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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0104100 |
Transcript ID | LotjaGi5g1v0104100.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative; TAIR: AT2G35980.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; Swiss-Prot: sp|Q9SJ52|NHL10_ARATH NDR1/HIN1-like protein 10; TrEMBL-Plants: tr|A0A072VIT5|A0A072VIT5_MEDTR Harpin-induced-like protein; Found in the gene: LotjaGi5g1v0104100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:19366700..19368541) extracted from Lotus japonicus Gifu genome v1.2.
GATTAATCGTGTTTTTTAACCACAAATGTCTTCTATTGAAGCAATCTTGTTCAATTAAGTTATAATAAATGTCAAAAATC TTTTTAAAAATACAACTCTTACGAGTCAAACTCTCAACCTTAAGGGTTGAAACAACCACTTTAATTACAATGATCCACAC CCATCTAAGTAATCAATCATGTTTTTCAATTTATCCAAATAGAATTCCTTTATTCCTAGAAATATCATCCTATAACATTC AACAATCACTTTTTTTTCAGTTGACCATGAAATAGTCTCTTAAAAATATGAAATTGCTAAGATGGTTCCTTCATAAACTT GAGTTGGGGGAGAGTTTCTTTGATGACCAATGACAAATTGAGAGAATGACACTTGGGATTGCTCAATAGGAGCCAGCTGC CACTCATCTTTTGTTTTTGACTCTTGACTGTTTAAAACCCCATAACCTTATCTCTTCTTCACATAGCAAAAACAACTCAC ACTTCAATCTTGTAATTCAATCACAATTCCTCCCATCAACTAACATGACTGACAAGGAGCCACCACCGCCACAACTGAAC CCCGCCGCCGCAATAAACATCCCTCCCCCGGCGGAGCAACCACAACCCCGCCACCACAAAGGCAGAACATGCTGCTACTG CCTCTTCCGCACCTTCTGGATCCTCCTCGCCACCATCCTCCTCTTAGCCTGCCTCATAATCCTCGTGGTATGGATCCTCA TCCAACCCCGTTCCTACACCTTCCACGCCTCCCAAGCCAAGCTCACCGAGTTCAACTACAACTCCACCACCGCCACGCTC CGCCACAACCTCGTCGTCAACTACACCGTCCGCAACCCGAACAAGAAGCTCAAGATATACTTCGACGTCGTGGTGGCTCA CGCGCTCTACAAGGATGTGACGTTCGCCACGACGGACGTCACCATGCCGTGGCGCGCGTCTTATCTTCAAGCCACGAAGA GCACAGTTCCCATGAGCGCTGCTTTCTCCGGGCAGCAAGTGGTGGCGGTGGATCATCAAGATTACATCTCTGATCAGTTC GAGAAAGAGAAAAAAGATGGAGCTTTTGTTATTGATACCAAGATCAACATCGATATTCGGTTCAGGTTGGGAGATTTCCA GTTTGAGGGTCCTAGTGCCAGAGTCAAATGTAAGCTCAAGGTTCCTCCGAGCTCTAATGGTGATGGGAAAACGGTTGCGG TCGTTGCAGATGCTTTTCATCCCACCAAGTGCGATGTTGATTTCTGAGAGATGGTGAAACTATTACACTACCATTTACCG ACTCTCACAGCTCCATTGTTTACAATTGGAGAATGTATGATTTGTGTTCCGCGATTGTAAATGTGGAATATTGGAAATGT GAAAGTCGGTAAATAAGTGGTGTTGATGGTTAACCATTTCTAAAACTTAGGGGGGAGGGGTTGGTCCACTACGCCATTGA CTACGCGCATTTCATTCATTGGGGAAAAGATGAGTACACAGTAGTGGGCAGATAGGTACACGCCGCTTTCTTGTTCCTTT CATTCTTTTTGTAATTTGACTAATTTCCATTGAATCTGCCTTTGTTTTATTCAATTTTTTTATGAATTTTGTTTATGCAT TTGAATAATTATTTTGTAATAATTTATAGTTGTGAAAATGAGTTGTTTTTTTTAAGTTACCGATGTATATATAGTATTCA GTTTGCTACATTTCTGTTAAATGTAATTACTATTTTTTGTAATTAAATTTTTGATATTTTCGGTTAAATTATATGTTACG TTTTTATTTATTATTTATTTTGCAAATTTTTCATAAATAAATGAGGAGGACTCCCTTCACTCCGGGAGTAAGTCCCAAAA GT
CDS sequence (LotjaGi5g1v0104100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGACAAGGAGCCACCACCGCCACAACTGAACCCCGCCGCCGCAATAAACATCCCTCCCCCGGCGGAGCAACCACA ACCCCGCCACCACAAAGGCAGAACATGCTGCTACTGCCTCTTCCGCACCTTCTGGATCCTCCTCGCCACCATCCTCCTCT TAGCCTGCCTCATAATCCTCGTGGTATGGATCCTCATCCAACCCCGTTCCTACACCTTCCACGCCTCCCAAGCCAAGCTC ACCGAGTTCAACTACAACTCCACCACCGCCACGCTCCGCCACAACCTCGTCGTCAACTACACCGTCCGCAACCCGAACAA GAAGCTCAAGATATACTTCGACGTCGTGGTGGCTCACGCGCTCTACAAGGATGTGACGTTCGCCACGACGGACGTCACCA TGCCGTGGCGCGCGTCTTATCTTCAAGCCACGAAGAGCACAGTTCCCATGAGCGCTGCTTTCTCCGGGCAGCAAGTGGTG GCGGTGGATCATCAAGATTACATCTCTGATCAGTTCGAGAAAGAGAAAAAAGATGGAGCTTTTGTTATTGATACCAAGAT CAACATCGATATTCGGTTCAGGTTGGGAGATTTCCAGTTTGAGGGTCCTAGTGCCAGAGTCAAATGTAAGCTCAAGGTTC CTCCGAGCTCTAATGGTGATGGGAAAACGGTTGCGGTCGTTGCAGATGCTTTTCATCCCACCAAGTGCGATGTTGATTTC TGA
Protein sequence (LotjaGi5g1v0104100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDKEPPPPQLNPAAAINIPPPAEQPQPRHHKGRTCCYCLFRTFWILLATILLLACLIILVVWILIQPRSYTFHASQAKL TEFNYNSTTATLRHNLVVNYTVRNPNKKLKIYFDVVVAHALYKDVTFATTDVTMPWRASYLQATKSTVPMSAAFSGQQVV AVDHQDYISDQFEKEKKDGAFVIDTKINIDIRFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 29 | 29 | - | – | |
MobiDBLite | 1 | 26 | 26 | - | – | |
Phobius | 1 | 43 | 43 | - | – | |
PANTHER | 29 | 238 | 210 | 3.1E-73 | – | |
PANTHER | 29 | 238 | 210 | 3.1E-73 | – | |
TMHMM | 44 | 66 | 23 | - | – | |
Phobius | 44 | 66 | 23 | - | – | |
Phobius | 67 | 240 | 174 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0104100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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