Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0106500 |
| Transcript ID | LotjaGi5g1v0106500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT3G52380.1 chloroplast RNA-binding protein 33; Swiss-Prot: sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic; TrEMBL-Plants: tr|K7LI32|K7LI32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20120501..20125732) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAGATAATAAAGATGGGGAAAAACTTGGTTTTTTTTCCTGTGTCCAAATCTATCAAACCAAGTCTCTATTTATAGAG AAAAAAAAGTTATGAATTTTGGTAAAAAAAAAAAAAAAAAAAAAAACATTTTCAACAAGATAATTCAGTTTAAAGTTTTT TTAAAAAAAAAATCCGGCTGGCCAATGGGACGCTGCCACGCGTCCCATCCTCACCCACTCGGTCTTCTCTCTCCTCTCCC ACTGACACGCCACGCGCCTTGTCGGCGCGTGTCGTGCACGCGCCCTGCTGGCTCCAATCCGGAGCTGCCACGTGGCTCCG GAGGCTCCTCTCAACATTGTTGAACCGGTTCAACATTTTGGCACTTTCAACAGCTTTCAACCAACCATTGCATGGGTTCA ACAACTCTCAACATGTTTCAACATGGCATTCAACATGCCATTGTACATGGTCTAAGTGTTTCCCTCACCCTCAATGGATT CCACTCTTTTTGCCGTGGGATCTCGCCCAGTCCACATAGGAAAAAGTAATAAAAACCGGAAACAAATCAAATATGGTTGA AGTTTATGCCGTCTGAAATTCTTCCATGGCTGCCACAGCTACTCCTTCCTTCCCTATCTGCAAACAACTCTATTTCACTC CTTCTTCCATTCCACTCACCCTTAACATCCCACACAGACCCAAACCCCCAAAACCCCTCAACCTTAAACCCAAGCTCTTC AGCCCTTCTTCTCTCTCACTCTACCGTTTCCACCTACCTTCAGTGTCGTTTCATGGATTCCAAGAGACTGAAGAAGAACC TGAATCTGAAACCTTCCAAAATTCAGAGCCAAAGGTGTCACACTCAAACCAATCAAGGAGGCTCTTTGTGGGAAACTTGC CTTACTCATTGTCTTCCTCTCAGTTGGCTCAGCTCTTCGGAGAGGCTGGTGATGTTGTCTCTGTGGAGGTTTGTACATGA TTCTCGTTATTTAGTCTTTTTTCTGAAGGCCCTTTTCAGTTTTTGTAATCTTTTTCTTGTTTGATTGATAAAGTTAGGAT TTTTTGTTTTTGTTTTGGGGTGTTATGATAATCTAGTTTTGGTTTGTGTTCGTGACTACTTTGTTTGATTGAACTATGTA GGTTGTGTGCGATGACTTTACGGATAGAAGCAGAGGATTTGCGTTTGTTACGATGGGGAGTGTGGAGAATGCTGAACAAG CAATTCAAATGTTTGATGGCACTGTAAGTCTCATAAGCTGAAACCTTGATTTTCATATGAGTGTGCTCTTTCATTTGAAA CTACTATTCTATATCTATGTTCTAATATAATATTGTAGATAGTGATGATGGAGCTGGAAACAACCAGAATAAATTTCTGC ACTATCAAAACCTGGTTATAGATTGTTTAGAGTTCCAGTTTTAGTTTTTGTTGCCTCGTTATATCAAATTGGATGGTAAT TTATTAATCTATTGTTGATTGTGAAGATGGAGGTGGACATAGAGACCAGAATGATTTGGTGCTTAACCTGGCATTGATTA TAAATTTTAGTCAGTTCCTTATTTTCTTGTCTTTGTTATCATTTTGGGTGGTAATTTAGTCTTCTCGTAGATATTTATTT TCTTTTATCCGTTTTGGGTCTTGATTTAGGACATATCTTATAAAAAACTACAGCCAGCCATCTAAGACCTTTTATCCTAA CTGGCTTTCTTATCCGAATTACCATGATTCAACTGTTTGCTACATTGTACAAGCAAGCAGAGTTTAATTGAAATAGTAAT GGCTATCATGGTGAACAGCAAGTTGGAGGTAGGAATATTAAGGTAAACTTCCCTGAAGTTCCAAAAGGAGGCAAAAAGCG AATGACGGGTTCAAACTATAGTGTCTACGTAGATAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTGGGGTCTGGCTT CCCAGGGCCTTAGAGACGCTTTTGCTGAGCAGCCGGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGAACAATGGAAAA TCTCGAGGATTTGGGTTTGTCTCTTTTGAAACTGCTAAAGATGTAGAGGCTGCTTTAAATGCTATGAATGGTGTGGTATG AATAATTTTGAGGATTTTTGTGTAACTTTGGGTTCATCTTGTGATATATCAATCTGACTATGAAACCACTTTCTTTGTAT GCGTAATATGCTGTTTCCAGGAGGTTCAAGGCAGGCCCTTACGACTCAATCTGGCTGCAGATAAGAAGCCTATATCTCCT TTTGTAATTGATGAAATGGAAGAGAGTAACGTTGATAGGTTGGAAATCCTGTTTGGTGTCAGCACATGAGGTATATGATT GATTGTTATTTTTATTTTTTTGCTTTTTTGCCATTAACAATGCACACATCTGCTTTTAACTTTGTCTACAGTGGTCCTCG TGTCAGATTTCTAGTCAATTACTAATTTATTAGTCACACTTACACTAACAATAACTTTTGCGAGATGTATGAGTGTTATT GAACAAATACTTGACATATATAACAGATTGGTGTTAACTTTGTTGCTTCAATGTTATTAGTATACAATGACAGTATAAAG CATTCCAAAAACAACAATGACAGGGTAAACAGTTTTACATTGACATCCAATCAATTCTCTGTCTTGCCTTTTTTTTTTAA TTTAATTATATGATGTGCCAAGACAGGGAAATCTAATTGGATTTCTATGTAGAAAAAAATTTACACTGTCAGTAGGGGAT ACGTTACATGTCAACTACAATTAGTTAGAAAATGACCTACTTTACAAACAAAGGGAAGGTTGTTTTCCGGGAACCTTGCA ACCTTGTGGTTCCTATTAACCAGCAGCATCGGCCTGGTAACCTTTGTCACCGGTTCCTGCAACGCAATCGACACCTTTTT TTTATTATATCCTTTCTGAAGGGCTTGCGATTCATTACACACTAAAGGCCTTCAGTGAACTATTGAAGCTATCAAGATAT TACCAAATGCTGATGAAGGTTACCGACTTTCGGCGGCCGCGAAGCCAATGCGTCTTTAAGTAAGTGAGCATTAAGCGGCA AGACTCTAAATTTGTAATTGAAGCGAAGGTAATATAGATATTTTATGCAGTCCCTGGGAGAAGTAATGAACGCAGTATCA AAGGCCAATGGTGTCATCATTTTTTTTTAAGGGAAATAATTTACAATCACCCCAAACTTTATGGTTTTTGTGAATAGGCA CCTTCAACTTTCACTTCATCCTAACTACTCCTCAAACTTTAAACTATTTTTGCAATAATAGTCTTTTTTTAAGTTAGGAT TTTGAAATTCCATTGCTTTCCTTGTTGGGTCTGTTAGATGAGCTTGAGCTGTTCATAAGTCGACCCAACAACTAGAAGTG AAGCTCAATTGTGCAATGGTGGTCTTGTGACTTGATGGGAAAGAGGAAAAACAATGATGAATTTCAGCTGGCTCTTTTAT GGCTGTCCAAGGTGGAAGGAATCAGGTGCTTCTAAATTTGTGAGCTGACACTTCACAATTGTCTGAAGTTGAGAAACCAA GCAACAGCCAAACATCGGATCAAACGAAAGAAATTTTATGAGCTTTTAGAGAAAACTCGGAGACTGAATGCTGAAGTAAC TCGAAACAAAGAGAGTTTAGGTGTGTTGTATCCGTTGACGACTTGGATTTTTGTAGGGTATTTCATTATCTTTTCATTTC ATGTTTGATGTAGTGTATGAAATTGTAGTTTGTTGTGAGTTTAGGTGAATCAATGTCTACGAGAGTTTAGCTGTCATAGG TCTGAATTTTGATGGATTTTGGCTTTAATGTGATTCTGGAAACTGTGATATGTTGCTTTAATATAAATGTCTAAATTTTT AGGCATTTTAGATCTCTAAATTGGTGGTAGTAATTTGCTTGTTTACCCTATGGCCTTGGGTTTCCAGTCTAGGCTTCAAT CGATCAGTTTAGTTGATTTATACTTTTCTTGTATCTATATGTAATGTGGTTTCCGACACCCAGTACCAAACCTGATCTGC ATATTGCATTGATTTTCCCTTGATTAATGATATAAGAAATGTTTGTTGAGTCAAGGCTGATTCCAAGTTCCTACTATTCC TTCTTTTGTTTCCCAATATTACATGTATACTGGTTTATGCTAGTATATGTGGGTTTATTGTGCAATTACCTGCCTTTATA CTGGTTTATAATGTAATGTACTTATATGTACAGACTTGTAATGCAATTACATGTATTTATGTTGATTTATACTAGTATGT AGTTAAGGGTGTTTATATTTAAATTAGTTGGTGCCTAAGGATCTTATAAAACCGAGTGACCAAGTATTAAGGGTTGTCAA AATTGAATTACAGCTGTTGATATCAATGATCTATTTCCAGTCTTCCAGAGTTGTGAAGTGTGTATTGTGTCTGGTTCCAA GTTTAATCAGTTGAGCCTGGAAGGTAGCCAACTACACACTGAGTTCATGTTTGGATTCACGTTCAAGTCTTTCAGAATCA GTTCTCCTCCCACAAAAACTGCTAGGAGTAACTTCTCTAAAATCAATTATGCTTCTACTGTGAAAATTTACCTGTATCCA AACATGATTGAATTCTGAAAAAATTGGTGCCTCCAAGGTGAACTCAAGGCATTTACAGAACATACCTTATGGCTTTGCTC CTAGACCCTGTAGTTCTCAACATTCTTATTCAAATGAAAACGAAATTGCCAACAGGTTGCAGTGGAAGTTGGTACAACAC AATGCAATGACTGCAAAAGTGTTCAATGCATTCATACCATGGTTGTACCAAAACAGTATTGGACTATTAGCATCTTAAAC TACAATTTATTGATCACACATGGAATTCTACCAATAAAAAAGTGCTGGAAAAAGTGTTAGTGAGTGGTTATAGCGTTTCT CTTGTACACAATCCAGCTTTATGATTGCTCTGTATGATGTCATGACCCCAATGAGAAGGGTGTTTTCTATTTTTGATCAA CAGAAGGCTTTTTATAGTCAACAGAAGGGTGTTGTTTTGTCAATAGTAGGGTACTTTCTTTTTTTTGTCAAGGTCAATAG TATTTTTCATTGAAGCTGAAAGTATACATGAATCAATGGACTCTTCTTACACGTATCGTGTGTTTGAATAGAATAAGATT GCTTGACCAAAAATAAGAATAGAATAAGATTGTGATGATGAAATAACTGAGCAGCCTAAAAATAATCAACGTGCTGTAGT ATTATATAATTTGTGTAGCCGCCATGGCTGAC
CDS sequence (LotjaGi5g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCACAGCTACTCCTTCCTTCCCTATCTGCAAACAACTCTATTTCACTCCTTCTTCCATTCCACTCACCCTTAA CATCCCACACAGACCCAAACCCCCAAAACCCCTCAACCTTAAACCCAAGCTCTTCAGCCCTTCTTCTCTCTCACTCTACC GTTTCCACCTACCTTCAGTGTCGTTTCATGGATTCCAAGAGACTGAAGAAGAACCTGAATCTGAAACCTTCCAAAATTCA GAGCCAAAGGTGTCACACTCAAACCAATCAAGGAGGCTCTTTGTGGGAAACTTGCCTTACTCATTGTCTTCCTCTCAGTT GGCTCAGCTCTTCGGAGAGGCTGGTGATGTTGTCTCTGTGGAGGTTGTGTGCGATGACTTTACGGATAGAAGCAGAGGAT TTGCGTTTGTTACGATGGGGAGTGTGGAGAATGCTGAACAAGCAATTCAAATGTTTGATGGCACTCAAGTTGGAGGTAGG AATATTAAGGTAAACTTCCCTGAAGTTCCAAAAGGAGGCAAAAAGCGAATGACGGGTTCAAACTATAGTGTCTACGTAGA TAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTGGGGTCTGGCTTCCCAGGGCCTTAGAGACGCTTTTGCTGAGCAGC CGGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGAACAATGGAAAATCTCGAGGATTTGGGTTTGTCTCTTTTGAAACT GCTAAAGATGTAGAGGCTGCTTTAAATGCTATGAATGGTGTGGAGGTTCAAGGCAGGCCCTTACGACTCAATCTGGCTGC AGATAAGAAGCCTATATCTCCTTTTGTAATTGATGAAATGGAAGAGAGTAACGTTGATAGGTTGGAAATCCTGTTTGGTG TCAGCACATGA
Protein sequence (LotjaGi5g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATATPSFPICKQLYFTPSSIPLTLNIPHRPKPPKPLNLKPKLFSPSSLSLYRFHLPSVSFHGFQETEEEPESETFQNS EPKVSHSNQSRRLFVGNLPYSLSSSQLAQLFGEAGDVVSVEVVCDDFTDRSRGFAFVTMGSVENAEQAIQMFDGTQVGGR NIKVNFPEVPKGGKKRMTGSNYSVYVDSPHKIYAGNLGWGLASQGLRDAFAEQPGFLSAKVIYERNNGKSRGFGFVSFET AKDVEAALNAMNGVEVQGRPLRLNLAADKKPISPFVIDEMEESNVDRLEILFGVST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 58 | 166 | 109 | 4.2E-28 | ||
| MobiDBLite | 65 | 88 | 24 | - | – | |
| PANTHER | 75 | 274 | 200 | 4.1E-86 | – | |
| PANTHER | 75 | 274 | 200 | 4.1E-86 | – | |
| SUPERFAMILY | 89 | 269 | 181 | 2.32E-47 | ||
| ProSiteProfiles | 91 | 169 | 79 | 19.655 | ||
| SMART | 92 | 165 | 74 | 2.3E-26 | ||
| SMART | 92 | 165 | 74 | 0.0073 | ||
| CDD | 92 | 168 | 77 | 1.12322E-32 | – | |
| Pfam | 93 | 163 | 71 | 2.0E-22 | ||
| Gene3D | 169 | 273 | 105 | 1.1E-21 | ||
| ProSiteProfiles | 190 | 268 | 79 | 16.909 | ||
| SMART | 191 | 264 | 74 | 5.2E-21 | ||
| Pfam | 192 | 262 | 71 | 6.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0106500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…