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LotjaGi5g1v0090200.1

Overview

Field Value
Gene ID LotjaGi5g1v0090200
Transcript ID LotjaGi5g1v0090200.1
Lotus japonicus genome version Gifu v1.2
Description 3-deoxy-D-manno-octulosonic-acid transferase; TAIR: AT5G03770.1 KDO transferase A; Swiss-Prot: sp|Q8VZA5|KDTA_ARATH Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial; TrEMBL-Plants: tr|A0A151U3D0|A0A151U3D0_CAJCA 3-deoxy-D-manno-octulosonic-acid transferase; Found in the gene: LotjaGi5g1v0090200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:15682500..15688060) extracted from Lotus japonicus Gifu genome v1.2.

CCCAATCTTAATGCTTTGTTTTTGTTAGAGGCCCAATCGAGTATGACTTTCATCAGGCCCATATGAATATGTACGTCTTC GGGCTTTCCGGCGGAATGCAACGCCACGAGGAGGAGGAGGATGGAGAAGGGGTTGGTGGCGTACAACGTATACAGAGCCA TAAGCTGCGGTTTGTCGCCGTTAATCCGCCTCCACCTGCGGTGGCGCAGGTTCCGCGGCCTGGAGCATCCACACCGGTGG CCGGAGCGTCTGGGCCATCCCTCTCAGCCTCAGCCTCGCCGGCCAGGTCCACTCATCTGGTTCCACGCCGTCTCATTGGG CGAAGGGATGATCGCGCTTCCTGTCATCAAACAATGCATTCAGAGAATGCCTCACTTGAACGTGCTCTTCACCATCACCA CACTCTCTGCATTGTATAAACACACTCACTCTGCTCCCATTTTGTGGTTTTTATTTATTTTGAATGCAAATAAATAATGT CTCAAGCATGCACCATTTCAAATAACATCAATTTGCTTTTTGAATACTTCTAGCTGCATCTTTGTATTTACTTTTGAATT TTTATAGCATGAGAATATCATAATATTAAATAAATCATAGTATTGTATTGTAATCAGGGTTGTTAATGGAGCGTAGCGTA GCGGCAAGCCCAAAAAACGCTATTGCGGCGCTATAGCAGCAAATAGCGGGGAATAGTGGAGTAGCGGTGAACCCCCAGGG CGCTACGCTATTGCGTGCTATTAACAAGCCTGATTGTAATTATAAGAACTCAGACTAACTGTTAAAATGTAGGTACTTTG TTACTTTGTTTTGATTCATGATTTCTGTATTTATATTTATTATCTACTTAGTTTTTGTGTTGTGTTATATGCACTTCATG TCTTAATTTTTTTAATCTCTTGTAGAGGTCTCATGATGTATATGTACTTCTATGTCTAAACTGTGGAAATTTGTATATCA GAAAATGTCTTCTAACTTCTAAGTGATCATGTTTTTCCAAATTCTGGAGATGGGTGGTTGCTTCTTTTTGGAGATCAATA ATATCCTTTAATTTGAGTTTTTGAGAAGAGAAACAGGCATTCTTGAACTGATTTATGAGGTTATTTTTTGGTGTGATGCA GTGAAGTATTAAGCAAGCGGCTTCCAAGTGAAATCATTTTACAGGTCGGAGTGCTAACTTAGATTCAGTAGTTTCTTCAT TTACTTGCATCTTTTCTCAATGAAGTTAAATGACTGTAGAGTGTAGATAACTGTTGACTATGCTGAATCTAATAATTCAT GAGAATAACTTGTAGCTTGAAGGGTGATATGTTCTTGTTTCTTATGATGTCATATTTTCTCATCAATCAATTGGGATGAT AAGATGCTGGCCTTTCATTTCTTAATTTTTGTCAACACACATAAGCAATAATCTAGCTTTAGAGTTAATTCATGACAGAG ATTCATAGCGTCATCTGATCTATTAATCCAATCTCACCTAGTATAAGAAGACTTGGTTGTTGTTGTTATATATTAGCAAT AATCAAACTCTTTTCCGCAATAATTTTATTTATGAAAATAAAGAGAACAGTATGCTTTGTTTCTCAAAGAAATTTATTTC TGGAAAAGTTGTTATGAACTCTATTTTTGCAATGTTTTTAACTGATTTCTATGAGCTTAAGGATGTAAATCTGTCTTCAG AATTAAGGATCAAACAGACTCTTTACTGAGTTGACTTTTGAGTGCTGGCTTGCTTATTATTTACTACTTCATCAGTAAAT TTCATGTTGTCTTCATCTTTCAAATTTGGCAGTTTTCTCCAGTTGATACACCTGCTTCCATCCGCTCTTTTCTGCATTAT TGGAAGCCGAATGCTATTGTGCTAATGGAAAGTGAACTCTGGCCAAATCTTATCATGGATGCTTCAAAAAATGGTGTAAG TTATTCTTTCTCATTAGTTTGTGGACCACATCTATAGAGCACTAAGTGATGGAAGACAAAATAATTGAATGTTTAGTCCA TGCATCTAGAATTGGAGTCAATAACCTACTTCATAAATGATATTTAAACAGTAGTGTAGACCAACTTTCCGTTTTAAACA AACATAGAGCCCAATTAATTTCTTTGCTCATACATCCGCTTCACTTGTGTATGTTTCTTGTGCATCATATCAAATAGTTT CACTGATACTTACATATTATATCCATTTTACTCTTATCAGATAACTCTGGCACTGTTAAATGCTCGGATTTCTGAGAAAT CCTTTAAAGTGTGGTCAGGACCAATGCTACTTCCATTAATTTCGTTGATGTTATCCAAATTTTCCTTGATTGTTCCGTTG GTATGTACTCCTAGATCTTTTTAATTGTTCAAGTCATTCATGTCTTTTATTATGCAACCGTTGACCTTTTTGAACTTACA GAGTACAGAGCAGGGTATCCGGTTTCAGCTACTGCAAGCCCCTCCATATATTATAAACTTTTCTGGTGATCTTAAGTATG GTATGTCATAAATATCTTGATCCTAATTAGCTAAAATTGAATGTATGTGAAAAGTTGATGACTTCTGTTCTGCTACACAA CATCATTGTATTCTTTTTCTCTCTTGAGTTTGATTATTAAAATAAAGCGAGTGGCATAGTTGACCTCAATTTTATTACTG ATATGGTTATAGCAAAGCTTTTTTCCTACTAGTTGGGATCAGCTATATGAATCAAACTTCCCCATAATGTCCTATCATGA ATCAAGTCTAATGATAGATCATTAAAATCTAAATCGCTCTTAATGGTTTGATTTATAGTTTTCCTCGGTTTCTCTTTACC TATAACTATTAGACTACCCTCTTTACTGGTGCTTCAATGAGTCTTTTCCACACATATCCATATCATCTAAAACGAGACTC TATCATCTTTTGAACAAAGGGAGCTACCCCAACCTTCTCTCTAATATTTCATTCCTAATCCTATGTTGTATTGTGTAATC ACTAATCCATTGTAACATTCTCATGTCTTCAATACTAATCTTTTTTCTTGTTGGCTCGTTACCGATCAACATTTAACCTT ATACAACATTTCAAGTTTTACAGCTTAGTAGTAAAAAAATTCTGTAAGTATGTGTGATACGTTCAGAAACAAAATTTATG TTGGTTCTTCTTAGACTGTTGTCCTTTTGGAGTCTGTACTGATCCTTTCTTATCATTCTTTTCGTTCAGTTATGGAGGAC ACTGGAGTTAATGAAAGAGGCAGAAAAAACATAGATAATCTGAGACTACAGCTTTCGGACAAGCAAGTTTGGATGGCTTC TTCCATTCATAGGGGAGAAGAAGAAAGTTAGTGCCATCTTTTATTACCTCTGGCATTATGCTATAAATACTTGCTTGTTT CACAGAGTGTGCTGAAACACCTGATCTTTTGGGTTAACATAAAAAAGGAGAGGGGCATTATTAATTTCCATGAAATTTGC TTTGGGTCAGTAATGAAGCCAATATTTAACTGTTTGCACTTTGCACACATTTAGCTAAGACTGCATTTTGACATCATTGC AGCTACACAATTTTGATTGTTTGCACATATTTTGTTACCATAGTCATTATATCAAGTTGACTGTTTGCTTTGAGGTCAGT AAAGATGCCAACACAAATTTCTTACATATTACTAGCCATTTACTTTGAGGAACATGATTGGTTTTTACTCTCATCTGATT TGCTTTCTCTTCAGTAATACTAGGAGTTCACAATGTCCTTATGCAGCTGCAACCGAACATAATGACTATTATTGTCCCTC GGCATCCACAACAAGGACGAGAGATTGCCAAAGCAAGTTTTGATCCCATATTTTTTCCTTTCAAAACATGTTTTAACTGT CTCTATCTCTGGTTCTCTCCATTCAATTCAGATGTCATCATGATATGCATTCTCAGTCACGCTGAATAGAATTCAAGAGC CCTTTTTCTCCATCTATTGACTAATAAAAATATGATTTTTAGCTATTGTATAATTAATGACATCAAAAGTTCTAAGGGAT TATTATATTTCTAGATCATAGTGTTTGGATATGCTCATATTAAATGAAATTCAATCAGCAAATATCCTCTAGTGTCATTT GCATACGACAGAAATGATGCTCATACAAGTCCCTGTCATTTCTAGTAACCTTTTTCTTTACCACCTCCCAAATTCATTAT GCGTCTACTTGATGCTGTGCAGAAATTCGAGGAAGAAGGACAAAATGTAGTTTTGAGGTCTCAACATGAGAAGTTCAAGC CAGGAACAAATACTTATGTGGTGGACACTTTGGGTAAAATATGTTTTCTTTTCACTGATATGAAAATCTCTCATGTGTAA ACAATGTGCTGAGAATATAGGCCATGCGATTTTTAGAGCTGCTGAATTTGTACCACAATATTTCCCGTCATTCTCCATCT TCCTCATCACTTCAGTGTTTTATACTAGCCAAGAACATATTTAACTCAGATTTACTCAAATGAGGGATTTGTGAGGTCTA CTGAGTCCTGAAGTTGGCAGTTTTATTTGCAAATGTGCGACTTCACTCTGAACTTTATTTAATATGGAACCTGGGCGGTT GGAATTGTCAGGTTTGACATATACTGTTATCCACTTTCTTTGGCAGGTGAATTAAGACACTTGTACACTTTAACACCAAT AGCTGTGATTGGTGGTTCATTCCTCCCAGGTTTATCTGGCCATAATATCTCAGAAGCTGCTGCAGCCGGCTGTGCTGTTT TAACAGGTGCATGTTGGACAACCTTTAGGTAGCTTTTAAATCTCAAGATGATATTTTCGTGTCTTGAACTCATAATTGAT TTCAGGTTGTCACGTTGGGCATTTCTCCCACATGGTAACGGGAATGCAACGATCAAATCCTTTGTCAGTCCTTCAGGTGT GAAAGACATCTCATTTGCTAATCGAAATTTTTCTACAGTGTGAGTGCTCTTAAACTGTTCTCTATGGTCGCTGACTTGTA GGTTTCTGGAAAGCAAGAGCTTGAAAAAGCTCTCGTTGAGCTCTTCACAAATACAACTCTTCTGGAAGCACGTCGTAGAG CTGCAAAGGAAGCATTTTGTAGTTTGTCTAGTGACATAGTTGCAAATGTCTGTATTTTGCTAAATTTTCATATTTTTAGT AGATTGTCTGTAGAGGAAACAAAGATGAGAAATGAAGTTTCATAATATTGCAACAATTTCTCATTATATTTCCTTTCAAA GCTTGAAGAGTGTAGATGCCATATGCCCGCATTTATGCTTCAATCAAGAGCATTGTTACTTGTTAGTAAACTATTTACTT TGGCAGCAACTGTGCTAAATTTGTGTTTCAAAACGGAGTTTAGAAGCTGAAGAACGATCATCTCTAACTTGGGCAATTAA GTGCAGATGTATAAGGTTTTTCTCATAACTAATGGAATTCTTGTATTTACTGGAAGCCCTGATGGTACCCTTAAACAGTG ATTCCCTATTAGATTGGTCCTGTAAGTATGTTTAGTGCATTTGAATTTCATGAACTGGTGCTTGAGAATTGCTGATTGCA TTATCTGTCACGGAGTCACCCCATAATCTTGCAGAATTGAC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0090200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAGGGGTTGGTGGCGTACAACGTATACAGAGCCATAAGCTGCGGTTTGTCGCCGTTAATCCGCCTCCACCTGCG GTGGCGCAGGTTCCGCGGCCTGGAGCATCCACACCGGTGGCCGGAGCGTCTGGGCCATCCCTCTCAGCCTCAGCCTCGCC GGCCAGGTCCACTCATCTGGTTCCACGCCGTCTCATTGGGCGAAGGGATGATCGCGCTTCCTGTCATCAAACAATGCATT CAGAGAATGCCTCACTTGAACGTGCTCTTCACCATCACCACACTCTCTGCATTTGAAGTATTAAGCAAGCGGCTTCCAAG TGAAATCATTTTACAGTTTTCTCCAGTTGATACACCTGCTTCCATCCGCTCTTTTCTGCATTATTGGAAGCCGAATGCTA TTGTGCTAATGGAAAGTGAACTCTGGCCAAATCTTATCATGGATGCTTCAAAAAATGGTATAACTCTGGCACTGTTAAAT GCTCGGATTTCTGAGAAATCCTTTAAAGTGTGGTCAGGACCAATGCTACTTCCATTAATTTCGTTGATGTTATCCAAATT TTCCTTGATTGTTCCGTTGAGTACAGAGCAGGGTATCCGGTTTCAGCTACTGCAAGCCCCTCCATATATTATAAACTTTT CTGGTGATCTTAAGTATGTTATGGAGGACACTGGAGTTAATGAAAGAGGCAGAAAAAACATAGATAATCTGAGACTACAG CTTTCGGACAAGCAAGTTTGGATGGCTTCTTCCATTCATAGGGGAGAAGAAGAAATAATACTAGGAGTTCACAATGTCCT TATGCAGCTGCAACCGAACATAATGACTATTATTGTCCCTCGGCATCCACAACAAGGACGAGAGATTGCCAAAAAATTCG AGGAAGAAGGACAAAATGTAGTTTTGAGGTCTCAACATGAGAAGTTCAAGCCAGGAACAAATACTTATGTGGTGGACACT TTGGGTGAATTAAGACACTTGTACACTTTAACACCAATAGCTGTGATTGGTGGTTCATTCCTCCCAGGTTTATCTGGCCA TAATATCTCAGAAGCTGCTGCAGCCGGCTGTGCTGTTTTAACAGGTTGTCACGTTGGGCATTTCTCCCACATGGTAACGG GAATGCAACGATCAAATCCTTTGTCAGTCCTTCAGGTTTCTGGAAAGCAAGAGCTTGAAAAAGCTCTCGTTGAGCTCTTC ACAAATACAACTCTTCTGGAAGCACGTCGTAGAGCTGCAAAGGAAGCATTTTGTAGTTTGTCTAGTGACATAGTTGCAAA TGTCTGTATTTTGCTAAATTTTCATATTTTTAGTAGATTGTCTGTAGAGGAAACAAAGATGAGAAATGAAGTTTCATAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0090200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKGLVAYNVYRAISCGLSPLIRLHLRWRRFRGLEHPHRWPERLGHPSQPQPRRPGPLIWFHAVSLGEGMIALPVIKQCI QRMPHLNVLFTITTLSAFEVLSKRLPSEIILQFSPVDTPASIRSFLHYWKPNAIVLMESELWPNLIMDASKNGITLALLN ARISEKSFKVWSGPMLLPLISLMLSKFSLIVPLSTEQGIRFQLLQAPPYIINFSGDLKYVMEDTGVNERGRKNIDNLRLQ LSDKQVWMASSIHRGEEEIILGVHNVLMQLQPNIMTIIVPRHPQQGREIAKKFEEEGQNVVLRSQHEKFKPGTNTYVVDT LGELRHLYTLTPIAVIGGSFLPGLSGHNISEAAAAGCAVLTGCHVGHFSHMVTGMQRSNPLSVLQVSGKQELEKALVELF TNTTLLEARRRAAKEAFCSLSSDIVANVCILLNFHIFSRLSVEETKMRNEVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR42755
7 440 434 8.5E-175
IPR039901
Pfam
PF04413
38 219 182 2.0E-50
IPR007507
Gene3D
G3DSA:3.40.50.11720
41 220 180 2.6E-34
IPR038107
Gene3D
G3DSA:3.40.50.2000
230 417 188 2.4E-51 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016740
Molecular function Transferase activity Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0090200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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