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LotjaGi5g1v0100100.1

Overview

Field	Value
Gene ID	LotjaGi5g1v0100100
Transcript ID	LotjaGi5g1v0100100.1
Lotus japonicus genome version	Gifu v1.2
Description	transcription repressor; TAIR: AT2G36026.1 Ovate family protein; Swiss-Prot: sp\|Q3EAL1\|OFP6_ARATH Transcription repressor OFP6; TrEMBL-Plants: tr\|I1JQ68\|I1JQ68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0100100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr5:18062726..18063572) extracted from Lotus japonicus Gifu genome v1.2.

AAAGCAACACAACACACCTCGCCAACACTGAAAACAGAGCAATGTCTACCTCCAGAAGAAAACTCCTTCTAAACTCTGTC TCCGTGAACCTGGGCTGCGGAACCTGCAGAAAACCAAAACTTGATCTCATATTCCACCCAAAACCAAAGCCCAAGAACTC CACCACCTACCCAATACGCAAACTTCATCACCATCATTCATTTTCAGATCATGACTCTGCCACCAGCACCACCACAACCA CAAACACCACATTCTCTCCATGCAGCTATGTTGAGTTTGGTGACTATGAGAAATCTTCTAGTTCTTCAAACACCATTAAG GGGCCTGGAAAAGTTGGAAGAAGAAGAAGTGAAAGCGGCGTGGCAGTGGAGAAAGACTCTGATGACCCTTACCTGGATTT CAGGCGTTCCATGCTGCAAATGATATTGGAGAATGAGATATACTCTAAGGATGGTCTCAGGGAGCTTCTAAACTGCTTTC TTCAGCTCAATTCACCGCAACACCATGGAGTTATTGTCAGAGCTTTCACTGATATCTGGAATGGGGTCTTCTCTGTGAGG TCTGGTCCTGTTCACAGAGGCTAGTTAGCTCCACCTGAAATGGTATGTCACGTGACTTCTAGGGGATGCACGTGGCCAAC AAGTTGTACTCGTATCGTTGCTAATGTGTGATGTAATCAATATCAATATACTCTAAGAAAAGAAACCCTTTCTGGGTTAC GTGTCACCTTCTCCTTTTTCCTGGATTATTTTAAGTTTTCTTCTTATTTCAAGTACCCACTCTTCTTCTTTTAACTTCCC GCTCTTCTTCTTCTGAAAATTTTCACAAAACTTTGAAATGAAATAAG

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CDS sequence (LotjaGi5g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCTACCTCCAGAAGAAAACTCCTTCTAAACTCTGTCTCCGTGAACCTGGGCTGCGGAACCTGCAGAAAACCAAAACT TGATCTCATATTCCACCCAAAACCAAAGCCCAAGAACTCCACCACCTACCCAATACGCAAACTTCATCACCATCATTCAT TTTCAGATCATGACTCTGCCACCAGCACCACCACAACCACAAACACCACATTCTCTCCATGCAGCTATGTTGAGTTTGGT GACTATGAGAAATCTTCTAGTTCTTCAAACACCATTAAGGGGCCTGGAAAAGTTGGAAGAAGAAGAAGTGAAAGCGGCGT GGCAGTGGAGAAAGACTCTGATGACCCTTACCTGGATTTCAGGCGTTCCATGCTGCAAATGATATTGGAGAATGAGATAT ACTCTAAGGATGGTCTCAGGGAGCTTCTAAACTGCTTTCTTCAGCTCAATTCACCGCAACACCATGGAGTTATTGTCAGA GCTTTCACTGATATCTGGAATGGGGTCTTCTCTGTGAGGTCTGGTCCTGTTCACAGAGGCTAG

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Protein sequence (LotjaGi5g1v0100100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSTSRRKLLLNSVSVNLGCGTCRKPKLDLIFHPKPKPKNSTTYPIRKLHHHHSFSDHDSATSTTTTTNTTFSPCSYVEFG DYEKSSSSSNTIKGPGKVGRRRSESGVAVEKDSDDPYLDFRRSMLQMILENEIYSKDGLRELLNCFLQLNSPQHHGVIVR AFTDIWNGVFSVRSGPVHRG

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR33057:SF77 View details on PTHR33057:SF77 Search for proteins/transripts with this domain View external data on PTHR33057:SF77	1	175	175	5.0E-66	–
PANTHER	PTHR33057 View details on PTHR33057 Search for proteins/transripts with this domain View external data on PTHR33057	1	175	175	5.0E-66	IPR038933 Show description in modal box View details on IPR038933 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	81	111	31	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	97	111	15	-	–
TIGRFAM	TIGR01568 View details on TIGR01568 Search for proteins/transripts with this domain View external data on TIGR01568	107	167	61	1.7E-22	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51754 View details on PS51754 Search for proteins/transripts with this domain View external data on PS51754	109	168	60	18.446	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF04844 View details on PF04844 Search for proteins/transripts with this domain View external data on PF04844	113	169	57	1.4E-24	IPR006458 Show description in modal box View details on IPR006458 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0045892 View details of GO:0045892 AmiGO InterPro QuickGO	Biological process	Negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.	Subterm of View details of GO:0006355 View details of GO:0010629 View details of GO:1903507 View details of GO:2000113 Negatively regulates View details of GO:0006351

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0100100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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