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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0097000 |
| Transcript ID | LotjaGi5g1v0097000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G23880.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880; TrEMBL-Plants: tr|K7L8S8|K7L8S8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0097000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17172195..17174711) extracted from Lotus japonicus Gifu genome v1.2.
TAGAACACACACACACACACACTCTCTCTCTCTCTCTCTCTCTGCTCTACTGAAGCTTTGTAGCAGCATGGAGAAGAAGG AAACAGAGAAGAAGAAGAAGAAACCCAACCTCAACCTCACCGAGTTGATTCCTGAAATGATTGATCTTTCTCATGAGCAT GCGAACAAGAGGATGATGATCAACGACAAAGAGAACCAGAACACTGTCTCTCTCCCTGACGATTTGATTCCATTGATTCT GGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTCGTGGCTGTCTCTGATTTCAAATACCCAAT TTGCAAAATCACATTTTGATCTAGCGGCTGCACCCACCCACCGTCTTCTTCTCAAAAGAATCAATGTTGGTTCTGAAATT CAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCTACAGTGCCCCCTT TTATCTGGCTTTAGGTTCTTGCAGAGGGCTTATTCTGTTAGCAAAAATGATGGGTCCATCAGCTGGTGATCTCATTGTGT GGAACCCTTCAAATAGTTTCCACAGAGAAATTCAAGTAACCTATGGCTATGATGACTGGGATTCATGGTATGACCCATCA TCAACCCGTGTCCGCCAAGGAATTCCTCCTTATGTTGGTTGTTTTTTGACTGGTTTTCTATATGGTTTTGGATATGATCA GTCCAGAGATGACTATTTGCTTGTTTTGTTACGATTTGGTAGACATGAACCTCAACCTCAAGCATTTGAGCATAGCCGTG AAGGCCTTCTTGTTTGTATGACAACTGGTGGACCTGAAGTGACTACATTTTCGCGGCCTCGGGTTGAGGTTTTGTCTGTG AAAACTAATGTGCCCTCCTTCATTTATGGCGAAGAGTTTGAATATGTGGAGCTCGGAAGTGCGTCCGCATCTGGTTTGTT CTTGAATAAGTCCCTACATTGGTTGGTCAAATCCAAGGCTACAGGGCTTCATGTAATCATTGCCTTTGATTTGGTTGAGA GGAGTTTATTCGAGATTCCTTTGACACCTGATTTGACACAGGAATTGGCAACACTTAAAATTTATCATTTGAGGGTACTG GGAGGATGTCTTGGTCTGTGTTGTAATGGTGCTGGTGTTGACCATGGAATGACTGAGATATGGGTCATGAAAGAGTATAG AGTGCAGTCTTCTTGGACTAGATATTTTGTTCTGCCTGAGTATTACTTTTTACCCATATGCTTCATTGAAGGTGGTGGTG TTTTTGGATCAAATAACAGTGGAAGATTTGAGAAATTTGATGATAACGGAGAACTGCTGGAGGATCACACATATGGACAA GAGAACGAAGATGTTTTTGGGTATTTTGACATGTACAAGGAGACCCTACTAACACTCCCTGGTGAACTATCTTGACCTTG AGGAAGCACATGAAGACAACTGTCATTACCTAGAAACATGGAAAAAATAGTAAGCAATGTTCTCCAACCCTTTTTATTTC TTTGTTCTAATTCATCTTGCATTATGAAAAACTAAAAGCTATATGCAGAATACCTAATACATGAAAATGATACCTTAAAC CCATTGTTGTACTCTCCCTTTCTAAAGAATAATTCATTTTTGTTAAAAAATGATAATTAAAATTGCAAGGAAAGATGAGA TTTGGTGTTGGATTGAATCCAATAAAAAATATTTGATGCCTTGAATACTAGAAACATTAAAGGCTATTTGCCATATGAAC TCGTGTTTCTCGCAAGCCACAAAGTAGCTATAGAATATTTTATACATTTTCCTTGATGTCATACTCCTAGTTTTTCTTCA AATGACGATACTGCGTTAGAGAATGTCATATGTATCATCCGATATTAAACAATCTAGTGTGAATGCAGCACTAGTGTATG TTTAAGTGGGGGTTTGGATTTCAGTAAAACTGGAGTTTGAAGCATACTTTCATATTTAGTTATGCTTCGAAGTAGATTTT ATCAAACTTTAGTTGTAGTAAGTGCATGTTAGTTAGCATCTTTTTTTTTCATTTTTTTTCTAGGTACTGTTATTGTGTTT ACACTCTATTTCTCTTACCCTCTTTTACATGGTTTTCAAGTTATTTACATAGGGTGCTTTTTCTGCAAGCTATTGTTCTC TTGCATCCATTGGTGTTGAAGTTGTGAAGATATTGTTGATCTTAACCATATGGGAGCTAAAAGATGGTGATGGAGTAATG GGGTGAAATTGTTGAAACTAATCAAGTTGTGATCTCCATTGTTCTTGCATGTAATCAATTTAACCGTTTCATCACTCTGA TTTAGAGTTGATTAGGTTTTCTATGATAGTTCCTGACATACTTTGTAGTTTCTGTCAGTATCTCGTATTTTCTGTTATTC AATTTCTAAAATAAGGAAAACTTTCATTGTACTAAACCCCTTTAGATAAGTGGTGTAGAATCCTTTGTGTATTTGATAAA TTTCTAATTTCTCAAGAGAGTTTGGAGCAAAATGGCC
CDS sequence (LotjaGi5g1v0097000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGAAGGAAACAGAGAAGAAGAAGAAGAAACCCAACCTCAACCTCACCGAGTTGATTCCTGAAATGATTGATCT TTCTCATGAGCATGCGAACAAGAGGATGATGATCAACGACAAAGAGAACCAGAACACTGTCTCTCTCCCTGACGATTTGA TTCCATTGATTCTGGTGAGGTTACCTGTTCGATCTCTCCTCCGCTTCAAATCGGTGTGTAAGTCGTGGCTGTCTCTGATT TCAAATACCCAATTTGCAAAATCACATTTTGATCTAGCGGCTGCACCCACCCACCGTCTTCTTCTCAAAAGAATCAATGT TGGTTCTGAAATTCAATCATTGGATTTTGAAGCATCGCTTCGCGACGATTCTGCTGTGGTAAACCTCAAATTCCCACCCT ACAGTGCCCCCTTTTATCTGGCTTTAGGTTCTTGCAGAGGGCTTATTCTGTTAGCAAAAATGATGGGTCCATCAGCTGGT GATCTCATTGTGTGGAACCCTTCAAATAGTTTCCACAGAGAAATTCAAGTAACCTATGGCTATGATGACTGGGATTCATG GTATGACCCATCATCAACCCGTGTCCGCCAAGGAATTCCTCCTTATGTTGGTTGTTTTTTGACTGGTTTTCTATATGGTT TTGGATATGATCAGTCCAGAGATGACTATTTGCTTGTTTTGTTACGATTTGGTAGACATGAACCTCAACCTCAAGCATTT GAGCATAGCCGTGAAGGCCTTCTTGTTTGTATGACAACTGGTGGACCTGAAGTGACTACATTTTCGCGGCCTCGGGTTGA GGTTTTGTCTGTGAAAACTAATGTGCCCTCCTTCATTTATGGCGAAGAGTTTGAATATGTGGAGCTCGGAAGTGCGTCCG CATCTGGTTTGTTCTTGAATAAGTCCCTACATTGGTTGGTCAAATCCAAGGCTACAGGGCTTCATGTAATCATTGCCTTT GATTTGGTTGAGAGGAGTTTATTCGAGATTCCTTTGACACCTGATTTGACACAGGAATTGGCAACACTTAAAATTTATCA TTTGAGGGTACTGGGAGGATGTCTTGGTCTGTGTTGTAATGGTGCTGGTGTTGACCATGGAATGACTGAGATATGGGTCA TGAAAGAGTATAGAGTGCAGTCTTCTTGGACTAGATATTTTGTTCTGCCTGAGTATTACTTTTTACCCATATGCTTCATT GAAGGTGGTGGTGTTTTTGGATCAAATAACAGTGGAAGATTTGAGAAATTTGATGATAACGGAGAACTGCTGGAGGATCA CACATATGGACAAGAGAACGAAGATGTTTTTGGGTATTTTGACATGTACAAGGAGACCCTACTAACACTCCCTGGTGAAC TATCTTGA
Protein sequence (LotjaGi5g1v0097000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKKETEKKKKKPNLNLTELIPEMIDLSHEHANKRMMINDKENQNTVSLPDDLIPLILVRLPVRSLLRFKSVCKSWLSLI SNTQFAKSHFDLAAAPTHRLLLKRINVGSEIQSLDFEASLRDDSAVVNLKFPPYSAPFYLALGSCRGLILLAKMMGPSAG DLIVWNPSNSFHREIQVTYGYDDWDSWYDPSSTRVRQGIPPYVGCFLTGFLYGFGYDQSRDDYLLVLLRFGRHEPQPQAF EHSREGLLVCMTTGGPEVTTFSRPRVEVLSVKTNVPSFIYGEEFEYVELGSASASGLFLNKSLHWLVKSKATGLHVIIAF DLVERSLFEIPLTPDLTQELATLKIYHLRVLGGCLGLCCNGAGVDHGMTEIWVMKEYRVQSSWTRYFVLPEYYFLPICFI EGGGVFGSNNSGRFEKFDDNGELLEDHTYGQENEDVFGYFDMYKETLLTLPGELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 31 | 128 | 98 | 1.4E-7 | – | |
| PANTHER | 41 | 444 | 404 | 3.5E-77 | – | |
| PANTHER | 41 | 444 | 404 | 3.5E-77 | – | |
| ProSiteProfiles | 43 | 89 | 47 | 10.451 | ||
| SUPERFAMILY | 47 | 107 | 61 | 3.92E-13 | ||
| Pfam | 48 | 82 | 35 | 8.8E-7 | ||
| SMART | 49 | 89 | 41 | 1.2E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0097000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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