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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0089300 |
| Transcript ID | LotjaGi5g1v0089300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Late embryogenesis abundant protein, putative; TAIR: AT2G36640.1 embryonic cell protein 63; Swiss-Prot: sp|Q9SKP0|ECP63_ARATH Late embryogenesis abundant protein ECP63; TrEMBL-Plants: tr|I1L957|I1L957_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0089300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:15493300..15496170) extracted from Lotus japonicus Gifu genome v1.2.
CCTATATATATTCTTCAACCCTCACCTCTTCCTATAATAACAAACAAGCATTCATTCTTAGCAAAATACAAAACAAAAGA AACATATCAATTTCAGTTAGCTAGTGTAAGAAGTTGTGTGTTGTGTTCAGGAGTATTATTTCAATGGCGTCAAGGCAACA ATTCGAGGAGAAACGAGCTGAAGAAGCTGCCAAGGTTGCAGCCAAAGATCTTGAAGAAGTGAACAGAGCAAGAGAGAATG ATTCTGGTGACCAACAGAAGCGTGGTGTGATTGGATCAGTGCTGCAAGCTGTTCAAAACACCTATGAGAATGCAAAGGGA GCTGTGGTTGGCAAGAAGGACAACCACCCTGCAGATATTGATGCTAATGCTAACAGGGGAGAAGTGGTTGAGGTTATTGG TGGCACTGAAGAGGATGTAAAAGGCGAAGTGAGAGACATATCAGCAACCAAATCCTATGATACTTCCTCTGCCACTACTA ACAAAGCAGGTTCCAAGGTTGGGGGGGAGTCCACGGATTTCGCCGCGCAGAAGGCGAAGGAAACGAAGGATGCGACGGTG GAGAAAACCGGTGAGTATGCTGGGTATGCAGGGGAGAAAGCTAAAGAAGCGAAAGACTACACGGCGGAGAAGGCAAAAGA AGGAAAGGACTCTGCTGCTGATGCTGCCAAAAGGGCTGTGGGTTACTTGGGTGACAAGACAGAGGAAACCAAGCAGAAAA CTGCAGAAACTGCTGAGGCTGCAAAGAACAAGACTGTGGAGAACACACAAGCTGCAAAGGACTCTGCTACTGATGCTTGT GAAAGGGCTATTGGTTACATGGGTGACAAGAAAGAGGAAACAAAGCAGAAAACCTCAGAAGCTGCTGAGGCTGCAAAGAA CAAGACTGCAGAGACAACAGAGGCTGCAAAGCACAGAACTTCAGAGGCAATGGACACAACCAAGGTCTCAACTTCAATTT TTTATTTAACTAGTAACATGTCTGCATCTGTTTTTTCTTATAATCTCATAATCAATTCTTAGAAAAGTACTTTTGGCTCA AAATTAAATTTTTTACATTTCTAGGAATTGATTTCGTAAATCAATTGTATGATTTGGAGATAATAATATAAAATCATTCA TGTGACCCTTTTCTAATTTTTGTGGATGTGGATGCAGGAAAATTTGAGTGGAGCTAGTGAAGAAGCAAGGAGGAAGATGG AAGAGCTTAAGCTGCAAGATAAATCTGGGGATCGTAGTGGTAAGGTGGCGATCAAAGTGGAAGAGACTCGACCAGGAAGG GTGGAGAAACGCTGAAAGCATCAGATCAGATGTTTGGGCAGACATTCAATGATGTGGGACGATTGGATGATGATGATGTA GAAGTTAAAACAGCAGGGCTCCTTGATAGAAAGTAATGATCATGTAAAAGCATTCTGCAGCAAGCCAACAACGATGTAAT ATGGGGATGATATAGTGTCATGAAACTTGTTTGTTTACATTTTTGTTAGCTGTTTTTGTAAGTGTTTTGTATGGTCTTTT TGTAATTGGTTTTGGGGTCTCTTATGATTATGGACTGTGAAGAAGACAATAATAAACATTGTTGGCGTTTCTGTAAACAG ATATTAGCAAAAAACAAAAAGCAACAAATTGATTTTCACACTCAAATTTTGTGAACTTGAAAATGGGGAAACTGAGTTCT GTTTGATGCCACTTGGTGTTATAACTGCGTCTTACTGTTTAGCTGTGTGTTCCCCCTGTCATCATCATCTTAAGCTGCCT AGCTCTACTTGATTTGAAATTAATTTTCTCTAAACTCGTGTTCAGATTGAAGTCGACATAAAATGATGATGTAGCTAGGT TTTGTGTAGAAGCACTACAATAAAACTACAATAAAACTTGTTTTTAGGGGTTCATTTAGTATACACAAGAAAATTCTTGT GTAAGATTGCACAAACCTCATTTTGACTCCTTATTATAGGTTACCAGGTAAAATATTGTTTATATACTTAATAACATTTT CATTAAGAACACCAAATTAACCACACACATAAAAATACTTCTTCCTCTTATCTTAAACTTCATCTTCTCCATCTCTCTTG TTCATCAGTCTGAGAATTGCACCATCACAGCAATAATCTTATCTCAAGTTTCCGAGAGATCGACGGTGCGAAGGGTGAAG GAAACAACGCGAAATTCCTCAACCACTGAACCTCGCCATCCTGGATCGCGTCACCTCCACCTCTGCCGCGAGGTCCGCCT CATCACGTTCGTACCCAGCCGCACGCAGCACCTTCATGCCAACCAGCAAGTCGCGGTGGAGGCCTCCGAGTGCCACCATT CTAGCCGTCATCGTCATCGTTCCACCTTTGGTGTTGGTGATTGATTTGGTGATGAAGGCCATGTCTACCCAGATCTGGGT TTCCCCTTTTTGAAACTGGCCTGTACATCCACTCACCCTACAAATCAGAGGAGAGGGAAGGGGAAAAGGAAGGTGCTTTA GAGGGGTTTGACGGCGGCTGGGTTGGGTGAGGGCGAACGGAGCGACACGGTCGAGCGACCATGCAACCTGGATTTTTTCT TTTTTTTTTTATCATTATTTTTGTATCCTTTATCAGAGTGAGAGGAAGAAGATGAATGATTAAAGAAAACTCAAACTTTG TGCCAATTAGTTGAATTTTGTTATGTTTTGTTAGGAGGAATAGGGATGATAAAAATTCATTTGTTTGTCAATCCGCTGAT TTTGTGTGATGTTATTTTGGGGCTATAACTCATTGAGCATTGAAAGTTCAGTATTTTCTTTAACAGTGTTTGTAAATTGA AATCAAAATCATGAGTGGGCTTATATTGTAAATTGGGTAATTTGCATCTGAATTGCATTGATGTTATATCA
CDS sequence (LotjaGi5g1v0089300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTCAAGGCAACAATTCGAGGAGAAACGAGCTGAAGAAGCTGCCAAGGTTGCAGCCAAAGATCTTGAAGAAGTGAA CAGAGCAAGAGAGAATGATTCTGGTGACCAACAGAAGCGTGGTGTGATTGGATCAGTGCTGCAAGCTGTTCAAAACACCT ATGAGAATGCAAAGGGAGCTGTGGTTGGCAAGAAGGACAACCACCCTGCAGATATTGATGCTAATGCTAACAGGGGAGAA GTGGTTGAGGTTATTGGTGGCACTGAAGAGGATGTAAAAGGCGAAGTGAGAGACATATCAGCAACCAAATCCTATGATAC TTCCTCTGCCACTACTAACAAAGCAGGTTCCAAGGTTGGGGGGGAGTCCACGGATTTCGCCGCGCAGAAGGCGAAGGAAA CGAAGGATGCGACGGTGGAGAAAACCGGTGAGTATGCTGGGTATGCAGGGGAGAAAGCTAAAGAAGCGAAAGACTACACG GCGGAGAAGGCAAAAGAAGGAAAGGACTCTGCTGCTGATGCTGCCAAAAGGGCTGTGGGTTACTTGGGTGACAAGACAGA GGAAACCAAGCAGAAAACTGCAGAAACTGCTGAGGCTGCAAAGAACAAGACTGTGGAGAACACACAAGCTGCAAAGGACT CTGCTACTGATGCTTGTGAAAGGGCTATTGGTTACATGGGTGACAAGAAAGAGGAAACAAAGCAGAAAACCTCAGAAGCT GCTGAGGCTGCAAAGAACAAGACTGCAGAGACAACAGAGGCTGCAAAGCACAGAACTTCAGAGGCAATGGACACAACCAA GGAAAATTTGAGTGGAGCTAGTGAAGAAGCAAGGAGGAAGATGGAAGAGCTTAAGCTGCAAGATAAATCTGGGGATCGTA GTGGTAAGGTGGCGATCAAAGTGGAAGAGACTCGACCAGGAAGGGTGGAGAAACGCTGA
Protein sequence (LotjaGi5g1v0089300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRQQFEEKRAEEAAKVAAKDLEEVNRARENDSGDQQKRGVIGSVLQAVQNTYENAKGAVVGKKDNHPADIDANANRGE VVEVIGGTEEDVKGEVRDISATKSYDTSSATTNKAGSKVGGESTDFAAQKAKETKDATVEKTGEYAGYAGEKAKEAKDYT AEKAKEGKDSAADAAKRAVGYLGDKTEETKQKTAETAEAAKNKTVENTQAAKDSATDACERAIGYMGDKKEETKQKTSEA AEAAKNKTAETTEAAKHRTSEAMDTTKENLSGASEEARRKMEELKLQDKSGDRSGKVAIKVEETRPGRVEKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 166 | 166 | 6.9E-52 | – | |
| PANTHER | 1 | 166 | 166 | 6.9E-52 | – | |
| Coils | 9 | 29 | 21 | - | – | |
| MobiDBLite | 23 | 42 | 20 | - | – | |
| MobiDBLite | 23 | 37 | 15 | - | – | |
| MobiDBLite | 103 | 119 | 17 | - | – | |
| MobiDBLite | 103 | 122 | 20 | - | – | |
| PANTHER | 120 | 211 | 92 | 6.9E-52 | – | |
| PANTHER | 120 | 211 | 92 | 6.9E-52 | – | |
| Pfam | 124 | 166 | 43 | 1.3E-12 | ||
| Pfam | 149 | 178 | 30 | 1.2E-6 | ||
| MobiDBLite | 153 | 173 | 21 | - | – | |
| MobiDBLite | 153 | 312 | 160 | - | – | |
| Gene3D | 161 | 306 | 146 | 3.1E-6 | – | |
| MobiDBLite | 180 | 199 | 20 | - | – | |
| MobiDBLite | 200 | 214 | 15 | - | – | |
| PANTHER | 200 | 310 | 111 | 6.9E-52 | – | |
| PANTHER | 200 | 310 | 111 | 6.9E-52 | – | |
| MobiDBLite | 223 | 243 | 21 | - | – | |
| MobiDBLite | 249 | 264 | 16 | - | – | |
| Coils | 263 | 287 | 25 | - | – | |
| MobiDBLite | 271 | 312 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0089300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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