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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0102600 |
| Transcript ID | LotjaGi5g1v0102600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E2F transcription factor; TAIR: AT2G36010.3 E2F transcription factor 3; Swiss-Prot: sp|Q9FNY0|E2FA_ARATH Transcription factor E2FA; TrEMBL-Plants: tr|G7IE33|G7IE33_MEDTR E2F transcription factor; Found in the gene: LotjaGi5g1v0102600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18569312..18574345) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCACATCTATCCGAAACAAATTCCCTCCTTCCCTCGTTTTCTACTCCTGCCTCCACACCCTAAACTCCCTCATTTCC TGCAACCTTTTTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCACCACTCTCTCTCTCTAAAACCCTAGTCCTCTCCGA TCGTTCCACCCCAATTCGGATTTCAACCACCGTCTTCCCCCGCCACTCAATGTCCAGCACCGCTGGAGCTTCTGACAATC GCGCCACGCCACCGCTCCAACCTCCCAACCGCCCACCACTCAAACGCCACCTGGCCTTTGCTTCCACCAAGCCGCCATTT GCTCCGCCCGATGATTACCACACCTTTTCCGCCGCCGCCACGACCGCCGCTGGTCCCGATTCTAGGAGAGGCGCCCATCA CGAGCCTGAAGCTGTCGTTGTCAGATCTCCGGTGAGTCCTTCTGCTCTGTCTTACTCTGTTGGTGAATAATTGGGTCGTG CTTGTGTTTGGGTATTCCGAATCTGAAATGATTCTTTTGTGTTTTTTTTTGGTTAGGTTTTGTTTTGTTTAATTCTCTTA ATTTTTTTCTTTGAATTAGTTGGACTCAGCTTGATATGTTTTTTGATTTTTTGGTTAATTTGAAGCAAATTGTTGATTGC GTTGTTTTTAGTTGTTTTTTATTACTTTCATGATGAGAAGACTAGTTTGTTTCACAATCCTGGATCCAGACTCGAGTATA GTGTAGAGGGGGGAATTTAGCATCTGCGTTTCGGGTTTATTTTGAAGTAATAGTTGACGATGCGGCAGAGCTAGGGCTTA ATTGCAAGACAGTGTGACTTCCTGGTGGGATAAAATGATTTTGTAGGGTGTGTTCATCTGCTGGACTGATTGCCGCTGAA ACTGCGAATTCTTGTGCAATTTTAAGTCTTAGTGGCTTATGAACTTCATTTGTGGTTTAGTACGATGAGATTGAGTTGCT CCTGAACTTTTTTCATTTGTGGCGTAATGTGTCCCCCCCTTCCTGTTGGAGAGCTTAGGATCATTATGAGTTATGACTTA TTGTATGTATAAAAGGATAAAATTATAACTCTTGCTTGGTTGGTTGCATTTGGTCACTTTCGTGTGTCTGTATATCTTTG CTCATCTCTTGTCTCTTGCTAATCTTATTATTAATGGAACCTGATGGTGGTGCCAGTTCATAAAGCGGAAGAATGGAATG AATAACAATGAAGGAGACTCACAAAAGTGGGGTAATAGCCCTGGAGGCACTAACGTCATGAATAGTCCTTTTAAAACTCC TGTGTCTGCAAAAGGGGGAAGGACACATAAGTCAAAAGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAA ATGCTGGCAAGAATTCCCCCCCTTATTTTTCCTGTTGAACTAAGTTTACGATTCAATTGAGAATTTTTTAGTGCTTCAAA GCAACTTATATGCTCAATGTGTTTTGCTTCTTCCTTGCTGTACTCCAGCCATAATATTGTGTTTGATCAGACAGTATTTG TTGACATGCAGGTTCCCCTTCTCCTCTTACTCCTGCTAACAATCGTTATGACAGTTCCTTAGGTAATATTGGAAGATGTT TTAATCAACAAGCCCCTTACATTTCATTCCCTAATAGGGTATGTCGAATGTAGTTATTTCCAAGTGAAAAAAATGACAAT TGTACAGGAACTTCACAGGTCTTTTGACAAGAAAGTTTATCAATTTGATCAAGCATGCAGAGGATGGAATGCTTGACCTA AATAAAGCAGCAGAAACATTGGAGGTCCATTTTTTCGTTTAAAAATTACAATCAGAGTACCTGATATTTATTCTTTCTGT ATCATATATAAATTTATGTTTTCCTCTTGTATAGGTGCAAAAAAGGAGGATATATGACATAACTAATGTTTTGGAAGGGA TTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGTAATATGTGGTGCATATTTTTTTTATAAATTGGGTT AAATTTGTTTTTTGTCTTATATAATATGATATTTTTGTTTTTTAGTCCCTATTTAAATTTTGTTTATTTTTAGTCTTTAC TTTAACTAAATTGTTTGTTTATAATCCCTTACCCGGGACTAAATAAAAGTATGACTTTTATGTTTTTTGAGAGCTAAATA AATAAAAATTGAATGAAGACTAATTATAAAAATTATCATATTTTCGCAGATCAAAAACATATTTAACCCTTTGTAATTCC TTTTTATAGAAATGTAGCTTTTCTTTTGTTTAGCTAAAGTTTAGATGTATGCATAAGAGCATAGTTCTTATATCTGACCC TGTGGAATGTAGGGGAATTGAATCTTCTACGCCTGGTGCGGTTGATGGTGATATCTCTATGCTAAAGGTAAATGATGTGG ATGCTGTTTTCTGTGAGGGACCTATTGACAATGTGACCCAAGGAACTAGCTTATCAGTGTCATTTCCATGGCTCATGTAT CTTTGATTCCATCCATAATGTTTGTAGCAGCACTCAGGCATTTACTGGTTCAGGACCTTTGTTGGTCAAGTTCTATATTT ATCATTGTTAATTATATAAAAATTTTAAGAGATTAGAATGACTTAGTATGGCTTAGTGTTGCATATTGTTAATTGGGCTG TTTGCCGCGTGGCTTTGACTTAGTATTTGTAGTATGTTATAGCGTATTGTATTGTTAATTATGCCGTTGGACTTTTGGCT GTCTTGCAGGCAGAAACTGAAAAACTTTCTTCGGAAGAGCAGAGATTGGATGATCAGATAAGGTAAAGGTTGCTTTGCAA TTGGAAAAGCAGAAATTCCTAGTTTTTTAACTGTTGGCTTAATGCTGATCCTTCTAAAATATTGACAGGGAAATGCAAGA AAAGCTTAGGAGTTTGAGTGAAAATGAAAACAACCAGAAGTAGACTTTTCCAAATTCAGTTTTTAGATTCATTTTTACTT TGCCCTCCCTTTCATAAGAAAAAATAAACGTGTCATTAAGCAATAAGCCTTATAATGATTTTTCAATTCTTGTTAGGTGC CTTTTTGTGACTGAAGAAGATATTAAAGCCGTTCCTTGCTTCCAGGTGTTTTTTCTTTCCTTTTTATGCATTCCACTCCC ACATTATATATTATTATTATGAATATTGCTGTGTTCTCCTTCCATGCTGATAATATTTGAGGTTTTCTTTTATTAATACT AGTGTGTTCCTTCGAGCAGAATGAAACTCTGATAGCAATCAAAGCTCCTCATGGAACTACACTGGAAGTCCCTGATCCTG AGGAAGTAAGTTTAGGGCGTAATTTGCTGAAAGGTTCATGATCTTTTTAAAACTGGTGTTTCTGATGCATGATGGAGAAT TATTGCTTCTGTATGCATCAGGCTGTTGACTATCCACAGCGAAGATATAGAATCATTCTTAGAAGCACGATGGGTCCCAT TGATGTCTACCTTATCAGGTATAACTGCCACTTCTTTTACTATTATTGTTTCCTTTTATGTTAACCATCACTCCATATAG AAATCACACTTTTACTCTGTATTTCATATCATTTGTTTAATAGTTTGCTGGAGTTGTATACTTTGTTGTAGTTTTCTAGT TAATCTATCTAATAATAAATTTTCCATTAATCGTTGTAATTTCTGTACTGCCTCTAGTCAATTTGAAGAGAAATTTGAAG AGATTAATGGTGCTGAGCCCCCCATCAGTCTCCCACTTGCTTCAAGTTCAGGTTCCAATGAGCAGCTAGTGACAGAAACG GTTCCTACTGAATTCAGTGGAATAGGACTTGAGCCTCAAGCTCAGCTCTCTTCTCAAGGGTACTCTGATCTGAATGCTTC ACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGCTGATGTAAGTATATTGTAGTAATGATTGTAAGTTC TATTGGCCAAGTTGGCTTATGGTCCTTTAGTTGTTTTCTCATAATTAGCATTAAGTGCTTGGGATAACAGTCATTCTTTG ATGTAATGCATTGGCACTTACTGATATTTTTGTAATTTTTGTAGAATGATTCAGATTATTGGCTTTTATCAGATGCTGAA GTTAGCATAACAGATATGTGGAAAACAGATGGTATGCTTTTCAATTTTTTTTGTGCCTTTATATTATCCTTTCTACCTTT TCTTCTCCTGCCTTATGTCTTCTTTGTAGTAGTTCATCTAATTCCTTAACTCCAACCAAACAGCTAGTGTTGACTGGAAT GGAGTGGACATGCTTCATCCTGACTTTGGCTTGGTTTCGAGGCCGCAAACTCCATCATCTGGGTTTGCTGAAGCACCACC CACAGCAGCTAACTCTAATCAGAGGTGATTCTGATTTGTCTATTAGTGGTATATCAGAAAATATGGTTTGCCTATCATCC ATTGCACAGAGGGAAACTGCTTCAATAGAGTAATTGCTAGCTTTGTGAATGTTGAGGATGCTGTCAGGAGCTGTGTAAAT GTCAAGCAGGGAGTTTTTGCTGCACTAAATCATTGACTCTGTTATGAATAAACTAGTTATGATGGACATAATATGCTCAT GGAGGATTTAGGTTGGAAGGTAGGGAAGCAGGGACAAGTTTTATTCAGAAAATGTTGCTACTGTATGATTGGAAAGCAGG CTCCATAATCAACATATGGTCATATTATTAGCCATAATTGAAGTCTGTGGCATCGTCGGTTCAATGTTTTTGAAGATGAG AGAAGCTATGTAGATGCTGTGACTTCAAACAATCTACAAGGGTGGACTGGATATTGTTAGGAGATGAACACCTTATTATT AAATTATCATTCATGCATTGTAAACATTTGATAAATATTATGCGAGTAAAATTATGTCAATTATTTTCCCAAATTGCTCC AATGTTTTCTATTTTCTTCTACTCTTAAAATGAAATATGTCGTTTGAGATATTTAATGTGATAAACTTGAACAAGTTATT GACTTGATCATTGACTTGATCATGATACTAGAAGTCATGGCAATGGGTGGGATGGTCGTGAGTAGTACTCCCCC
CDS sequence (LotjaGi5g1v0102600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCAGCACCGCTGGAGCTTCTGACAATCGCGCCACGCCACCGCTCCAACCTCCCAACCGCCCACCACTCAAACGCCA CCTGGCCTTTGCTTCCACCAAGCCGCCATTTGCTCCGCCCGATGATTACCACACCTTTTCCGCCGCCGCCACGACCGCCG CTGGTCCCGATTCTAGGAGAGGCGCCCATCACGAGCCTGAAGCTGTCGTTGTCAGATCTCCGTTCATAAAGCGGAAGAAT GGAATGAATAACAATGAAGGAGACTCACAAAAGTGGGGTAATAGCCCTGGAGGCACTAACGTCATGAATAGTCCTTTTAA AACTCCTGTGTCTGCAAAAGGGGGAAGGACACATAAGTCAAAAGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCA TCTCAAATGCTGGCAAGAATTCCCCCCCTTATTTTTCCTGTTGA
Protein sequence (LotjaGi5g1v0102600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSTAGASDNRATPPLQPPNRPPLKRHLAFASTKPPFAPPDDYHTFSAAATTAAGPDSRRGAHHEPEAVVVRSPFIKRKN GMNNNEGDSQKWGNSPGGTNVMNSPFKTPVSAKGGRTHKSKVSKEGRSCPPTPISNAGKNSPPYFSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 147 | 147 | - | – | |
| PANTHER | 1 | 142 | 142 | 8.2E-55 | – | |
| PANTHER | 1 | 142 | 142 | 8.2E-55 | ||
| MobiDBLite | 58 | 72 | 15 | - | – | |
| MobiDBLite | 78 | 107 | 30 | - | – | |
| MobiDBLite | 129 | 147 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0102600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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