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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0102100 |
| Transcript ID | LotjaGi5g1v0102100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein family; TAIR: AT5G06250.2 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q9FNI3|Y5625_ARATH B3 domain-containing protein At5g06250; TrEMBL-Plants: tr|K7LHY6|K7LHY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0102100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18440697..18443701) extracted from Lotus japonicus Gifu genome v1.2.
GCTCACTCTCACTCTGTCCCCCACATTGTTTCTCTCTCTCTCTCTCTGATCTCTTTGTCATATCTTTAGAAGCTCCATCA AATTAATAGTTCCCACAGTTTCCACATCAAACCATAACCATCATCACTCACTCACGCCTCTTCCTCATTCCCTCTCCTTT CTCCTCCCATTCTCCAAAACACTCAATTCCTGAAAACAACACCAACGTACAAGAAAAAATGTCCATAAACCACTACTCCA TGGATCTTCCTGAAACAACACTGTTTTGGACTCCTCATCAGCATCATCAACAAATGGAACCACCACCTTCAATCATCCAC CAAAACCAGCAACCCACATGGTTCAACCTCAACAACAACCACCAAAACAACGACGAAGAAGATGAAAACGACGACGGCGA CGAAACCACCACCACCACAACAACAACAACCGCCACACCGAAAGGAGAAACAGAAAACGACGACGACGACATTAAGGAAC CCATGTTCGAGAAGCCGTTAACTCCGAGTGACGTGGGCAAGCTGAACCGCCTCGTCATCCCAAAGCAGCACGCGGAGAAG TACTTCCCCTTAAGCGGCGGCGGCGGTGGTGGTGGTGACTCGGCCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGA GTCAGGGAAGTGCTGGCGGTTCCGTTACTCGTACTGGAACAGCAGCCAGAGCTATGTTCTCACCAAGGGGTGGAGCCGTT ACGTGAAGGACAAGCGTCTTGACGCCGGCGACGTCGTTTTGTTCCAGCGCCACCGTGATGATGCGCAGCGGCTCTTCATT GGGTGGAGGAGGCGCAGGCAGGGTGGTGGTGCCGCCGCCGCGGCGCACGTTAGCAGGATGGTGGGACATGGCAAGAGCAG TGGTGATGGGAATGAGGTTGGTGGTGGTGGTGTGGGCGTGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTG CGCATCATCATCCTTTGCCATATCAACATGACTGTCTTCATGCAGGTCTTGTTATCCTCTTTCTATTTACACACATTCTA ATTATCTTCCCTTTTTTGTTTCTCATATCTTGATTGTGGACTCTTTTTTTAGCAATGCTATGGTATAGTACTTTTTTTAC TACTTTTTTCTCTAACACATCTTTAATTGGGGTACAGATTTATAAATTTGTTATCAAATAAGAATGGAAAATAGATGTTT AGCGTTTCTCTTCTCTTACCATAGAAACATATAGAAGTACTGCAAGTCATCTTCCCATCCCATAAGAAGCAATTCAAATT GTTGGTGTGAAATTAATGAGTCCCAATTCATGTACAGTAAAGTAAAACAGTAACAACACTCATATAGAGACGACACACTA GCTGTTTTATTCTGTCCAATTATCTCTATTCCGATCATCTTATGCATTAAATTTATAACTTATTTTTTCTCTTCTCAGCC TAGATCACTCAATTAGTCTACACCTTAACTGTGTGCAAAAATCATTTTAAGAAATAATTTTTTAAAAATAATTTTAATTT ATCCACACTTGTTTTTTTTCATCTCAATTTTACTCTCATTTTTCATTTTATTTCTTCCATTTTTATTACATAATCTATCT CAATCTCTTATATCATTCATTTCTCTTTTTTAACTATGTAACTAAATGTCATGTGTAAGTATGTTGCAACTTTGTTTTTT AACTATGTTTTGAGTCTTAACCAAACATTATTCTCCTTTCTGTAACACATGAGAAGTAAACATTGTCTTTATGTGTATTC TCTTTTTCAAAAAGAGACAATTTGGTGAAATAACTACATTCTCATGGAAGTGCGTGAGGTTTACCTTCCAATTAATTGGG AGAAATGTGGGTTCCTGTTGGGATTGGCAATAAGGTGAAGCATACGCGCGCTCATACATTTTCCTTTAGTGAACGTGGGG GAGTTATTAAATGAACATTTATTTATTTTAACCTTTTACTTGCAGGTTCAGAAAACTAGGCGGTGCCGTTTAATTTCTTT TTTTTCCAAGTTGCATTCATCACTTGTTATTCATCCTAATCAGAAACATTGCATATTTATGCCTAATAATCACATGATTA AAACATTAATTGACCTATGCTGCACGTGTCAGTGGTTACAGGTACTAGAGGGTCCCAAGGTGAGAGGCAAAGGACGAGAG CGATGGGGAACATGAGTTCTTCAAGTCCTAGTTCAAGTTCAAGCAGGGTACTTAGGCTTTTTGGAGTGAACATGGAATGC CAAGCTGAACATGATGATTCTGGACCAGAATGCTCCTACAATGGTGACACTGTGCCTATGAACCAGGGCACAGATACCAA TCACCATTTTTATCAGTACTCTTCTAATTCTCATTCTAATTCCAACCCTCACATGGTACCTCACCAATCCTACTACTACT AGATGTTGGAGATTGGATTCTCAATTGTTTTGTCTACAGCTTACAACTATGTATCGACTTGGTTAATTATTATAATTACT GCTAATTAATGAATCAATCAATCTATCATTGACATGCATCAAAGGAGTTGTTATTGTCATTTTATATCAAAAAGCAGTAG TACAATTTTTTCTGAGGTCAGCAAAACTTCATAAATTAAGATGTACCCGAATTAAATTACTTCAACTCCTAACCGTCTTA AGCCAGCACTAGCAGTGAAAGTAATAAATACTATACAAAACTGCAAAATTGAATTAGAAATCAGATAGCATGAAAATGCA GTTATAGTTTATTTTAATGGCCCTGGTGTTATAAAAAGGCATGTTCAACTTGCGCGAATGGCTGTAGGGACATTTTGCCG ATGCAGTTTTATGCTAGGTGCATTCCTCGTGCATGTTCATATTACTACCATCTCAACGCAACATCATGTCTAAATTATCA TGCTAGTGTCCACTCAATGGTGTCTAGATGAGATGTTTCTTGCTTTAGACATCCCGATATATCGACAAAGTACTCATTTC GTTGTAAGACTTTTGAACTGAGTTAAAATGCTATTAAGCTTTGTG
CDS sequence (LotjaGi5g1v0102100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATAAACCACTACTCCATGGATCTTCCTGAAACAACACTGTTTTGGACTCCTCATCAGCATCATCAACAAATGGA ACCACCACCTTCAATCATCCACCAAAACCAGCAACCCACATGGTTCAACCTCAACAACAACCACCAAAACAACGACGAAG AAGATGAAAACGACGACGGCGACGAAACCACCACCACCACAACAACAACAACCGCCACACCGAAAGGAGAAACAGAAAAC GACGACGACGACATTAAGGAACCCATGTTCGAGAAGCCGTTAACTCCGAGTGACGTGGGCAAGCTGAACCGCCTCGTCAT CCCAAAGCAGCACGCGGAGAAGTACTTCCCCTTAAGCGGCGGCGGCGGTGGTGGTGGTGACTCGGCCGAGTGCAAGGGGC TGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGGTTCCGTTACTCGTACTGGAACAGCAGCCAGAGCTATGTT CTCACCAAGGGGTGGAGCCGTTACGTGAAGGACAAGCGTCTTGACGCCGGCGACGTCGTTTTGTTCCAGCGCCACCGTGA TGATGCGCAGCGGCTCTTCATTGGGTGGAGGAGGCGCAGGCAGGGTGGTGGTGCCGCCGCCGCGGCGCACGTTAGCAGGA TGGTGGGACATGGCAAGAGCAGTGGTGATGGGAATGAGGTTGGTGGTGGTGGTGTGGGCGTGGGGTGGACCAGAGGGTTC TATTCTGCGCATCCTTATCCTGCGCATCATCATCCTTTGCCATATCAACATGACTGTCTTCATGCAGGTACTAGAGGGTC CCAAGGTGAGAGGCAAAGGACGAGAGCGATGGGGAACATGAGTTCTTCAAGTCCTAGTTCAAGTTCAAGCAGGGTACTTA GGCTTTTTGGAGTGAACATGGAATGCCAAGCTGAACATGATGATTCTGGACCAGAATGCTCCTACAATGGTGACACTGTG CCTATGAACCAGGGCACAGATACCAATCACCATTTTTATCAGTACTCTTCTAATTCTCATTCTAATTCCAACCCTCACAT GGTACCTCACCAATCCTACTACTACTAG
Protein sequence (LotjaGi5g1v0102100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSINHYSMDLPETTLFWTPHQHHQQMEPPPSIIHQNQQPTWFNLNNNHQNNDEEDENDDGDETTTTTTTTTATPKGETEN DDDDIKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGGGDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYV LTKGWSRYVKDKRLDAGDVVLFQRHRDDAQRLFIGWRRRRQGGGAAAAAHVSRMVGHGKSSGDGNEVGGGGVGVGWTRGF YSAHPYPAHHHPLPYQHDCLHAGTRGSQGERQRTRAMGNMSSSSPSSSSSRVLRLFGVNMECQAEHDDSGPECSYNGDTV PMNQGTDTNHHFYQYSSNSHSNSNPHMVPHQSYYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 346 | 346 | 2.3E-123 | – | |
| PANTHER | 1 | 346 | 346 | 2.3E-123 | – | |
| MobiDBLite | 20 | 97 | 78 | - | – | |
| MobiDBLite | 20 | 48 | 29 | - | – | |
| MobiDBLite | 76 | 91 | 16 | - | – | |
| Gene3D | 79 | 207 | 129 | 2.5E-47 | ||
| SUPERFAMILY | 87 | 200 | 114 | 1.7E-30 | ||
| CDD | 88 | 190 | 103 | 1.56287E-28 | ||
| Pfam | 90 | 199 | 110 | 4.3E-29 | ||
| SMART | 90 | 200 | 111 | 6.5E-26 | ||
| ProSiteProfiles | 90 | 200 | 111 | 13.761 | ||
| MobiDBLite | 264 | 290 | 27 | - | – | |
| MobiDBLite | 267 | 290 | 24 | - | – | |
| MobiDBLite | 324 | 349 | 26 | - | – | |
| MobiDBLite | 324 | 355 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0102100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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