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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0100300 |
| Transcript ID | LotjaGi5g1v0100300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription repressor; TAIR: AT5G04820.1 ovate family protein 13; Swiss-Prot: sp|Q9FMC8|OPF13_ARATH Transcription repressor OFP13; TrEMBL-Plants: tr|A0A1J7HFE9|A0A1J7HFE9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0100300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18104804..18105968) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATAGCAATGAATTGCATTTACTTTCAAAGCCTATAAAAATTGAAGATACATTGAGTTGACCCTACCATCCACCCCT TTAGAGGCGGTAATCTACAGACCCAAACTTTTCCCACCGCTACCTTCAAAATCTTCCCCCCTAAACTCCATCTCTCACTT CACCATCAATGCCTCTTACACTCATTTGAACCCAGAAATTCCTAGAACTAGTCTCTGTCTGAATTACCTTCAAGAAAAAG AAAAAAAAAAAAAAAACAGGTGAAAAAATGAAGTTTCTTTCTCTTCTAAAAAGAAGATCCTCTTCTTCTTCATGGGGCTT TCCCTATTGTCACCCACCCCAAACCCTTTCTTTCAGAGCCAACCAAAACGATGTCTTATTCAAAACCATGAATTCAGCCT ACATAGACTCCCCCACTACTGCCACCACTATTACCTCTGTCACTGCCACCACCAACACTCCTAGCACGGAGATTCAGGAA AGCACCGAATCGGTTTTCACTGAATCTCCCAACTCCCCCTCCATCATCGCCGCCACCACCACCAACACTACTAACACGGA GATTCAGGAAATCACCGATTCCGTTTTCACTGAATCTCCGTTGTCAGCGAGTTTCTCATCGATTTCTGACAATGACTCGA GGGGTGGTGCGGACCAAATTGATATTCTGATCCGCGGTTTGCGCGATTTAGATCGGCTTTTCGTTGAGCCAGAAAAGTCC AGCTCCATTTTTGAGGCCAAAATTGGGGCTTCAGAAAGCTTTGCGTCCTCGCCGTTCAGAGACAGCTTGGTGCAGCCGGT GGATTCCGGAGACCCTTACTGGGATTTCCGAAATTCCATGGAGGAGATGGCGGAGGCTCACGGTGTCAACACCTGGGAGG ATCTCGAGGAGCTTTTGTATTTGTTCTTGAGGCTGAATGAGAAAACCAATCATGAGTACATTGTGGATGCTTATGTTGAT TTTTTGAAGGATCTTGCGGTTGATTCCAACGATCCTTGCCCTTCTCCTGCATCGTGTGGTGGTGATCAGAAGGAGGTTCA TGCTCGTGCCCCTAGTTTTTCTCCTTGGCTGTTTGAACAAGTGAAAAAAGAGATTGGACCTGAAGATGAGGCTTCTTCGT CTTCATATTCAAACACCTGAATTCATGTTAACATGTGTAGACCCC
CDS sequence (LotjaGi5g1v0100300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTTCTTTCTCTTCTAAAAAGAAGATCCTCTTCTTCTTCATGGGGCTTTCCCTATTGTCACCCACCCCAAACCCT TTCTTTCAGAGCCAACCAAAACGATGTCTTATTCAAAACCATGAATTCAGCCTACATAGACTCCCCCACTACTGCCACCA CTATTACCTCTGTCACTGCCACCACCAACACTCCTAGCACGGAGATTCAGGAAAGCACCGAATCGGTTTTCACTGAATCT CCCAACTCCCCCTCCATCATCGCCGCCACCACCACCAACACTACTAACACGGAGATTCAGGAAATCACCGATTCCGTTTT CACTGAATCTCCGTTGTCAGCGAGTTTCTCATCGATTTCTGACAATGACTCGAGGGGTGGTGCGGACCAAATTGATATTC TGATCCGCGGTTTGCGCGATTTAGATCGGCTTTTCGTTGAGCCAGAAAAGTCCAGCTCCATTTTTGAGGCCAAAATTGGG GCTTCAGAAAGCTTTGCGTCCTCGCCGTTCAGAGACAGCTTGGTGCAGCCGGTGGATTCCGGAGACCCTTACTGGGATTT CCGAAATTCCATGGAGGAGATGGCGGAGGCTCACGGTGTCAACACCTGGGAGGATCTCGAGGAGCTTTTGTATTTGTTCT TGAGGCTGAATGAGAAAACCAATCATGAGTACATTGTGGATGCTTATGTTGATTTTTTGAAGGATCTTGCGGTTGATTCC AACGATCCTTGCCCTTCTCCTGCATCGTGTGGTGGTGATCAGAAGGAGGTTCATGCTCGTGCCCCTAGTTTTTCTCCTTG GCTGTTTGAACAAGTGAAAAAAGAGATTGGACCTGAAGATGAGGCTTCTTCGTCTTCATATTCAAACACCTGA
Protein sequence (LotjaGi5g1v0100300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFLSLLKRRSSSSSWGFPYCHPPQTLSFRANQNDVLFKTMNSAYIDSPTTATTITSVTATTNTPSTEIQESTESVFTES PNSPSIIAATTTNTTNTEIQEITDSVFTESPLSASFSSISDNDSRGGADQIDILIRGLRDLDRLFVEPEKSSSIFEAKIG ASESFASSPFRDSLVQPVDSGDPYWDFRNSMEEMAEAHGVNTWEDLEELLYLFLRLNEKTNHEYIVDAYVDFLKDLAVDS NDPCPSPASCGGDQKEVHARAPSFSPWLFEQVKKEIGPEDEASSSSYSNT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 12 | 12 | - | – | |
| PANTHER | 6 | 76 | 71 | 6.7E-55 | – | |
| PANTHER | 6 | 76 | 71 | 6.7E-55 | ||
| PANTHER | 97 | 251 | 155 | 6.7E-55 | – | |
| PANTHER | 97 | 251 | 155 | 6.7E-55 | ||
| ProSiteProfiles | 175 | 235 | 61 | 16.302 | ||
| TIGRFAM | 177 | 236 | 60 | 2.4E-20 | ||
| Pfam | 180 | 236 | 57 | 2.3E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Negative regulation of transcription, DNA-templated | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi5g1v0100300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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