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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0106500 |
| Transcript ID | LotjaGi5g1v0106500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT3G52380.1 chloroplast RNA-binding protein 33; Swiss-Prot: sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic; TrEMBL-Plants: tr|K7LI32|K7LI32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0106500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20121727..20125263) extracted from Lotus japonicus Gifu genome v1.2.
CTCAATGGATTCCACTCTTTTTGCCGTGGGATCTCGCCCAGTCCACATAGGAAAAAGTAATAAAAACCGGAAACAAATCA AATATGGTTGAAGTTTATGCCGTCTGAAATTCTTCCATGGCTGCCACAGCTACTCCTTCCTTCCCTATCTGCAAACAACT CTATTTCACTCCTTCTTCCATTCCACTCACCCTTAACATCCCACACAGACCCAAACCCCCAAAACCCCTCAACCTTAAAC CCAAGCTCTTCAGCCCTTCTTCTCTCTCACTCTACCGTTTCCACCTACCTTCAGTGTCGTTTCATGGATTCCAAGAGACT GAAGAAGAACCTGAATCTGAAACCTTCCAAAATTCAGAGCCAAAGGTGTCACACTCAAACCAATCAAGGAGGCTCTTTGT GGGAAACTTGCCTTACTCATTGTCTTCCTCTCAGTTGGCTCAGCTCTTCGGAGAGGCTGGTGATGTTGTCTCTGTGGAGG TTTGTACATGATTCTCGTTATTTAGTCTTTTTTCTGAAGGCCCTTTTCAGTTTTTGTAATCTTTTTCTTGTTTGATTGAT AAAGTTAGGATTTTTTGTTTTTGTTTTGGGGTGTTATGATAATCTAGTTTTGGTTTGTGTTCGTGACTACTTTGTTTGAT TGAACTATGTAGGTTGTGTGCGATGACTTTACGGATAGAAGCAGAGGATTTGCGTTTGTTACGATGGGGAGTGTGGAGAA TGCTGAACAAGCAATTCAAATGTTTGATGGCACTGTAAGTCTCATAAGCTGAAACCTTGATTTTCATATGAGTGTGCTCT TTCATTTGAAACTACTATTCTATATCTATGTTCTAATATAATATTGTAGATAGTGATGATGGAGCTGGAAACAACCAGAA TAAATTTCTGCACTATCAAAACCTGGTTATAGATTGTTTAGAGTTCCAGTTTTAGTTTTTGTTGCCTCGTTATATCAAAT TGGATGGTAATTTATTAATCTATTGTTGATTGTGAAGATGGAGGTGGACATAGAGACCAGAATGATTTGGTGCTTAACCT GGCATTGATTATAAATTTTAGTCAGTTCCTTATTTTCTTGTCTTTGTTATCATTTTGGGTGGTAATTTAGTCTTCTCGTA GATATTTATTTTCTTTTATCCGTTTTGGGTCTTGATTTAGGACATATCTTATAAAAAACTACAGCCAGCCATCTAAGACC TTTTATCCTAACTGGCTTTCTTATCCGAATTACCATGATTCAACTGTTTGCTACATTGTACAAGCAAGCAGAGTTTAATT GAAATAGTAATGGCTATCATGGTGAACAGCAAGTTGGAGGTAGGAATATTAAGGTAAACTTCCCTGAAGTTCCAAAAGGA GGCAAAAAGCGAATGACGGGTTCAAACTATAGTGTCTACGTAGATAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTG GGGTCTGGCTTCCCAGGGCCTTAGAGACGCTTTTGCTGAGCAGCCGGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGA ACAATGGAAAATCTCGAGGATTTGGGTTTGTCTCTTTTGAAACTGCTAAAGATGTAGAGGCTGCTTTAAATGCTATGAAT GGTGTGGTATGAATAATTTTGAGGATTTTTGTGTAACTTTGGGTTCATCTTGTGATATATCAATCTGACTATGAAACCAC TTTCTTTGTATGCGTAATATGCTGTTTCCAGGAGGTTCAAGGCAGGCCCTTACGACTCAATCTGGCTGCAGATAAGAAGC CTATATCTCCTTTTGTAATTGATGAAATGGAAGAGAGTAACGTTGATAGGTTGGAAATCCTGTTTGGTGTCAGCACATGA GGTATATGATTGATTGTTATTTTTATTTTTTTGCTTTTTTGCCATTAACAATGCACACATCTGCTTTTAACTTTGTCTAC AGTGGTCCTCGTGTCAGATTTCTAGTCAATTACTAATTTATTAGTCACACTTACACTAACAATAACTTTTGCGAGATGTA TGAGTGTTATTGAACAAATACTTGACATATATAACAGATTGGTGTTAACTTTGTTGCTTCAATGTTATTAGTATACAATG ACAGTATAAAGCATTCCAAAAACAACAATGACAGGGTAAACAGTTTTACATTGACATCCAATCAATTCTCTGTCTTGCCT TTTTTTTTTAATTTAATTATATGATGTGCCAAGACAGGGAAATCTAATTGGATTTCTATGTAGAAAAAAATTTACACTGT CAGTAGGGGATACGTTACATGTCAACTACAATTAGTTAGAAAATGACCTACTTTACAAACAAAGGGAAGGTTGTTTTCCG GGAACCTTGCAACCTTGTGGTTCCTATTAACCAGCAGCATCGGCCTGGTAACCTTTGTCACCGGTTCCTGCAACGCAATC GACACCTTTTTTTTATTATATCCTTTCTGAAGGGCTTGCGATTCATTACACACTAAAGGCCTTCAGTGAACTATTGAAGC TATCAAGATATTACCAAATGCTGATGAAGGTTACCGACTTTCGGCGGCCGCGAAGCCAATGCGTCTTTAAGTAAGTGAGC ATTAAGCGGCAAGACTCTAAATTTGTAATTGAAGCGAAGGTAATATAGATATTTTATGCAGTCCCTGGGAGAAGTAATGA ACGCAGTATCAAAGGCCAATGGTGTCATCATTTTTTTTTAAGGGAAATAATTTACAATCACCCCAAACTTTATGGTTTTT GTGAATAGGCACCTTCAACTTTCACTTCATCCTAACTACTCCTCAAACTTTAAACTATTTTTGCAATAATAGTCTTTTTT TAAGTTAGGATTTTGAAATTCCATTGCTTTCCTTGTTGGGTCTGTTAGATGAGCTTGAGCTGTTCATAAGTCGACCCAAC AACTAGAAGTGAAGCTCAATTGTGCAATGGTGGTCTTGTGACTTGATGGGAAAGAGGAAAAACAATGATGAATTTCAGCT GGCTCTTTTATGGCTGTCCAAGGTGGAAGGAATCAGGTGCTTCTAAATTTGTGAGCTGACACTTCACAATTGTCTGAAGT TGAGAAACCAAGCAACAGCCAAACATCGGATCAAACGAAAGAAATTTTATGAGCTTTTAGAGAAAACTCGGAGACTGAAT GCTGAAGTAACTCGAAACAAAGAGAGTTTAGGTGTGTTGTATCCGTTGACGACTTGGATTTTTGTAGGGTATTTCATTAT CTTTTCATTTCATGTTTGATGTAGTGTATGAAATTGTAGTTTGTTGTGAGTTTAGGTGAATCAATGTCTACGAGAGTTTA GCTGTCATAGGTCTGAATTTTGATGGATTTTGGCTTTAATGTGATTCTGGAAACTGTGATATGTTGCTTTAATATAAATG TCTAAATTTTTAGGCATTTTAGATCTCTAAATTGGTGGTAGTAATTTGCTTGTTTACCCTATGGCCTTGGGTTTCCAGTC TAGGCTTCAATCGATCAGTTTAGTTGATTTATACTTTTCTTGTATCTATATGTAATGTGGTTTCCGACACCCAGTACCAA ACCTGATCTGCATATTG
CDS sequence (LotjaGi5g1v0106500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCCACAGCTACTCCTTCCTTCCCTATCTGCAAACAACTCTATTTCACTCCTTCTTCCATTCCACTCACCCTTAA CATCCCACACAGACCCAAACCCCCAAAACCCCTCAACCTTAAACCCAAGCTCTTCAGCCCTTCTTCTCTCTCACTCTACC GTTTCCACCTACCTTCAGTGTCGTTTCATGGATTCCAAGAGACTGAAGAAGAACCTGAATCTGAAACCTTCCAAAATTCA GAGCCAAAGGTGTCACACTCAAACCAATCAAGGAGGCTCTTTGTGGGAAACTTGCCTTACTCATTGTCTTCCTCTCAGTT GGCTCAGCTCTTCGGAGAGGCTGGTGATGTTGTCTCTGTGGAGGTTGTGTGCGATGACTTTACGGATAGAAGCAGAGGAT TTGCGTTTGTTACGATGGGGAGTGTGGAGAATGCTGAACAAGCAATTCAAATGTTTGATGGCACTCAAGTTGGAGGTAGG AATATTAAGGTAAACTTCCCTGAAGTTCCAAAAGGAGGCAAAAAGCGAATGACGGGTTCAAACTATAGTGTCTACGTAGA TAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTGGGGTCTGGCTTCCCAGGGCCTTAGAGACGCTTTTGCTGAGCAGC CGGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGAACAATGGAAAATCTCGAGGATTTGGGTTTGTCTCTTTTGAAACT GCTAAAGATGTAGAGGCTGCTTTAAATGCTATGAATGGTGTGGTATGA
Protein sequence (LotjaGi5g1v0106500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATATPSFPICKQLYFTPSSIPLTLNIPHRPKPPKPLNLKPKLFSPSSLSLYRFHLPSVSFHGFQETEEEPESETFQNS EPKVSHSNQSRRLFVGNLPYSLSSSQLAQLFGEAGDVVSVEVVCDDFTDRSRGFAFVTMGSVENAEQAIQMFDGTQVGGR NIKVNFPEVPKGGKKRMTGSNYSVYVDSPHKIYAGNLGWGLASQGLRDAFAEQPGFLSAKVIYERNNGKSRGFGFVSFET AKDVEAALNAMNGVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 63 | 175 | 113 | 1.7E-28 | ||
| MobiDBLite | 65 | 88 | 24 | - | – | |
| PANTHER | 75 | 254 | 180 | 1.9E-77 | – | |
| PANTHER | 75 | 254 | 180 | 1.9E-77 | – | |
| SUPERFAMILY | 89 | 254 | 166 | 1.71E-43 | ||
| ProSiteProfiles | 91 | 169 | 79 | 19.655 | ||
| SMART | 92 | 165 | 74 | 2.3E-26 | ||
| SMART | 92 | 165 | 74 | 0.0073 | ||
| CDD | 92 | 168 | 77 | 2.40205E-33 | – | |
| Pfam | 93 | 163 | 71 | 1.5E-22 | ||
| Gene3D | 176 | 255 | 80 | 1.1E-15 | ||
| ProSiteProfiles | 190 | 255 | 66 | 13.925 | ||
| SMART | 191 | 255 | 65 | 4.6E-8 | ||
| Pfam | 192 | 253 | 62 | 1.1E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0106500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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