAAGAGAAAGACAATAAGGACAAGAAAGATGAAGGTGCGGTTGCCGCGGCGGCG GCGAAGGTGGTTGAGGTTAACAAAATGGAGTATCAGTACCCGCTACAAACGCCGCCAATGTATTGGTACGACGGACAACA TGAACAAGGTGCATCATCATCATCAAGCAGTTACGGTGGTTACGGTGGTTATGGTGGTATGGAGGTTCATCATGAGCCAA TGTATAATAATCATTACATGGAGCCCTCAGGGTATCATGTGATGAACCAGGGTTATCCCATGCAGCCACCACCACAACCG TTCTACATGCAGCCTCACCCTCCGCCGCAGATGTTCAGTGATGAGAATCCCAATGCTTGTTCCGTCATGTGA
Protein sequence (LotjaGi5g1v0082700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEKKEQPKNETAKKPDEGAKNDAPAPIVYKLDLHCEGCIKKIKRTVRHFEGVENVKAELEANKVTVTGKFDAVKLQAKI AEKTKKKVDLVSAPPKKDAGAGEKSPEKKPEEKKSDEKKSEEKKSDEKKPEEKKPKESTVVMKIRLHCDGCINKIKKMIL KFKGVESVNLDGDKDLVTVKGTMDAKELVAYVTEKTKRNVDVVPPKKEEDKKEKEGGGEKKEKEKDNKDKKDEGAVAAAA AKVVEVNKMEYQYPLQTPPMYWYDGQHEQGASSSSSSYGGYGGYGGMEVHHEPMYNNHYMEPSGYHVMNQGYPMQPPPQP FYMQPHPPPQMFSDENPNACSVM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 343 | 343 | 1.9E-135 | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 343 | 343 | 1.9E-135 | – | |
| Gene3D | 25 | 93 | 69 | 4.5E-16 | – | |
| SUPERFAMILY | 29 | 83 | 55 | 5.11E-11 | ||
| Pfam | 33 | 83 | 51 | 6.2E-12 | ||
| CDD | 34 | 88 | 55 | 1.98054E-9 | ||
| ProSiteProfiles | 34 | 67 | 34 | 9.407 | ||
| MobiDBLite | 84 | 138 | 55 | - | – | |
| MobiDBLite | 100 | 138 | 39 | - | – | |
| Gene3D | 136 | 204 | 69 | 2.3E-16 | – | |
| SUPERFAMILY | 139 | 195 | 57 | 5.63E-11 | ||
| Pfam | 141 | 193 | 53 | 3.4E-12 | ||
| CDD | 146 | 190 | 45 | 1.14004E-5 | ||
| MobiDBLite | 201 | 233 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi5g1v0082700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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