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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0101600 |
| Transcript ID | LotjaGi5g1v0101600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Splicing factor, arginine/serine-rich, putative; TAIR: AT2G37340.1 arginine/serine-rich zinc knuckle-containing protein 33; Swiss-Prot: sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1; TrEMBL-Plants: tr|K7K9P1|K7K9P1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0101600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18273009..18279459) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTGAACAAACGCGAGTAGCAGACGTTTGGCATTCCCCCAAAAACCTATAACAAACGCAACGCAGCAGACTCTTCATT TCATCTCCACCCCAAACAAACCCCACACACTGTAACTGATTCCATTTCTTCATTCTCCATTTCACCACACTCTTCGTTCC ATTCAGTTTTCAACACTTCCATAACCACCACTCGCCACGCGTCGTTTCGATCACTCGATTTCCACTCACCTAACCGAGTC GACTCGGGTTAACTCGGGGGTGTTCGAAGCGAGCTTGAGCCTCACGCGTGCGTGCTCCAGAAGGTTCGTTTCATCACTCT TCTGCTACGCTCTTCACACTTTGAATCGCTACCATGAGTGAAACATGTTAATCATCTTTATGCTTCGTAGTTAGGGTTTA TCGTTGTTCTTGATTCATGCGTTTCACGTGTTCGATGAAATTCCTGTTCCAGCGTTGTCTTTGTTTTTTCTGTTTTTGCT ATTGTAAGGAATGTGGATGTTCTTGCATTGATGTGTGTTTGCTTGGAATGAAAAGAAAAGTCAAAGTTCTTTGCTCTTTG TATTAGATGTGATATGATTTTCGATCTTGTGATCCTGCAGATGTCACTTTACATTGGTAATATTACTGAACGCGTTCGGG GAGAGGAACTCGAGCGTGTTTTTCGTAGATTTGGGCATTGTAATGTTCGGGTGAAAAAAGAAGGCTATGGCTTTGTGGTG TTTGACTTCCCTGAGGACGCTGAGAAAGCTTTGAGGGCACTGAAAGGTAGAAATATATGCGGGGAACGGTTGGCTCTGAC ATGGTCCAACAAACAGCCGAATTCAAATTTTACAAGATTTGATAGGGGTGGAAGAAGAGGTAGCTATGAGTTGCAACGTG GGAGGGATTCTGACAGTTTAGGCTACGCGAGGAGGAAAGAGGGTTTCAATGGATGGAGGAATCGCAAGATGGGTGAGGCT GGAAGGGGTAAATCTGTTGAAGTGCCTGGTGAAGAGGGGGGATATCATGAAGATGATTTCAAGGATTACGCTGGGGAGGA AAAAGATTATGGGGGGAGCTTTCCAGATGAAGGTGGTGGAGCTGTTCCTAACCTGGAGGACAATGGTGGATGGAACGAGC CAACTCATGACCCATCAGTTGACAATGAGAAAGGAAATTCTCTAGGATTTGATCGTTATGAACCTCATCATGGCTATGAC CCGAAGCATGGCAATGGAGATTATCATGTGGGTTGCTCTGGTGGTTCCCCTGCAGTTAATTCCCAAGAGAACATGGGCAG AGCTCAAATTGGTGAGGAAACCTCAAATCGTCCAAATGATTCCAAATTCCGGCAAACTTGTTATAGATGTGGTGAATCAG GTCATAAAATGCGAAATTGTCCGAAAGAGCATTCTTCAGGGAGAAAATATGACTGGTCGGATGTTGGGCAGAATAGTAGA ATTAACCAGGATCATAGAGTTGAAGATGACAATAAAATTGGATCTGGTTCCTTGGTGAAGCTGCAGTCAAGTGGGGATAC TTTATCAATGAGGCGCCAGAGAGGTACAAGGATGTCTGGTTCTCGACATAACCGAGCACTATCTAGAAAAGAGTCACCAC CACCTGTAATAAATGAAACTGATAGGCATCGAAGAAGGGAGTATGGAAGAAAGAAGCGAAGCAGAAATGAAAGTGAATCA CCAACCAGATCTTGGGCAAAGATATCAAAGTGGTCCGACTCATCCCCTGTGCCTGCAGATTACTCTGCATCTCGCTCACT CTCAAATTCTCAATCATCCAAGTCATTGGCCAGGCCTACTTCCAAATATAGATCAAGATCAGGGTCTTCTAGAGCACATT CGTCATCCTCAAAGTTAAGCTCTTCGTCAAAATCACGGACTTATAGAGGCAAAAGTTTGAATTCTAGGAGGTCAAGCTCC CCTACATCTGTATCACTTAACAAGCCTTTATCGTCGATTCCAACTAAATTCCAGTTGAATGCAAAAAGCTCATCCATTAA TGGTACTGCATGTGAGAATGTGGATCATTTGGTTTCACAGGGACAGCAGATTGGCAGCACAATGGGATTGGAGTATCCTC AAATACAATCCAAGGATACATGCATTGCTGTCAATGGAAAAGCTGCTGTAGACACCACAGTGGTGGATGCCATGGAAAAG GAACTATGTATGCCGGAGGACAATAATGAAAATTGTACTCTCGTAAACCCATCTGATGGAGTGGCAAATTTATCCCAGCC AGTTGCTGAGAAATTGTCTCCATTAATAATGAAAGAGACAGAGGGCTTTCCACATTCTGGAACATCAATGGTGGATGATA TTCCAGCAGAAACTCAGAAGCTAGCTTCTGAAACTCATGTTAATCCCCATTCTGGCCGTTCAACCATCATATCCACAGAG GAAATGTGCATGGTTCTCAATAACTATGGCCTGGAACTTCCAAACGATTATGAAAAAAGTTCCACAACAGAGGCCTTCTT TGGTGCTGCTCGGTTGTGGCCTTGGCATATTGTTTATTACCGTAGGTTGAAGAAGGGCCCAATTTCAACTGAGAACTATG CCAGGCGGGTTGCTCAGAATCAGGAATTTGGCATTGCTGATAAGTATATAAGAAGCAGTAGTGGATGGGAAGAATTCAGT CTTGAGAACCTTAACAGTTAATACTGCTACAAATGATGCTCTGCTGGTTCATTTATCCTCACAGGAGCTATGAGTCTATG ATGTTTCTTCTTTCCACATGGCTCTCAATGGAATTCATATGTGATTCTCAGTGGTTATTTTCAAGAAGTTTGCTCAGGTA ATTATGCACATCATACTGTTATTCATCATATATCTTTGCTTGCCCATGGTATCCACTTAGTTATAGTCCAGTGCCATCTT GTAAATGATAACATTTATATCAATTATATACTGTTGAATGTTTATGGAATGACATGAAATTTATCCTATTTTTAATTTTG TTTTGATTGTTATTGTGCTTGCTTAAAGACGGAGAAGAGGAGCTATAAGAGCTCCATTACCGTGCTAATGAGTTCATTGC TGTTACCTTTGTAATGCTTGGGGTATCAGCTAGCAAACATGGACAAACTGAAAGACATAGTACAGGATGTGACAGGCTGA ACACTATATAAGAGAAAAGTTTAGTGTTTGCAGTGTTGTCAATCCTGGAGAGCGGCGTGTAGCAGCTGACCCTGAAAGTG CTATAGTGGTATAGCGTGCGGGATGACTGCTATGCTGAGTGTACATTTTATATAATGTACACTACAGACTACACTATACA TAAATGCTTATAAACGAGGGACGGTACTCAAAATTCATGAGATATATAATTTATAATAAAAATAAACAAAACGTACCGTA AATACTTTAAAAAAGAGTGAATGGCGATGAAATGACAAAAAAGAGAGGTGGCAATAAACCCGAAGAGAGAAAAAGAAATT ATAAAAGAATCAATGGAATAAGGTAAAATAGAAAGAAAAAAAAAAGACAGAAACGAGAAGGCAGCTTGATGGAGAGATCT AAGATAAAGGCTATTGGGGTTGCAGGAGGGTTGTTGGAAGCTCGCCAAATTGTCATCGGAGGCGCTGCGGTGGCCGGTCG ATGGTAACACGGTGGCTGGTTGATGGGTATGCAGAAAGAATCGACTCCCAGCATGAAGATGTAAAAGCAAGCGTCTGTCA ACTTCTCAGTTTTTTTTCACATTTATCGAGAAGTTAAACCAAGATTATCCCAACTAATGGCCCTAACGCAGAAGTTATGA GGGTATTTTTTGTCTGTATCAAACCTTTTCCACGTAGCGGCTTTGAATTTGCATGCAAAAGCAGCTGTGGAAGCCGCGAT GGTAAAACGCTCCACGATGGGAAGCATTGTAGCAGCCTGGGACCGCTCTGCTGTGTGACAGCGTGATTGCACAAAGCGGG CAATTAACAACCCTGAGTATACTATAATTATTAAATGACCTTTTGAACTTGAAAATTTAAATCCTCAAACATAAAGTAAA TGCATCTCAACATGCTACAAATATGTAAAAAGTAAATTATCCTATTTTCCTGAGCCATTATATTCAATTTTTATGCAGCT GTTTGTCGCTCTGTTGTTTTTGAATAATTACTTAAAATGTTTCTGTTTTTGCTCTCTGGTCTTCATTTTAGCTTATTAAC TAGTGCTATAATGTATTAGTATATTTGTTTGTGGCTTCTATAGTGTTTTGAGCAATGATAGGCACACACACAAAGACACT TCACGCCACATTCTATCCAAGTATGAAAGTTATTTAACTAGCAATCTACCTCGAAGTAGCCAAGGAGTCTATAGCAAGAA ATTTGATTAATATGAGAAGTTAAATGGTTAATGATGCTTAAGTTATTGATTTAATAAGCTTAATACTTGTTAAGTGGAAG TGATATTTTAGGGGTCATGATTCAAGTCAACTTGCTCCCATGAGGAAACGTTCTAATCTGTTATATTGTGATGAAGTAAC ACTTGCAAAAAATAAGTGAAATTTTCCAATACACCTGAAAATTTTGATTCCAGTAATTTGGTTCAGTTGCTCTTCCAATT GAGTGGATTATTGACAAAGTATAAGCCTTCTTCCAGTCTACTGTTTGTCTTTCTGTAGGGGAGTTCTGACAGGATTCATA AATTGCGAGCTTTGCATTCATAGAGTAGCCTCTTAAGCCTTTTGGTATTTATTAGATTAGTTGGCCATGTATCAATATTG TAAAGCCTGAGGAAAAAAAAAGGTAGAAAACCATGGTTGACATCAATTAATATCTGAAACAAGTACCAGGTTACCCTTTT TTCTAATAGCAAAACAAAGTTAATATGTTATTCTTTCTGGGTCTGCATCAAACGGTTAACATGTCTTGCACGATTGAGAG CCTATCTTACTGAAATTTAGTCATTCCTGAAAAGCTACAAAGCTGCCATGTCTGATAATATTCATCTTTAAGCATGTTAT CAGTTGTATGTGGCAATTGGCACATTATGGATTTTCCATCACGTGATAAAGTTTGGTCTTTATAAGCTGCAATTGAGTAT GATTCACTCAGGAAACTGGACAACCAAGTTAATTTTATGGATATGAATGTAAAAATCTGCCTTTTTCTTTTCTTGGGTTG TAAGGGGGGTGGAGTAAGGAAAAAAATATCTTGTTCTTCATTCTATTATGTTGATAGACAACCACTAAACACTCATTTGT TGTGAAAGTCAAGTGAGTTTGAAGTCCCACATTGGGTGGAAGTGAAAGTGTTGAAGAGTATATAAGAGGTAAAGACCCAC AACAAACCCAATGCCTTAAGGTTTTAAGGTTTTGGGTAAAGATGTGGTGTCCATCTCTTGATGGTCTTTTTTGTTAGTCC AGTGTGGTGTGCGGAGAGACCTCCATGCCTCATGACTCAACCTCATTGACGGACTTTCTGACTTGAACTGGGTTCTTTAA CTTTTTCTTGTTGTTAGTAATTATTTTCACTTGAAATGTTCTGACTTCTTGAGCTACTAGATACTTCAATTCTCTTTTTA GCAATTGACAATGGATTTGTATCCACCTGTGTCTCATTACCATCTCATTGGAGATTGAGAAATGAGTTTTCTTTTGCAGG GACATAGCCTGGCGAGTCATGGATATGGGGTACACGTATTTGTGTTGTTATCTCATGATAGGACACACTAACCAGATTTC AAATCTACTTGTAATTTGGTAGTTGTTACACCTTTATAAATCAAAGTTGATGCAAATGCTTAGAAAAATGGCAGAGGGGT TATCTTCAACTTATTGTTGCTGGGTTAAACAAAATACCTGGGCTGAACAATGGTAGACTGTTTAATGGAAGGTTTTGTGA AGAGGTTGGTCGGTGATAGAACCCAGAAAATGTAGAAGTATTATTGATGAAGAACCCTAATCCCAAATTGGGAATTAGGG GAAAGATACATGAGAGAGATGTCAAACACCCTCTCTAACCCTAGAAAGAGAACCACTTCTCTCTCTAAACCCAAAACCTA ACTGATTACCAAAGATAACCTAATGCTCTCTAATCACACTTATTTATAATCACACTTATTTATAGAAAACATGCCTCTTA ACCCTATAACTAACTAACAAACTACTGACACCACTTAACCACTAACAAGCTAACCCCAGTTACCTATCAGTCGGTCTCTT CTTGAATAGATTTTTGAGGTTTCAAATTAAGTCATTGTCTGAGTGGATCTGAACGTATGGTTGGCATTTTTATCAAAATT ATTATTGTTGTTGTTATTGGTATTATTTAAATGTTCAGATGTGCTTGTGTATATGAGACTGCAAATTTTAGGTATTGACA TTATTTTCATATAAACTAGCGGGATTACCCGTGCCCTGCACGGGTGACTTTTGTTATTTACAATTTAAATTTCATGTAAT ATTATGTTTTGTATCTTTTTAGTAAATATATTTTAACAATTGTTTCAACTA
CDS sequence (LotjaGi5g1v0101600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACTTTACATTGGTAATATTACTGAACGCGTTCGGGGAGAGGAACTCGAGCGTGTTTTTCGTAGATTTGGGCATTG TAATGTTCGGGTGAAAAAAGAAGGCTATGGCTTTGTGGTGTTTGACTTCCCTGAGGACGCTGAGAAAGCTTTGAGGGCAC TGAAAGGTAGAAATATATGCGGGGAACGGTTGGCTCTGACATGGTCCAACAAACAGCCGAATTCAAATTTTACAAGATTT GATAGGGGTGGAAGAAGAGGTAGCTATGAGTTGCAACGTGGGAGGGATTCTGACAGTTTAGGCTACGCGAGGAGGAAAGA GGGTTTCAATGGATGGAGGAATCGCAAGATGGGTGAGGCTGGAAGGGGTAAATCTGTTGAAGTGCCTGGTGAAGAGGGGG GATATCATGAAGATGATTTCAAGGATTACGCTGGGGAGGAAAAAGATTATGGGGGGAGCTTTCCAGATGAAGGTGGTGGA GCTGTTCCTAACCTGGAGGACAATGGTGGATGGAACGAGCCAACTCATGACCCATCAGTTGACAATGAGAAAGGAAATTC TCTAGGATTTGATCGTTATGAACCTCATCATGGCTATGACCCGAAGCATGGCAATGGAGATTATCATGTGGGTTGCTCTG GTGGTTCCCCTGCAGTTAATTCCCAAGAGAACATGGGCAGAGCTCAAATTGGTGAGGAAACCTCAAATCGTCCAAATGAT TCCAAATTCCGGCAAACTTGTTATAGATGTGGTGAATCAGGTCATAAAATGCGAAATTGTCCGAAAGAGCATTCTTCAGG GAGAAAATATGACTGGTCGGATGTTGGGCAGAATAGTAGAATTAACCAGGATCATAGAGTTGAAGATGACAATAAAATTG GATCTGGTTCCTTGGTGAAGCTGCAGTCAAGTGGGGATACTTTATCAATGAGGCGCCAGAGAGGTACAAGGATGTCTGGT TCTCGACATAACCGAGCACTATCTAGAAAAGAGTCACCACCACCTGTAATAAATGAAACTGATAGGCATCGAAGAAGGGA GTATGGAAGAAAGAAGCGAAGCAGAAATGAAAGTGAATCACCAACCAGATCTTGGGCAAAGATATCAAAGTGGTCCGACT CATCCCCTGTGCCTGCAGATTACTCTGCATCTCGCTCACTCTCAAATTCTCAATCATCCAAGTCATTGGCCAGGCCTACT TCCAAATATAGATCAAGATCAGGGTCTTCTAGAGCACATTCGTCATCCTCAAAGTTAAGCTCTTCGTCAAAATCACGGAC TTATAGAGGCAAAAGTTTGAATTCTAGGAGGTCAAGCTCCCCTACATCTGTATCACTTAACAAGCCTTTATCGTCGATTC CAACTAAATTCCAGTTGAATGCAAAAAGCTCATCCATTAATGGTACTGCATGTGAGAATGTGGATCATTTGGTTTCACAG GGACAGCAGATTGGCAGCACAATGGGATTGGAGTATCCTCAAATACAATCCAAGGATACATGCATTGCTGTCAATGGAAA AGCTGCTGTAGACACCACAGTGGTGGATGCCATGGAAAAGGAACTATGTATGCCGGAGGACAATAATGAAAATTGTACTC TCGTAAACCCATCTGATGGAGTGGCAAATTTATCCCAGCCAGTTGCTGAGAAATTGTCTCCATTAATAATGAAAGAGACA GAGGGCTTTCCACATTCTGGAACATCAATGGTGGATGATATTCCAGCAGAAACTCAGAAGCTAGCTTCTGAAACTCATGT TAATCCCCATTCTGGCCGTTCAACCATCATATCCACAGAGGAAATGTGCATGGTTCTCAATAACTATGGCCTGGAACTTC CAAACGATTATGAAAAAAGTTCCACAACAGAGGCCTTCTTTGGTGCTGCTCGGTTGTGGCCTTGGCATATTGTTTATTAC CGTAGGTTGAAGAAGGGCCCAATTTCAACTGAGAACTATGCCAGGCGGGTTGCTCAGAATCAGGAATTTGGCATTGCTGA TAAGTATATAAGAAGCAGTAGTGGATGGGAAGAATTCAGTCTTGAGAACCTTAACAGTTAA
Protein sequence (LotjaGi5g1v0101600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLYIGNITERVRGEELERVFRRFGHCNVRVKKEGYGFVVFDFPEDAEKALRALKGRNICGERLALTWSNKQPNSNFTRF DRGGRRGSYELQRGRDSDSLGYARRKEGFNGWRNRKMGEAGRGKSVEVPGEEGGYHEDDFKDYAGEEKDYGGSFPDEGGG AVPNLEDNGGWNEPTHDPSVDNEKGNSLGFDRYEPHHGYDPKHGNGDYHVGCSGGSPAVNSQENMGRAQIGEETSNRPND SKFRQTCYRCGESGHKMRNCPKEHSSGRKYDWSDVGQNSRINQDHRVEDDNKIGSGSLVKLQSSGDTLSMRRQRGTRMSG SRHNRALSRKESPPPVINETDRHRRREYGRKKRSRNESESPTRSWAKISKWSDSSPVPADYSASRSLSNSQSSKSLARPT SKYRSRSGSSRAHSSSSKLSSSSKSRTYRGKSLNSRRSSSPTSVSLNKPLSSIPTKFQLNAKSSSINGTACENVDHLVSQ GQQIGSTMGLEYPQIQSKDTCIAVNGKAAVDTTVVDAMEKELCMPEDNNENCTLVNPSDGVANLSQPVAEKLSPLIMKET EGFPHSGTSMVDDIPAETQKLASETHVNPHSGRSTIISTEEMCMVLNNYGLELPNDYEKSSTTEAFFGAARLWPWHIVYY RRLKKGPISTENYARRVAQNQEFGIADKYIRSSSGWEEFSLENLNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 99 | 99 | 6.4E-16 | ||
| ProSiteProfiles | 1 | 71 | 71 | 13.601 | ||
| PANTHER | 1 | 674 | 674 | 2.1E-153 | – | |
| PANTHER | 1 | 674 | 674 | 2.1E-153 | – | |
| SUPERFAMILY | 2 | 97 | 96 | 1.36E-17 | ||
| SMART | 2 | 67 | 66 | 4.4E-14 | ||
| Pfam | 3 | 64 | 62 | 2.3E-12 | ||
| MobiDBLite | 81 | 450 | 370 | - | – | |
| MobiDBLite | 83 | 153 | 71 | - | – | |
| MobiDBLite | 187 | 204 | 18 | - | – | |
| MobiDBLite | 215 | 243 | 29 | - | – | |
| SUPERFAMILY | 235 | 266 | 32 | 2.97E-6 | ||
| Gene3D | 242 | 293 | 52 | 2.2E-6 | – | |
| SMART | 246 | 262 | 17 | 9.6E-5 | ||
| Pfam | 246 | 262 | 17 | 2.1E-5 | ||
| ProSiteProfiles | 247 | 262 | 16 | 10.922 | ||
| MobiDBLite | 249 | 270 | 22 | - | – | |
| MobiDBLite | 296 | 315 | 20 | - | – | |
| MobiDBLite | 324 | 345 | 22 | - | – | |
| MobiDBLite | 361 | 450 | 90 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0101600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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