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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0099400 |
| Transcript ID | LotjaGi5g1v0099400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox-leucine zipper family protein; TAIR: AT4G04890.1 protodermal factor 2; Swiss-Prot: sp|Q93V99|PDF2_ARATH Homeobox-leucine zipper protein PROTODERMAL FACTOR 2; TrEMBL-Plants: tr|V7CIR7|V7CIR7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0099400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:17870131..17873177) extracted from Lotus japonicus Gifu genome v1.2.
CTTGAAAAGATAGCAAAAATTGCAAAAAATCTTGCCAAGTCGTCCTTCTCTAACCTGCCACCATCGTCGCCGCTTCACAC ATCAATGCCTTCGCACTCTCTTGATGTTGTTAGCTATATTCCGCAATCAAGCATGGTAGAACAAGTTCATGGTGGTAGCA ATGAGCCTCAAATGTCAACTATCAACTCTACTTTTACAGAATCTGAGAAAACTTGCATTGTTAAGCTTGCGGTTGGAGCA ATGGAGGAATTTACCAAGATGGCTCATGTTGGAGCGCCTTTATGGATCCCTACATTCCACACTGAGATTCTAAATCAACA AGAATATGTTAGGGTTTTCCCTGCGTTACTTGGTCCGAAACCCTTAGGGTTTAGATCTGAAGCTTCAAGGGAAACTATGA TTGTTATCATGAATCCAAGTACCCTCATTGAGATACTTATGAATGTGGTGAGTGATGTTAATATAATGTTCCCAAAGATT AATTTTCACATTTAAATATATATTTACCATTTTGTTGACAATTATTTTCAGAATCAATGGTCAGCTATGTTTCACAGTAT TGTTTCAAGTGCAACAACAACTGAAATCCTATCAATTGGAGTGCCAGGAAACTATGATGGAGCCTTGATAGTGGTATGCA AAGTTTTTCCACTTTTCCCCATCCTCACATATCATGAGAACTGATTAATAGCGTGTTTCAATGTATTTCTCTTTTCTCAT CATCAATTTCAATTGATTCTGAATTATGAAATTTTTAAACATGGTGGCATTTCACATATGTTTTTAGATCTCGGCAAAGT TTCAAGTGTTGTCACATCTTGTGCCAACTCGTGACAACTATTTCTTAAGATATTGTAAGCTTCACCCTGATGGGGCATGG GCGGTGGTTGATATTTCGTTGGACTATATGCGACCTGTTGCTACCTCAAAATGCAGAAGGCGACCCTCTGGTTGTATGAT TCAAGAATTGACAAATGGTTTCTCAAAGGTGTTATTTAAAATGGAACTAATTCATCAATTAATTGTCCACCACATTCATG GTTCATAATTGATATTCAAGTATTGAAGCTAACTATTTTTTTTCTTCAGGTTACATGGATTGAGCATGTAGAAGTTGAAG ACAACGTGGTGCATGATCTCTTCATAAATCTAGTAAATTCTGGTTTTGCCTTTGGAGCTAGACGGTGGATAGAAACTTTA GAAAGACAGTGCAAACGTATTGCTTGCACAATAACATCAAACATACCACCAGATAACTATAGTGGTATATATCTTTCACT ATTAAAATCTTGTTAGATCAAAGTTTTATAAAGTCTTTCACTTAATTGTGAATTACATTAGTTTTATGCATATGATATAG GTATAACTCCTGAAGGAAGAAAAAGCTTGATGAAATTTGCAGAAAAAATTATGCAAAGCTATTGCAACTATGTTGGTGCT TCCCCACCACCACCATATATTTGGACAGTCCACACAACACCACCAACTGGTGCTAATGATGTGAGAGTCATGACCAGAAA CCACACTGACGCATCAGGCGCAATTATCGGTCTCTTTATTAGTGTTGCAACTTCTTTCTCGCTTCCGGTTCCTTCCAAGA GCCTCTTTGATTTTCTTCAAAATGTGACCTCAAGAAACCAGGTATATACAATATTTCAACTAATTCTTACCTAATAGCAG TAGTAATATAAATATATATTTGCTATGAATTCACACATTGGAGTGTGGAGTCTCACCTTGATTAAAAATGAGTAAAGTGA AAACATTATGTGACATGTATATCCAACATTTAAAATTTTGGGTAAAATGTAATGTCTTGTTTGTTATATTGATGATGATT TCCATGGCCCATTAAAACTTTTGAGGCTCTCACTATCCACTTAGCCAGCTTAGAAAGTTGCAGTAATTGTTGATTCCATA GTGGTTGATTATTGACCTTAATTTTGTTACTACAGTTTATCAATTAAAGTTATTTTTTTTTGAATTTGCAGTGGGATATC CAGACCAACGGTTTTGTAGTTCAAGAACTGGCACACATAACGAATGGCCATGCTCCTAGTGACTTCGTCTCTTTACTTAA GGCCAATGTAAGTTGGTGATTTCGTTTAGCATTTGGTACATCTAAGATATATCTTATAAAAATAGATAACCTAACAACAT TTTTGGTAAATGATATTGTAGTGTGCAAATTCCAGCGAAAAAACCAAGATCATAGTTCAAGAGGTTTGCACTGACTCTAC AGGATCATACATGGTGTATGCTCCTATTGAAATTGATACCCTGAATTTAGTCTTGAGTGGCTGCAATCCAGATTATGGTA CCATACAGCCCTCTGGCTTTGCCATTCTTCCTGATGGGCTTGGGCTGAGTGGTGGGTCTGTAACTGATGTTGCATCTGGA GGGTGTTTATGCACATTTGCATATCACACATTGATTGAAGGAAATATAACAGAGTTTCCTCCTGACATGGTAACCTATTT GTGCAATTTTATGAAGTGCACAATTGAAAGAATCCAAGCTGCAATGATGCGTGTGAGCACCTGATTGCAAAAAGTAAGCA AATTAAACATTTTATATTAATTAGAATTAATTTACACAATACTTAAGGAGCAATTAATGATATGTACTGGCTTGAAGTTT AACTAAAATTTATTTTTATGCTAAATTGAATCTTCAGAGGAATATTTTTTAATAAAGGGTCTTAAACTTTATGCAGTTAG TAGACAAAGATGTGAAGAATTCACAACATGAATGGTGTCACCTGCATTAGTGTTCAGAAGCAGAGAAGAAAGTCAATGAA CTCACAAAAAGAAGCATCATAGATTCGAGCATTAACTTTTTCCAATGAAGAAGACAAGAGTTGGAACATGCTTGATTTAT ACATCAATGTTTTAGCTTCTACTTAATTATTGAATAAATATTATATTGGTTTTTGAGGCTTGAAGAAACTTTCTCCAAGT TCCTTTTAATGTTGAGTTCATAAGTTGTAAACTTTGAGCATTTGGGTTTTCTTTTTAAACTTTACTATATTTGGTGTGTT TCACTAA
CDS sequence (LotjaGi5g1v0099400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTTCGCACTCTCTTGATGTTGTTAGCTATATTCCGCAATCAAGCATGGTAGAACAAGTTCATGGTGGTAGCAATGA GCCTCAAATGTCAACTATCAACTCTACTTTTACAGAATCTGAGAAAACTTGCATTGTTAAGCTTGCGGTTGGAGCAATGG AGGAATTTACCAAGATGGCTCATGTTGGAGCGCCTTTATGGATCCCTACATTCCACACTGAGATTCTAAATCAACAAGAA TATGTTAGGGTTTTCCCTGCGTTACTTGGTCCGAAACCCTTAGGGTTTAGATCTGAAGCTTCAAGGGAAACTATGATTGT TATCATGAATCCAAGTACCCTCATTGAGATACTTATGAATGTGAATCAATGGTCAGCTATGTTTCACAGTATTGTTTCAA GTGCAACAACAACTGAAATCCTATCAATTGGAGTGCCAGGAAACTATGATGGAGCCTTGATAGTGATCTCGGCAAAGTTT CAAGTGTTGTCACATCTTGTGCCAACTCGTGACAACTATTTCTTAAGATATTGTAAGCTTCACCCTGATGGGGCATGGGC GGTGGTTGATATTTCGTTGGACTATATGCGACCTGTTGCTACCTCAAAATGCAGAAGGCGACCCTCTGGTTGTATGATTC AAGAATTGACAAATGGTTTCTCAAAGGTTACATGGATTGAGCATGTAGAAGTTGAAGACAACGTGGTGCATGATCTCTTC ATAAATCTAGTAAATTCTGGTTTTGCCTTTGGAGCTAGACGGTGGATAGAAACTTTAGAAAGACAGTGCAAACGTATTGC TTGCACAATAACATCAAACATACCACCAGATAACTATAGTGGTATAACTCCTGAAGGAAGAAAAAGCTTGATGAAATTTG CAGAAAAAATTATGCAAAGCTATTGCAACTATGTTGGTGCTTCCCCACCACCACCATATATTTGGACAGTCCACACAACA CCACCAACTGGTGCTAATGATGTGAGAGTCATGACCAGAAACCACACTGACGCATCAGGCGCAATTATCGGTCTCTTTAT TAGTGTTGCAACTTCTTTCTCGCTTCCGGTTCCTTCCAAGAGCCTCTTTGATTTTCTTCAAAATGTGACCTCAAGAAACC AGTGGGATATCCAGACCAACGGTTTTGTAGTTCAAGAACTGGCACACATAACGAATGGCCATGCTCCTAGTGACTTCGTC TCTTTACTTAAGGCCAATTGTGCAAATTCCAGCGAAAAAACCAAGATCATAGTTCAAGAGGTTTGCACTGACTCTACAGG ATCATACATGGTGTATGCTCCTATTGAAATTGATACCCTGAATTTAGTCTTGAGTGGCTGCAATCCAGATTATGGTACCA TACAGCCCTCTGGCTTTGCCATTCTTCCTGATGGGCTTGGGCTGAGTGGTGGGTCTGTAACTGATGTTGCATCTGGAGGG TGTTTATGCACATTTGCATATCACACATTGATTGAAGGAAATATAACAGAGTTTCCTCCTGACATGGTAACCTATTTGTG CAATTTTATGAAGTGCACAATTGAAAGAATCCAAGCTGCAATGATGCGTGTGAGCACCTGA
Protein sequence (LotjaGi5g1v0099400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSHSLDVVSYIPQSSMVEQVHGGSNEPQMSTINSTFTESEKTCIVKLAVGAMEEFTKMAHVGAPLWIPTFHTEILNQQE YVRVFPALLGPKPLGFRSEASRETMIVIMNPSTLIEILMNVNQWSAMFHSIVSSATTTEILSIGVPGNYDGALIVISAKF QVLSHLVPTRDNYFLRYCKLHPDGAWAVVDISLDYMRPVATSKCRRRPSGCMIQELTNGFSKVTWIEHVEVEDNVVHDLF INLVNSGFAFGARRWIETLERQCKRIACTITSNIPPDNYSGITPEGRKSLMKFAEKIMQSYCNYVGASPPPPYIWTVHTT PPTGANDVRVMTRNHTDASGAIIGLFISVATSFSLPVPSKSLFDFLQNVTSRNQWDIQTNGFVVQELAHITNGHAPSDFV SLLKANCANSSEKTKIIVQEVCTDSTGSYMVYAPIEIDTLNLVLSGCNPDYGTIQPSGFAILPDGLGLSGGSVTDVASGG CLCTFAYHTLIEGNITEFPPDMVTYLCNFMKCTIERIQAAMMRVST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 21 | 522 | 502 | 3.6E-190 | – | |
| PANTHER | 21 | 522 | 502 | 3.6E-190 | ||
| ProSiteProfiles | 38 | 268 | 231 | 38.889 | ||
| SUPERFAMILY | 40 | 266 | 227 | 9.2E-30 | – | |
| CDD | 45 | 263 | 219 | 3.38268E-102 | – | |
| SMART | 47 | 265 | 219 | 5.9E-44 | ||
| Pfam | 50 | 265 | 216 | 9.4E-43 | ||
| SUPERFAMILY | 283 | 511 | 229 | 1.92E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0099400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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