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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0109300 |
| Transcript ID | LotjaGi5g1v0109300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerases I, II, and III subunit RPABC3; TAIR: AT3G59600.1 RNA polymerase Rpb8; Swiss-Prot: sp|Q9M1A8|RPB8B_ARATH DNA-directed RNA polymerases II, IV and V subunit 8B; TrEMBL-Plants: tr|I3T9W4|I3T9W4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0109300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:20880075..20882203) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTGAGATTCTCTTCGACGATATCTTTAGAGTGGAAAAATTGAACCCAGATGACAAAAAATTATTTGAGAAAGGTAT TATTATTATTATTTGTCATGCGTATTTTTCAATTTTGTCTGTATGTCGGCTCAGTTTAACTGGCTCTGCTTTATTATTCC TGAATGACGAAAGAAGATTCTTGTTCTCATGTTTGTATATTGTTGTTATTGTCATGATAAAGAGTGGAAGACTTAAGCTT TAGTTCAAAAGATGAAGCTGATGGCAAGGCACCCCTTTGTAATGCTTGTCTTACTGTAAAACTAAATTCTCATTTTTTAG AGCTTGCTGTTTTTAGTTGCATTCCCTTTTTATGGTACATGTCCTTTTTTCTTCTGTATCTTGTGTTCCATCTGCTTTCT CGTAGACTGGGAGGATTAAGATGATGAGTGGGATTATTTTCTCCTGTTAGTGACATGTAACTTTGTGCTTTGTATTTTCT TCTAATGCTTTGATTTGCTTCTGAAGTTACACGCATTGAAGCGAGAAGTGAAAGGTTTGACATGTTTATGCACCTAGACA TCAATTCTGAGTTATATCCATTAAAGGTGGGTCAGAAGTTCGCTCTATTATTGGTTCCGACACTGAATCCAGATGGCACC CCAGACACTGGCTACTATGTTCCGGTAATTAGTTTATTCTTTTTCTTGTAACCTACTAGAACTAGAGTGGAAATAAATGA CAAGGATCAGGGTCAAAGGTTAAGAGTACATCAACGATTACCCCGGTGTTTGAATGACCTGGAACTCCTTCCAACTATTC CCCAAAATATCTGATAACCTGTAATTCTCTACCATTTTCTTTGTAGCCAATCTCTGTCAATTCTGTTAGATTTGAATTTC TAGACTATTGCAGCTCATGGTTGGTTTTGAAAAATTTACTGGCAAATGTAGCTAATGTTGGTCCAAACATGGGTGCTGAA TAAGTGCCTTTTATTTATTGGATTTACTTGAATATGGGTTGTGAACATGATGGAGCATGTTTTTGTCTGAATATTTTGGC ATTGCAACTATGCACTTGACATCAGATATCTAAGGAGCTTAGTTTTTGTAGGTTCATGTAAAACCTGTTCTAAGTGCCCT GGACCAAGCAATAACTACTATATGAAATGATTATAGGGTGATCTAGTGTTATTAGCTCATGAACAGGTTTTCCATGTAGG ATAAAAGACCTGATCATTAAAATGTAGCTCTTAAGTCTTAAGAGATTCAGTAGAGAAGGATGGGGGCTAGAGGTGTGAAA TGTAAAAAATAAAATTACTACTGCACAGTTGTCAAAGTAGTGTGAAAAAAGTACGTGTGGTAGTAACAGTAGTGTAGTCT GTATGTCCAATTTATAAGTATAGTTCCCTTTGCCCTTCATTTTTCTTTTTATGTTTGCCTTCCTTTTTCCCTGGTTTGTC AAGTCCCTTCAGGTCCAACCATGTGTAAATCAGAAATCCTAGATTTGCCTAACAGAACTCTGCTGCTTGTTTCTTCCCCA GGGAAATCGGCAATCACTGGCCGATAATTTTGAATATGTCATGTATGGGAAGCTCTACAAGATATCAGAAGGTTCTGGGC GTGAAAAAGCGTATGTCCATTACCTGTTTTGAGTAGCAGATTACAGAAATTTCTATTTAGTTTCTGCATGACATGTATGT TTTGCTCATTAACCCTTAAGAGGCTAGTGATTGGGGGCTGTGGACATTCTTTCCTTGAGATATATATGAATTATCAAGAG CATGAATGAATGAAACGTGTGTAGTTTATATGTTACAATAGGCACATGTTGTTTCCAAGTGTCAGAGTTCACTAATTAAA GATGGAAATTGTCATGATATCATTTATTTTTTGCAGTGCTAATCAGTGGTTGTTATTTCCTAGTAGCAGCTGTCCAATTA GTGATGAACGTGATCATCGTTACACTATAATTTGATGTTGTAATATACTTTATGGTTTCCCCCCTTATTAGTCTTGATTT TTGGCTTTGAATTGTAGGGAGCTGAATATTTCATTTGGTGGGCTTCTAATGATGATGAAGGGAGATCACTCTCATTGCAA CAAGTTTGAGCTTGATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA
CDS sequence (LotjaGi5g1v0109300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGAGATTCTCTTCGACGATATCTTTAGAGTGGAAAAATTGAACCCAGATGACAAAAAATTATTTGAGAAAGTTAC ACGCATTGAAGCGAGAAGTGAAAGGTTTGACATGTTTATGCACCTAGACATCAATTCTGAGTTATATCCATTAAAGGTGG GTCAGAAGTTCGCTCTATTATTGGTTCCGACACTGAATCCAGATGGCACCCCAGACACTGGCTACTATGTTCCGGGAAAT CGGCAATCACTGGCCGATAATTTTGAATATGTCATGTATGGGAAGCTCTACAAGATATCAGAAGGTTCTGGGCGTGAAAA AGCGGAGCTGAATATTTCATTTGGTGGGCTTCTAATGATGATGAAGGGAGATCACTCTCATTGCAACAAGTTTGAGCTTG ATCAAAGGTTGTATCTTCTGATGAGGAAAGTCTGA
Protein sequence (LotjaGi5g1v0109300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPTLNPDGTPDTGYYVPGN RQSLADNFEYVMYGKLYKISEGSGREKAELNISFGGLLMMMKGDHSHCNKFELDQRLYLLMRKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 144 | 144 | 1.3E-47 | ||
| PANTHER | 1 | 144 | 144 | 1.3E-59 | ||
| SMART | 2 | 143 | 142 | 1.4E-64 | ||
| SUPERFAMILY | 3 | 143 | 141 | 5.48E-42 | ||
| Gene3D | 6 | 144 | 139 | 6.1E-51 | – | |
| Pfam | 7 | 143 | 137 | 9.7E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi5g1v0109300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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