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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0088800 |
| Transcript ID | LotjaGi5g1v0088800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein CHUP1, chloroplastic; TAIR: AT2G36650.1 CHUP1-like protein; Swiss-Prot: sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic; TrEMBL-Plants: tr|A0A0B2SUL5|A0A0B2SUL5_GLYSO Protein CHUP1, chloroplastic; Found in the gene: LotjaGi5g1v0088800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15174782..15176749) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGCCCAACATGACAAATATCAATTTCCAAGTGCAATAGATTAATACAGAAAGGAATCAGATTCGTTATAGCTTGAG GAGGATGGTGTTGATGGTGGCGTAGAAGGCCTTTTGGAGTGGTCAAAAAGCCACATGTAAACTATTCTTCCAAACAAAGA AAATAAACAAGGTTAAATTATATAACTTTTTAAAACCTTTGATAGCATTAAGAAGGATCAAATTCAGATTTTTCTGGTTT AGTTTTCAATTGCATTTTGATCATTGGAATAGTCTAACAAACTTCTCCTTTTGTTCTTGATGGAAAACACAGCACTGAAG CCAGAAAATCTAAAGCCAGTTATCCTCAGAGCTGGTGTTCCCCTTGCTGTATCTGTGGCTGGTTTGATCTATGCATGGAT CATGGCAAGGAAAAGCTTATCCAAAATCTCTTCTTCATCAGAAAATGAGCCTGATTCCCCTGTAACCAATTGTCATGAAG GAAGTAAACAACATGAAGAAAGCTTTCCTAGCCATTCTTCTATGGAAGATGAAGAACCTGTTGTGACTCTGACACGGACA CCGGACACCACACGACACGGATACAGTGACACGGTTAACATCCAAAAAGTGTGTCGTGTCCTTTCTGGGAGCATGGAAAT CCTTGACAACCATCCATGTTTGGAACAAGAGATCACTGGCCTAAGAAGCCGAATCGAAAGTCTGCAAATGAGAGAATTGG CCTTAAATTTGCAGTTTGAAGAGTATTGTGAAATGAAAGAGCAAGAATCTCTGCTAATGGAAATCAACAACATGCTGGCA TTGGAGACCGCACGCGTCGAATTCTTGGATAGAGAGGCCTCATCCATAGAGGCAGAAACTATGAGATTGGAGAATTTTGC AGTCCAATACCTGAGGATCATTGAACAGCTTGAGTTTTGGAAATCAGAATATGGGATTCTTCAGAGGAAGGTTCAGAAGC TACATAGGAAAACAAAGGCGCAATCCCACTTGATAAAGGAGCAGACTTTGAAGATCAAAGAGGAACAAGAAGAAATCTTG AAGAGCCATGATGCCTTGCAAACAAGGATTAGTGTGATTAACAAGTTAGAGGATGAAATCAGAGAGCTAAAAATGGTTTT GGATCAATTGCAGGAGGAGAAGAATGAACTTCAGAAGAAGCTTGACACAGCAGAAGAATTTCCTTCTAAGGATCAGGTTC ATAGAAAACCACTGAAATATTATTTGCAGATTGAATCAGAAGATTACAGCCTGCTTCTGAATGAATTAGAGCAGGTCAAG AAGGAACGCGAAACTGAAGCTGAAGAATTGATTAACTTGAGGAGGATCAATGCTTTCTTAAGGCAAGAGTTATTGGGAAA CCATGAGAAACAACAGGATCAGGATAGAGACCATAATATGGAGCTGGAATTTGAAGGGAATGGAGGAGTTATGCAGTATG ATTCAGAGCATGAATTTCAGTGTTCCTTTTGGGAGAATCACAAGGTTTCTTGCATTGGTTCTGCTCATAATGATCAAGCA AGTTCCAAAAGGAGAAAGTTGCTTAAAAGGTTGAAGAGATGGGTGGAAGGAAGTGAAAAGGTAAGAGTGAAACCAGAGGA GAAAGGTGAAATTAAGTGTTTTGGTGAGCATTCTGTTTTCTATGGATCACCGAAACCTGAAGTTTCTGCTACTGCAAGGT TTTGTTCTAGTGCTTAAGTCAAAATAGCATGAGCCCCATTTGGATACGAACCAAACAGCCAAATAGCACTGATTAGAGTT TCTCCATTAAAAAGTGCATTAGATAAGTTCTAATATGTGCTTTTTTGGTCCATGTCCAATCTGGCTCAACTAGGTAGTCA TTGATACTATCTAATAAAGAAAATTTGATGTCTGATGTATAAGTTGTGACACTGCATTGTTGAAAAATAAATGATGATGC AATTTCATTTTAAACTTTATATACATTATAATTTGTTTATTGCTGCAA
CDS sequence (LotjaGi5g1v0088800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAGGAAAAGCTTATCCAAAATCTCTTCTTCATCAGAAAATGAGCCTGATTCCCCTGTAACCAATTGTCATGAAGG AAGTAAACAACATGAAGAAAGCTTTCCTAGCCATTCTTCTATGGAAGATGAAGAACCTGTTGTGACTCTGACACGGACAC CGGACACCACACGACACGGATACAGTGACACGGTTAACATCCAAAAAGTGTGTCGTGTCCTTTCTGGGAGCATGGAAATC CTTGACAACCATCCATGTTTGGAACAAGAGATCACTGGCCTAAGAAGCCGAATCGAAAGTCTGCAAATGAGAGAATTGGC CTTAAATTTGCAGTTTGAAGAGTATTGTGAAATGAAAGAGCAAGAATCTCTGCTAATGGAAATCAACAACATGCTGGCAT TGGAGACCGCACGCGTCGAATTCTTGGATAGAGAGGCCTCATCCATAGAGGCAGAAACTATGAGATTGGAGAATTTTGCA GTCCAATACCTGAGGATCATTGAACAGCTTGAGTTTTGGAAATCAGAATATGGGATTCTTCAGAGGAAGGTTCAGAAGCT ACATAGGAAAACAAAGGCGCAATCCCACTTGATAAAGGAGCAGACTTTGAAGATCAAAGAGGAACAAGAAGAAATCTTGA AGAGCCATGATGCCTTGCAAACAAGGATTAGTGTGATTAACAAGTTAGAGGATGAAATCAGAGAGCTAAAAATGGTTTTG GATCAATTGCAGGAGGAGAAGAATGAACTTCAGAAGAAGCTTGACACAGCAGAAGAATTTCCTTCTAAGGATCAGGTTCA TAGAAAACCACTGAAATATTATTTGCAGATTGAATCAGAAGATTACAGCCTGCTTCTGAATGAATTAGAGCAGGTCAAGA AGGAACGCGAAACTGAAGCTGAAGAATTGATTAACTTGAGGAGGATCAATGCTTTCTTAAGGCAAGAGTTATTGGGAAAC CATGAGAAACAACAGGATCAGGATAGAGACCATAATATGGAGCTGGAATTTGAAGGGAATGGAGGAGTTATGCAGTATGA TTCAGAGCATGAATTTCAGTGTTCCTTTTGGGAGAATCACAAGGTTTCTTGCATTGGTTCTGCTCATAATGATCAAGCAA GTTCCAAAAGGAGAAAGTTGCTTAAAAGGTTGAAGAGATGGGTGGAAGGAAGTGAAAAGGTAAGAGTGAAACCAGAGGAG AAAGGTGAAATTAAGTGTTTTGGTGAGCATTCTGTTTTCTATGGATCACCGAAACCTGAAGTTTCTGCTACTGCAAGGTT TTGTTCTAGTGCTTAA
Protein sequence (LotjaGi5g1v0088800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARKSLSKISSSSENEPDSPVTNCHEGSKQHEESFPSHSSMEDEEPVVTLTRTPDTTRHGYSDTVNIQKVCRVLSGSMEI LDNHPCLEQEITGLRSRIESLQMRELALNLQFEEYCEMKEQESLLMEINNMLALETARVEFLDREASSIEAETMRLENFA VQYLRIIEQLEFWKSEYGILQRKVQKLHRKTKAQSHLIKEQTLKIKEEQEEILKSHDALQTRISVINKLEDEIRELKMVL DQLQEEKNELQKKLDTAEEFPSKDQVHRKPLKYYLQIESEDYSLLLNELEQVKKERETEAEELINLRRINAFLRQELLGN HEKQQDQDRDHNMELEFEGNGGVMQYDSEHEFQCSFWENHKVSCIGSAHNDQASSKRRKLLKRLKRWVEGSEKVRVKPEE KGEIKCFGEHSVFYGSPKPEVSATARFCSSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 61 | 61 | - | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| PANTHER | 1 | 431 | 431 | 1.1E-122 | – | |
| PANTHER | 1 | 431 | 431 | 1.1E-122 | ||
| MobiDBLite | 25 | 40 | 16 | - | – | |
| MobiDBLite | 44 | 61 | 18 | - | – | |
| Coils | 226 | 260 | 35 | - | – | |
| Coils | 275 | 309 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0088800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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