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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0102800 |
Transcript ID | LotjaGi5g1v0102800.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NAD(P)H dehydrogenase (Quinone); TAIR: AT4G27270.1 Quinone reductase family protein; Swiss-Prot: sp|Q9LSQ5|FQR1_ARATH NAD(P)H dehydrogenase (quinone) FQR1; TrEMBL-Plants: tr|A0A072TQ77|A0A072TQ77_MEDTR Quinone oxidoreductase; Found in the gene: LotjaGi5g1v0102800 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:18617269..18620440) extracted from Lotus japonicus Gifu genome v1.2.
CCAAAACAAAAGGGAAACGAAAAGAACAATCGAGAACGCTCAGGCCATGCCATGACAGGGTTCATCTCCGGCGACGGAAG AGACGGTGACTTGCACGGTGGCGGCGGGTGCAGAAAACAACGACGTGGCAGGGGAATGCGTGGCGCACGGTGGCCGGAAT AACTCTCCCTCGGTGGAGAAACGTGCTACCTGCAGCAGCTACCTACAGTAGCAACAATAACAAAGCGATGAACTCTCATC TATTCAACTGCCAAATAACTAACTAACTAACGGCTAACTGATTAACGTAACTGACAAGCTTACTGAACTAACCGCCTAAC TGATTCGATTTTTCTTTTTGGCAGAACAAATTGATGGTCACGCAATTGGTGTGTGCCACTGAATTCAAACTATAAATACG CGTTTTGCTTCCCGCTATTTTCACAAATCACAATCACCAACCGTCAACAATTCATCAGAGAAAGAAAGAATGCAAACACC AGAGCGTAGCAGGAAGAGGCCGAGAGAAGGAGGAGGATCATCTTCAATGGCTGCGGAAGATCAAGAAGGATCATCATCTT CAATGTCTGTGGACGAAGCATCATCATCTTCAATGCCTCCTGTGAGAGTTTTCATAGTGTATGGATTCAATTTTTTCGTT ATTTCTTTCTGATTTGTTCATCTGCTGCTGCGTAATTCTCATGCTTACATTGTGTTTGATTATGATTATTAGGTCAGTTT TATTTGTTGCTGAAGTTCTCTCGATTGATGAGGAATTCAAGTTCAAATACTGATTAGGTCTTGATTATTTGTTTCTTTTA AAGATGAAAAAGGATCTAAAAAATTGAAATGATTTCTTGAATGTTCTAAGATGTTTAGTGAATATCTAATGCATCTAATA GTGATTATGGTTATTAGGTTTTCTGGAACATTGATTATTGCTCAAGACCTCTTGATTGATGAGGAATTCAAGTTCAAATA CTGATTAGATCTTGACCTCTTGATTATTCGTTTCTGAGGAATAGTGAAAATTGGAAATAATTTCTTGAATGTTCTAAGAT GTTTAGGGAATATCTAATGCACCTAATGCTGTAATGTGTCAATTTTTCATTCTATTGTGAGTTCTTGAGCTTGGTTCTGT GATCTTTATTTCACCGATGGAAATTTTTCGATTTCTTTGGCAGGTTTTATCCGATGGATGGTCAAGTGGAGATACTAGCA AGGAGAATACTCGACGGGGTTAATTCTGTACAAGGTGTTGAGGCAAAACTATGGACGGTATGCGTTTGTGTTTTACTTAT CACAGTTCCTAGTCCTATGCATTTCTACATCTTTTGCACACAATGCCAAAATAGAAAATGTTGCCAAAATGGCCAGAGAG ATTATATACATGTAAAGAAGTAGAAAATTAAATCACAAGTAGGAGCAATCCTTGTAGATCACATCTTGTTAATTAGTTCC CCTGCCAAATGTAGATCTCAATTCATAGAATAGTTCAGTTGTAGAATTTGAACCAGTCCTAAAAAACCAAGGCAACAATC CTTGTTCGTTTTGTAACATATTTGTTTATGCATTACCCATTCCTAGGGATTTCTGTGACAATTTGGACAAGATTTGGATG CTTTACATTTCTAACTATTTGTGTTTTCTTTAAGTTTCCTACAATTTAATTGAGTACTCCTTTTAGTTGCTAGCTCTGTC TTTCTTTTGGGAGAGTAGTATGGAAAGGAAAGGACAATTGCCTATGTATGGACATAGGCAACATATACTAGCCTCAGAAC AAAAAACTAGAACAACATATCATCCAACTTAGTCAACCCACTATACTAGCCTCAGATTATAATTTCTCTGATATGATCCT ATTATCAATCTTTTTAAAATTGTTAATGAGGCTTTAGTTTAATGGTTTATGGTCTGTTCAACTGATGCCTATACTCTGTT GTTTCAAATCCACCAATACTGGGTGTTTCCAATGCCTTTTCTCTTCTAATAGGTTCATGTGGTTTGTTTTGTTATACTTT GTAGTCTCTGTGGATAGTTACTTCCCAAATTCATCTTTCTTGCTAAATTTTAGTAAACAATTTTTTGACTTCACTGTGGC TATGAGCAGGTACCTGAGCCACTGCCAGCTGAGCTAAGAGCACCAACCAAGAGTGATGTATCAACCATCACTGCAAACGA ATTCATAAAGGCTGATTGTGTAATCTTGGGCTTCCCAGCAAGGTTTGGAATGATGGCTTCTCAGTTCAAAGCCTTTCTAG AAACTACTGAATCTGATGCGCAAAAAGGCTTTTTTGCATCCAAGCCTGCTGGCATCTTCTACAGCAGCAATACCCCAGGC AGTGGACAAGAGACTGCAGCGTAAGAACACGGATCAAAATCCTCTCATGTAGAAACTTCACATGACAAGTTCATGTCCAA ATTTTGTCTGTTGTTGCGATTCCTTCAATTCATTTAGTTTCTTATTTAAATGACATATTATTAGTACCATAATGTCAACA TGACTATGACAGGCTCACTGCTGTAACTCAGCTGGCTCATCTTGGAATGATATTGGTTCCGATTGGATATCCATCGGATA TTGACATGTTTCAGGGAGGATCACTCATGGAAATGAAAGGTGGAAGTCCATATGGGACAGGAACTTATACTGGTGTTGAT GGCTTTAAACAGCCAACTCCGCGTGAATTGGATTCAGCATTTCGTCAAGGAAAACATACTGCCGAGATCGCAAAGCAGCT CAAGGATTATGGTTTTCAGAGAGTATGTTGAGTTATATTTTTCACTGCATACATGCTTTTACTTTTAGTTATTTTAGAAG CAAATACATGTCTTAACCTCTATTTTTGTGTTGCAGTGTATGGAAGATATCTGGTGATTGATATTTGCTTTACAAGTTTC TTGGTGTTTCTCTCTCATTTATTCGGCCAAGAAATACTTGTTACTGATCCCCTTTCACGAATGTAATGATAGCAGAATGA AAGATTAATCTGCAAGTATGTGTATGCAGTAAACTTCTAATTTCTTGTTACAATACTGTTAGTAGATTAGTTTGTTAGCG TATTGTTAGAAACTGTAGCATTTAGTTACTGAATTAGTTAGTTCAGTAAGTATGAACACTTGTGTGTAAAGAGATGCTAT AGTTTGTTATCAGTTTCTTAATTCAACAAGACGAATTCATTTCAGTTCTTGA
CDS sequence (LotjaGi5g1v0102800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACACCAGAGCGTAGCAGGAAGAGGCCGAGAGAAGGAGGAGGATCATCTTCAATGGCTGCGGAAGATCAAGAAGG ATCATCATCTTCAATGTCTGTGGACGAAGCATCATCATCTTCAATGCCTCCTGTGAGAGTTTTCATAGTGTTTTATCCGA TGGATGGTCAAGTGGAGATACTAGCAAGGAGAATACTCGACGGGGTTAATTCTGTACAAGGTGTTGAGGCAAAACTATGG ACGGTACCTGAGCCACTGCCAGCTGAGCTAAGAGCACCAACCAAGAGTGATGTATCAACCATCACTGCAAACGAATTCAT AAAGGCTGATTGTGTAATCTTGGGCTTCCCAGCAAGGTTTGGAATGATGGCTTCTCAGTTCAAAGCCTTTCTAGAAACTA CTGAATCTGATGCGCAAAAAGGCTTTTTTGCATCCAAGCCTGCTGGCATCTTCTACAGCAGCAATACCCCAGGCAGTGGA CAAGAGACTGCAGCGCTCACTGCTGTAACTCAGCTGGCTCATCTTGGAATGATATTGGTTCCGATTGGATATCCATCGGA TATTGACATGTTTCAGGGAGGATCACTCATGGAAATGAAAGGTGGAAGTCCATATGGGACAGGAACTTATACTGGTGTTG ATGGCTTTAAACAGCCAACTCCGCGTGAATTGGATTCAGCATTTCGTCAAGGAAAACATACTGCCGAGATCGCAAAGCAG CTCAAGGATTATGGTTTTCAGAGATGTATGGAAGATATCTGGTGA
Protein sequence (LotjaGi5g1v0102800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTPERSRKRPREGGGSSSMAAEDQEGSSSSMSVDEASSSSMPPVRVFIVFYPMDGQVEILARRILDGVNSVQGVEAKLW TVPEPLPAELRAPTKSDVSTITANEFIKADCVILGFPARFGMMASQFKAFLETTESDAQKGFFASKPAGIFYSSNTPGSG QETAALTAVTQLAHLGMILVPIGYPSDIDMFQGGSLMEMKGGSPYGTGTYTGVDGFKQPTPRELDSAFRQGKHTAEIAKQ LKDYGFQRCMEDIW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 39 | 39 | - | – | |
MobiDBLite | 21 | 39 | 19 | - | – | |
Gene3D | 41 | 247 | 207 | 1.0E-52 | ||
TIGRFAM | 45 | 241 | 197 | 2.7E-44 | ||
PANTHER | 46 | 243 | 198 | 4.0E-67 | – | |
PANTHER | 46 | 243 | 198 | 4.0E-67 | – | |
SUPERFAMILY | 46 | 242 | 197 | 8.38E-37 | ||
ProSiteProfiles | 47 | 235 | 189 | 13.427 | ||
Pfam | 61 | 182 | 122 | 1.9E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | NAD(P)H dehydrogenase (quinone) activity | Catalysis of the reaction: NAD(P)H + H+ + a quinone = NAD(P)+ + a hydroquinone. | ||
Molecular function | FMN binding | Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi5g1v0102800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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