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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0084700 |
| Transcript ID | LotjaGi5g1v0084700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein, putative; TAIR: AT3G09890.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q99728|BARD1_HUMAN BRCA1-associated RING domain protein 1; TrEMBL-Plants: tr|A0A0L9TWD8|A0A0L9TWD8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0084700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:14549408..14554263) extracted from Lotus japonicus Gifu genome v1.2.
ACGGCAAAGTGCAAGTGCCATTCATTGGAGTGGCGGCGGCGGCGACACACAGTCACAGAGAGGAGAACACAGTCGGCGAA ATCAAACCAATGGCGGTTCCGGGGAGGCGCAACGGCATGAACGAGGAAGACGAAGACGAAGAACCCATCGCCCTTTTCGA AGAAGAAGGTCTCATCGAAGATGATGAAGAAGCCGAAACGCCTCCTCATCTCCGTGCTCTCTCCCTCGCCGCTCAACGTG GCGACGTCAACGCTCTCCGCCTCGCTCTTGGTACATCAACCTCCCTCTCTCTCTCACAATTTCTGTTTTCTCTGTACACA TGATTCTCTTATACCTGTTTGTAGTTGAATATTGAGCCCTCTCTGCTAAACCCTTTTTAGTTCTTCGAAATTTAATCTAA ACCCTGTTTTTTGTTGAGGGGAAGTTTCGGGTTTTGAGAATTGTCACTGTGGTATTTCATTTTGCTACCAAAGGGTTGAG CTTGGTGATGTATTGTTGGTCATTTTTGGTTGTTATAGAGTTTAGGCTTTTAGGGTTTAGATTACTTCTGTTTGTTTATT TGTAAATTTATTGGGGAAATGGGTTCTGCTTGGAAGTGTGGTCTGCAGCACCAAGGAGAAGTGGCTTGGTAGGCATTCCT TGCCCAATGACTCCAACCTCTTTCCGGCACCATTTTTCAAATTAGCTTGTTGAAATGCACCTGTGAGCTTGTGGCAAGTT GTCCATAAGGTGTAGGAAAAGAAAAATTGATGGAGAAAAGGGACTTTATGGATTTGAGTGTATTAGATGTACTGTTTTAT TTCATTGGCATGTGAATCTGATGTGTCTTTTGTCTGGTACGTAGAAGAGAAGGTTTGAATTTATTGAAGATTGACATATT ATGCATAAGCGGTGTCAATAGGGTGTCAATAGGGCAATACGGCCCCCTAGCCATCCTAGATTTCTCATAGCAGTGCAGTT CAGTGTAGCGGATGTTGGGCTATTTGGCACTATTTGGCCCCTATCGTAAGGGATTGACAGAAACTCTAAACTGCTAGCAG AATATTAAGTATTAGTATTAGGGTATGTTTTGGGGGTATTTTGGGGTTTATGCTTCTGAAACATAATGAAAAACTTGAGC TTTGTCTAAGATGCCTATGACTTTTATTTTTATTTTTATTATGCATCTCACAGATTGAGTTTATTTTAGCATTTATATAT GCATATATGTAGTAGTATAAATTGTATCAAGAATTCCCACTATACCCTAAACCGCTATAGCATTTTTGGGGGTTGGCCGC TATCCGGGATTGACAACACCAGTTTGCATTGGGAACTTAAAAATAATACTCAATTGCTTCCAATTTGTTTGAAATTTTAA CACTTCTTCACTAGAACATTTTGTCCTCTCTGCTGATGCTTACCTCATGCTGCTTACCTGTAGATAACTTGACTGGTAGT ATTGATGAGCCAGTGGAGGATGGGGATTCAGCTCTCCATTTGACCTGTCTATATGGCCATTTGGAATGTGCCCAGGTTAT TTGTCTTTGCTTTTTCATGCCTTTGTATGCCCTTATTCTATGGCATGTCGTGAATTATTGATCTTGTTTGATATATTTCA GCTGCTGATACAAAGAGGAGCGAACTTGGAGGCTCAGGATGAAGATGGCGCGATTCCTTTGCATGATGCTTGTGCAGGAG GTAGTTTTACCCCAAAATGTGTTCTAAAAGTGTAGCTGATATTTCTCTTTTTTGTTTTTCAAAAGATTTTCAATATCATT TTGCTTTAATTGGCCATATCAGGATTTACGCAGATTGTTCAACTGATACTCAATAGTGCTAATGGCACAGAGCATATAAA AAGGATGCTTGAATCAATTGATTCTGAAGGTGATACTGTGAGTATTTATTTACCCTTGAGTTCCTAATATAAATTATAAT AATGCATGGTGCTTGGAATTTCTCATGTTTGTGAATATTATATCTTTTGGGAGGGAGGATAAGATCAGATAGATGCCAGA TAAATTTCCCTTCCTTGATACTCTTTCCACTATGTTGATGATAATCACCTGTTTCTCTTTGTTTTTGTTTTCAGCCTCTT CATCATGCTGCCAGAGGTGAGCATGCTGATGTGATTAGGTTGTTGCTGTCTAATGGTGCTTCTACCACAAAGACAAACTT ATATGGGAAGGTATAGCTTTTAGAATTTGACTTTGCTAAAGTAAGAGATGTACTATAGAAGCTATGTGTAAGTTATAACT TTGAGATTTTGCTAAAAAGCATAATGCACAGTTTCGCATATATAACAACGAACTATTAAGTTGTTAAAAAGTCTCAATGT TGATTTTCCAATCAATGGCTGTAATTTGCCCCTAAACCCTCTAAAGTGTCCTCATTTTTAGAGGATCCTAGTCATAGCTT TTAAAAGAATTTTAGAATTATCTGTTTGTCACAAGGTATACTATGTCGGTGCATGGGCATTCTCAATATTTAAGGCATAG TGATGTATTGTTAGATACCGCTCATTATTAGTGATAGTAAATATACTTGATTAAGCTCAAGTGCAAGTGACATATTGTTG GTATATTAAATATGTAAGAGATACCTATAGGGTCACACGCATAGACTTAGTCCACTAGAAAATATATCTTATTAGATAAG CCCAATTAAGCCCCAATAAGGATTAGGGTTAGCCTCCTTGTGGCTCTTATAAATAGAGCATAAGATGCTCGAACCCTACA TCAGATATTGCACACACTCTTTCCTCTTGCTAGTACAAGGAGCCGCAAGTGAATCCTAGTTGGAGAATTCGCGTGGACTG TTGTGGCTGCTACAACTGCTTTGTTTGCTCAGATCCTAATTCTCCTCTTACGTGTATGATTGTTGTTTGAACTTTGAAAC ATGACTTTGCAAGTTCTTTTATATAGGGAATTCTTATTCCGCTGCGGTAATCAACAGCTTGATTCCCTTCATGAAAGAAC TTGCAAAACCATGTTTCAAAGTTCAAACAACAAGCATACACGTAAGAGGTTATTAGGATTACCTCTTGACGATCTGAGCA AATGAAGAAGTTGTAGCCTCATCTCTACAACAATGCACGCGAATTCTCCCACTATGATTCACTTGCGGCTCCTTGTACTA GCAGATGGAAGAGTGTGCAATATCTGATGTAGGGTTTGAGCATCTTATGCTCTATTTATAAGTCTCACAAAGAGGCTAAC CCATCCTTATTGGAGCTTAATTGGGCTGGTCCAATAAGACATATTATCTAATGGGCTAATTCTATGTGTGTGACCCTATA GGTATCTTAGATATTTTGGTTGTAATATTTAAATATAAATATTAAGCTACTAGTGCATATATCAACAATCTCTCACTTGT GCTTAATCAATATATTTAATATCACTAATAATGTGCGGTAACTAGCAATACATCACTATGACCTAAATATTAAGAATGCC CTTGCATGCTGATGTAATTAGGTTGTTGCTGTCGAATGGTGCTTCTACCACAAAGACGACAGGTATAGCTTTTAGAATTT GACTTTGCTAAAGTAAGAGATGTACTATAGAAGCTATGTATGTGTAAGTTATAACTGAGATTTTGCTAAAAAGCATAATG CACAGTTTCGCATATATAACAGCGAACTATTAAGTTGTTAAAAAGTCTCAATGTTGATTTTCCAATCAATGGCTGTAATT TGCCCCTAAACCCTCTAAATTGTCCTCATTTTAAGAGGATACAAGTCATAGCTTTTAGAAGAATTTTAGAATTATCTGTT TGTTATCTTCTTTAATTTCTTTGTTAATTTTTGGCAGATCCCAGCAGAGTTACCTGATCATGGCACAGATGCTAAGTTGC TGCTGGAAGCAGCCGCTACACAAATGGCAAGCTAATAGCATAAGAACGGCAGTTAGTGGAAATATTTAGTTTCATTCTGA CCGATAGTTCTCAATTCGGGCCATACAAAGTGTTATACTGTATACTCATTTCTCGTAGTACCGATTTATTTGGACACCTT CGCGAATGAAAACTTTGGAGAGATAACAACGAGGATTCACGGATCAATTTATTTTTAGGGCACTACCTGGCCTATTTTCA TTAGTTTGCTTCTAAGTTGCATGGATACGGGTACGGTACCGGGTGCGGGTACGGGTATGAGGTACGGCAATTTTATAAAA TCTTGGGTACAGGTACGCTAGTATATATGTATATTATATATATATATATATATATATAATAGAAAAAATATAAAGTAAAA TAACATTCAATAAAGATATCATAATATTGATCCCATAAAAATTTAAAGGATAGATTATAACAAGTCAGAGAGTACGGAGT GAAGTGAAACATTTTAACATTGAAGATATTCAAGATTACCACTAATGTGTATTGAGATAAGCTTCCATTATGAAATTGAA GTTATAATTCAAAAGTACCAAAAAAAGTACCGAAAAACACTTATGGAGTACCCTAAGAGTACCATTAACGTACCCAGAAA GTACCCAATTTTTTTTTTGAAATCACTTTGGGTACGTATAGGTACGTATGGTGTACGTACCCATCGCGTACCTGTACCGG GTACGTACCACTTCACCATTTTTGAAGTACCGGTGGTTCCTTGGTTTGCTTATTTGTAATGTATTTACATATCAGGCTAT TACTGAATTAGGTTATTGGTTCCGTGAGCATAAATTTGCATTTAATTCCTCTTCTCAACTTGATTAATTTTTGCCACTTT GAATGTTGATCATGTTCATGCATATTGGTTGAATGGTTTTAAATCCAAAAGTTTAGGTTGGCTTGCAACTCAGTAGTACG GAGTTCGATTATCATTTCGGGTATTGGAGCAAGCAACATTAGAAATCCCTGACTTT
CDS sequence (LotjaGi5g1v0084700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTCCGGGGAGGCGCAACGGCATGAACGAGGAAGACGAAGACGAAGAACCCATCGCCCTTTTCGAAGAAGAAGG TCTCATCGAAGATGATGAAGAAGCCGAAACGCCTCCTCATCTCCGTGCTCTCTCCCTCGCCGCTCAACGTGGCGACGTCA ACGCTCTCCGCCTCGCTCTTGATAACTTGACTGGTAGTATTGATGAGCCAGTGGAGGATGGGGATTCAGCTCTCCATTTG ACCTGTCTATATGGCCATTTGGAATGTGCCCAGCTGCTGATACAAAGAGGAGCGAACTTGGAGGCTCAGGATGAAGATGG CGCGATTCCTTTGCATGATGCTTGTGCAGGAGGATTTACGCAGATTGTTCAACTGATACTCAATAGTGCTAATGGCACAG AGCATATAAAAAGGATGCTTGAATCAATTGATTCTGAAGGTGATACTCCTCTTCATCATGCTGCCAGAGGTGAGCATGCT GATGTGATTAGGTTGTTGCTGTCTAATGGTGCTTCTACCACAAAGACAAACTTATATGGGAAGATCCCAGCAGAGTTACC TGATCATGGCACAGATGCTAAGTTGCTGCTGGAAGCAGCCGCTACACAAATGGCAAGCTAA
Protein sequence (LotjaGi5g1v0084700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVPGRRNGMNEEDEDEEPIALFEEEGLIEDDEEAETPPHLRALSLAAQRGDVNALRLALDNLTGSIDEPVEDGDSALHL TCLYGHLECAQLLIQRGANLEAQDEDGAIPLHDACAGGFTQIVQLILNSANGTEHIKRMLESIDSEGDTPLHHAARGEHA DVIRLLLSNGASTTKTNLYGKIPAELPDHGTDAKLLLEAAATQMAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 200 | 200 | 5.4E-78 | – | |
| PANTHER | 1 | 200 | 200 | 5.4E-78 | – | |
| Gene3D | 37 | 206 | 170 | 4.6E-37 | ||
| SUPERFAMILY | 37 | 186 | 150 | 1.28E-31 | ||
| SMART | 39 | 69 | 31 | 1900.0 | ||
| ProSiteProfiles | 39 | 183 | 145 | 30.211 | ||
| Pfam | 41 | 104 | 64 | 1.4E-8 | ||
| SMART | 73 | 102 | 30 | 3.8E-6 | ||
| ProSiteProfiles | 73 | 105 | 33 | 13.517 | ||
| Pfam | 106 | 176 | 71 | 1.9E-10 | ||
| SMART | 106 | 135 | 30 | 81.0 | ||
| SMART | 146 | 175 | 30 | 1.3E-5 | ||
| ProSiteProfiles | 146 | 178 | 33 | 13.277 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0084700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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