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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0113100 |
| Transcript ID | LotjaGi5g1v0113100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TNF receptor-associated factor family protein; TAIR: AT3G11950.1 TRAF-like superfamily protein; Swiss-Prot: sp|Q54FD5|Y0931_DICDI TNF receptor-associated factor family protein DDB_G0290931; TrEMBL-Plants: tr|K7KG72|K7KG72_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22512324..22519384) extracted from Lotus japonicus Gifu genome v1.2.
CGAGAGGGAATTGATTGACGTACACTTGTTTTCTGTCATTAACTTTTAGTGAAAATTCTTGAGTGGTTATCTTGAGTGTT AGGAGATTCTTGTGTTTTGGAGCGGAAGCTAGATCTTGAAGCTTAGGATTTTTGAAAAAGCGATTAATTTTCTAAGGATA CGAAGTACGATAATGCGTTCGTGTTGGAGCTAAAGAATCGAAGAAAAGCTAGCCGGTACAAGGAGCGATGACGTGATTGG ATCGAAGTCGCAACTTAGGAAAGAAAGTGGCTAAGGTAAGGGTAACTCGGTTTTAGCGCGTTTTTGAGTCTTGCATGCTT TTATCGCACTGCATGCGTTTGAGATGAAAGTGTTTAATTTGATTGACAATTGATTGAAATATTGGTATGCTTGCTATGTT GTATACTTGCTTATGTTGAATGTTTTCTGAGACTTGTGTCAAATGTTTTCTAAGGCTAAGGTCGTTGTTAAACAATAGAG ACATGCGTCTCCGTTTCCTAGGCTTCGGCCATTGGTTATTGTTGAAATTATGAATAACATGTGGTTATTCTAAGTTGATT ATTGGTTTGGAAATTGTCGTTGACTGACTTGGCATATTGGGAAAGTGGCAATGAGGTGGGTGTGGTCCCACGTGATTGTC CCGTCTTTCTAGGCGTTATAAAGTGGCGATGAGGTGGGTGTGGTCCCACGCGATTGTCCCGTCCATAGTGACGCTAAGTG GCGATCAGGAGGTGTGGTCCTATGATTGTCTCGTCTTGTGTGACACTTAAGTGGCGATCAGGAGGTGTGGTCCTATGATT GTCCGTCATGTATGACGCTATAAGTGGCGATGAGGAGGTGTGGCCCTATCATTGTCTCGTCTTGCGAGACGTTATTGATC GATCCATTTTTTTGGTAGCGGCATATAGTTGCATTATAGGGAACTAACATCTCACCCTATGTTGTTAAATTAAACTATGA TTTTAATTATCATGTTTTGTAATTGAGTTTCAACAGCATGCTTTTCTCTTTTATATGTAGTAATTGCATGGAGTTAACCC TTTCTGTTTACTACTTGTTGTTTGGGCGCTTAACGCTATTAGGCGATGGAGAACCTTCGATGAAACTTGACATTTGTACG AGTCGGAGAGGAGAACTTAGAGAATAATGGAAGACTCAAAGAGTAGAGTCGGGTGTAAGGCTAGAGCCTTGGGCTAGAGA GCTTACCGTTTTTGGTTTAAGCTTGCATAATGATTTTACAGATTTATATTGACGTTTCGGGTAGGTTCCGAGGTATTACT TTCCTGCGGTTCCCGATGTGGAAATCGTAGTTAGTATGTCAAACATATGGATTCATTGCATAATCGGTTCCTAGTTGAAT CTGCTACTACTTGTCAGGATTCGTAGGATGTGTTCTTTCGTTCTTACCTTCGGGTACTTGCCTTGTTCAAGGCTTGATGT AATTTGAGTTACAGTTGGGTTTAGGCATGACATGTTTTGGAAATACTTTGAAGAAAAAAAAATATATACCCATATTTATG AATACTTTTGAAAAACATTGCATATCTATTTTAGCAGGTTACTATGGTGACCCCGTGAAAATCGGGGCGTTACAAGTCAC AACTACCACCATCCACCGCTGCCACCAACACCGCCATCTCTACCACATCCACCACCCAACACGTAAAAGCCTATGTGAAC TAGTGTTTGAGTAAAAAATAAATGTCTGATAAGTGTTACTGTAGATTCAAGTGTATATGTGAGATAAAACATATTCAGTA ATGATTCATGAACCACTATACAGTAGAAACACCCCTTTTTCCTGCGGATTTTGCTACGGGATTTCCTGCGGATTTTGCAT CGGAAAAATTTGAAGGTAAAATTTGTAAGAAAATCCGCAGGAAAGTACTATTTTCGAACGAATTTTCGCAGGTAATGATT TTGCGGCGGTTAAATAACCGCAGTGTAAAATTGAAATTCCTAAATTAGGGATTTGACCAAATAATACACTGAACTAACCA CCTAAATACACATGACTAATCATAAAGCACATAACCGTGTAAAGTTGAAATTCCTAAATTAGGGATTTGGCCAAATAATA CACTGAACTAACCACCTAAATACACATGACTAACCATAAAGCACAGAACCGTGTAAAGTTGAAATTCTTAAATTAGGGAT TTGACCAAATAATACACTGAACTAACCACCTAAATACACATGACTAACCATAAAGCACAGAACCATGTAAAATTGAAATT CCTAAATTAGGGATCCGAAGCAAAATCCGCAGGAAAATTGGTGTTTAGGGGTGTTTCTACTGTATAGTGGTTCATGAATC ATTTTTCAAACGTATTTAACCTTTTTTTGTGCTTATATATATTGTCAAACGGGAAACAATTCTTCCGATCTCCCCGAATC AAAAACATTCACATAATGTAAACTTAATTCTCAAAATGAAATTTTTTTCATTTACAAAGACTCTATTTTATTTTATTTTT TAATTTCGCGGAACTAATGCTATTAAAAAAAAAAACAAAAAATCACATTAAGAAATGGGGAATGTGTAGTTAAATTGAAT AGCACATTCCTCAAAGTAACCTTTGGACGGTTATAATGAAACAGTTGGCCATAAAAGAAAAAACAGAAAACACATTGGAC GAAAGAGCTTCCACCGCTCCGATTCGCCGCCTAAAATTAGCTACGAATTCTTCTGCATTGACCATGTTCCAATCAATTAT CCTATAGACCTCAAATTTTAGATCTCAGAACATAGCACATGTCGGTAAGTTCTTTTTCTTCGAATTTTTTCGTACAATTT GTTATGCTAAAATCAACTGGCTCTGTTATTCAGTTTCAATTTTGTTTCCATGTTCAATACCGATCATTCAGAGTGGAACT CCACTGGAATTTTTGGAAATTTATGTGTTGGGTGTCTTGGATTCTTTTTAAATTTATCAGATTTTCTGTTTAATGTGCGA ATGTGTTACTGTTGACAAATTCCTCCTTCCCTGGTGATTTTAACAATTTATGATGATATCTGAAATCCTGAACTATTCCC TTTACTGTTACAAAAATTGTAGAACAGAGAGAAAACGCCTCCGGAGTCCAGACTACCGGGCAGGGTGCCGGGGATACCAA CTGATGCCCACTCATAGATAGGAGTGTCAGGGGATCTCCCTAATGAAAGTTGTCTACCAACTTATATTTTACTTACACAG AGGATATAGAAAGAAAATGAATTTAGAAAAAAAATATTGAAAGTTTTTTAAAGTATGTGATATGGAAGAATATGTAAATG ATGTGTTCTTTTTTTCCTTTCTGAACTTGTTTTTAGGTTTTATCAAGCATGGAGCTGCCTACAACTAATGTGGATCTTAG TCCTGAGAAGATTAAAGATGAGAAAGAGGGAGGTCCCATGATCCATTGTGATCTCTGTGACACAGAAGTAATTCACAAGA TGGCTCAAATGTTCGTACCGGGACTAGCCTCTGCCTGCGTTGATAACACAACGGGAGATCCCTTCAAGACTCCTGGTTCA GTGGTTAATGATCTGAGGAAGGATATGATTGATTACCTTACCCAGAGAAGTGAATCGTTTGTTGCCGAGTCTGTTATCTT AGAAGGTACTGGTCCGGATGATGAAGTGTCGGATCATCCTTTTGACATTGTTTCTTATTTCGTCGATGACTTTGTAGATT CAAAGAGGAATTTGTTTAGTAAGGTTTCAGGGTGGCTCCTAAGCGACAAGAGAGAAGACAAGATAGATGATTTTGTGCAG GAGATAGAAATGAATGGTTTTTGGTCGCTAGATAGAAGAGAAACGATAGCAGAAACTTTGCTTAAGAATGTTGACTTCAA GAACTTATTTCATTGCAGCATGAAATTTAATTCAGCTGAAGATCTTGCCAAACATACTGAGAAGTGCAACTTCAAACCTA TGATCTGCCAGAATGAGGGATGTAATAACAGATTTAGCACACGTCATTTGAAGGAGCATGATTCAACTTGTCCTTTCAAG ATAATTCCCTGTGAACAGAAATGTACCGATAGCTTAATGAGGCGTCAGATGGACAGGCACTGCATAACTGAATGTCCAAT GAAGCTTGTGAATTGTCCTTTCTATTCAGTGGGGTGTCGATCTGCTATCTCACAATGTATGATTGAAAAACATTGTGCAG ATGACCTTCATTCTCACTTATTGCACATCCTTAAAGGCATACATAGGGAAGCATCTGGTGAAGATCTTAAAAGACGAGTA GAGCAAATTGTACAGGTTAGTCAGTCAGATTTTTTACTATTTAAAATGTTAAGCATAAAATTTGTTGTGTATGAAATCAT TGTAAACACTTGAAAATATTTTCGATTTTAAGTATTAACGGACTGTTAAAGGAATACTGTGTCATTTATATACGTGAATG AGGGTTGATTAATAGAGTTATTGTTTAAAGTATGGCCATCAAACTTCTGTCCACTTACATTCTTTGTTAATTATTCACAA ACATCATTAAAAAAATTTCAAGGCTCACTTTTCATTTTAATTTTAGTGGGTTTTCAAATGCCATCATAATACCTTTCAGT TCCAAGAGAGGCCTAAGACCTAATGGTGGAGCTTAGGTTAAAGTTCAGGCAAAGGGTCTTGAATATTCGCTTCTTGAAAC AAATTGTCCCCATAGACTTGGTGCCACTTGAGCTAAGTCTCTTAGGTATTATTTATGAGAATGGATAGTTAAATATATGC TTTATTTCTTAACATTGGCTGCGGCTGTTTTAACAGCCAAATTAGCTACTACCACAACTTCAGTAATGTTAAAGATTGTA TTTGATAGATGAATTTATCTTTTATGCTTGTCAATGTAAAATAATTGTACACTTTTGTCTAATGATGTGTTATTACATCA TTTAATGAGTTTGTTATCTCATATAATTGTTAATATAGTTAAACTCATTAAATGAGGTGCTACGGTAAGATTACATGCTA TTGTGGAAAAAGTTACTCAAACAGTGCATCAAAAACAAACACTTAAAAAATTGTGGTCTCAATAAATTCCACTTCAATTT TGGTTTTCAATATCACTTGAACATGCCTAAAGGGAAAATGTTTCTAACTTTTAACCGTTTGAACGAAACAAGTCTCTTGT ATATTATTACTATCTTTATCATGTCGTTTGCATTAGAATTTAAGCAACAACATGCTGCTCTGAAGCATTTGCTTTCTATA TTCTGTTAAAATTAATGCAGAATGCAGTTTCTTGAGATTGAGAAATATGAACCCATTACAATAGAATTTTGCATTAACTT GCTAATCACATCGAACACAACATCATTGTTATTGGTGTCAACATGTTTGCTCTGTCAGTTTTATGACTTTTGTTGGGTCA TGAACATATGGTTTTCTTGTCATTGCCCTGTTCATTTTCCTTGATAAAGACAATACACAGATTCACAGAAAGTTATATTG GTGGTTTTTAGTTTGTAGCTATCTAATTCCTCTGTTCATATTCTTACCCAAATTCTAGTGGCTCTTTTGACCTCCTTTGT TATCTTGTTTCTTATTTTGATTTCTGCTGATCTTAAACATGATTGAAATTTAGACCTACTTAATTTTTAAAGATTAAAAT GATCAATGATGCACACCAATTTTCTGCTTGGTTGACTGGTATACATTCTGAAGTACATTGGATAGAAGGTTTAGACAAAA AAAATGGATAGAATGTGTGTAATAGTAATAATTTGATAGTTTTCTTAATATTAATTTTTAAACATTAATAAGGATGTGGT ATAAACATTTTGGTTGTGGCTATTCAGATGTTTTGTATCCTTCGCTATTTATGTGAATGATATTGTGTTCTAGTTATTTC AGAACTTCCTCATTAGATTTCTGCTTTGGAGCAGTTGGTTTACACTTGACCTCTCATTCAGCAATTTTCTCAATTTCTGC TGACTGGCTTTTTGTATATAATTATGGCCAGAAAATATTTTTCACAAATAAACGGCATCAGCAAGAGTTTGAGGGAATGA ATTTGATTTTATCTTAAAGTGGATAGGCTTAGTTCGTAGCATTAAATCGTCTGTTTGTGGAGCATTCCTGCATATTCTGA CCGGCAATAGATACTAGGGCTTTGCAATATTTGATTGATTACAATTCTATATACTCTCCATATACTATTGAAGTTCCATG GAGATGCGTAAGAGAAATGTTTCCAATAAGAATAGTTTATTTCTGCTGTTTTTTCCGAATTAACCTGTGGATACATATAA TTCAAAGGAATATGTAATTGATTCATATAAGGTAATTTTTTCCTTTCATCTAGAGTTCCACTAACTTATATGTTTCCACA AATAACTGCAATTCAATTTCTTGATCTGTATCTTTAATTTTTAGAAACTTAAAAAGACTTCTACCATGAGTTTCCATTTA TCTTCTCATATTACTTGGGACAGGCATACCTAATTTTTCTTGGTATAATCAATACTGAAAAGTTATGTTTCTTATGATAG GCATCATCAAGCAGCAGTTTAGCAGAGGCTAAGGAAGTGAGATCTTTAAAAAATATCGTCAAAGCTCTGGAAGCTAAGCT AGGACCTTTGGAAGTGAGTGCGGAGAAAACTAGTGCAGAAACAGCTTCCATGAATGAAGATAGTGAAGATAGAAGCACCG GAACAAAGGGCGGTGAGCAGAGCTTACAAGCTTTAAATTCACCAGACAAAGTTGAAGTGAGTGCTATCTTGAATAAGAAT AGTGCAGAAAATGCTGTGAATAATGAAGACAGTAAAACATGAGGAAAATGGAAAGGGTAATGTGAGGAACAATGATTTTG AAATTGTTAGCATACAAACTTAAAAAGTAGAATTTTTTTTTGTTTGATATGTTATGTTGCCTATTCTTTACATGAGAGGA GGGGTTTTTCCATTATGCAAGTAACTGGTCACATATGCTGACTTTTTCTTACTGAGCGTTAATATTATTCAATTAATATC TCTTATGGTTCTCTTCTCCCTTTGACTGTGAAGTTCTGAAGTTTTTGGAGATGAGCTTGCAGTGTGAAATTAGACATTTC TTGAAATAAATATATGAGGAT
CDS sequence (LotjaGi5g1v0113100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGCCTACAACTAATGTGGATCTTAGTCCTGAGAAGATTAAAGATGAGAAAGAGGGAGGTCCCATGATCCATTG TGATCTCTGTGACACAGAAGTAATTCACAAGATGGCTCAAATGTTCGTACCGGGACTAGCCTCTGCCTGCGTTGATAACA CAACGGGAGATCCCTTCAAGACTCCTGGTTCAGTGGTTAATGATCTGAGGAAGGATATGATTGATTACCTTACCCAGAGA AGTGAATCGTTTGTTGCCGAGTCTGTTATCTTAGAAGGTACTGGTCCGGATGATGAAGTGTCGGATCATCCTTTTGACAT TGTTTCTTATTTCGTCGATGACTTTGTAGATTCAAAGAGGAATTTGTTTAGTAAGGTTTCAGGGTGGCTCCTAAGCGACA AGAGAGAAGACAAGATAGATGATTTTGTGCAGGAGATAGAAATGAATGGTTTTTGGTCGCTAGATAGAAGAGAAACGATA GCAGAAACTTTGCTTAAGAATGTTGACTTCAAGAACTTATTTCATTGCAGCATGAAATTTAATTCAGCTGAAGATCTTGC CAAACATACTGAGAAGTGCAACTTCAAACCTATGATCTGCCAGAATGAGGGATGTAATAACAGATTTAGCACACGTCATT TGAAGGAGCATGATTCAACTTGTCCTTTCAAGATAATTCCCTGTGAACAGAAATGTACCGATAGCTTAATGAGGCGTCAG ATGGACAGGCACTGCATAACTGAATGTCCAATGAAGCTTGTGAATTGTCCTTTCTATTCAGTGGGGTGTCGATCTGCTAT CTCACAATGTATGATTGAAAAACATTGTGCAGATGACCTTCATTCTCACTTATTGCACATCCTTAAAGGCATACATAGGG AAGCATCTGGTGAAGATCTTAAAAGACGAGTAGAGCAAATTGTACAGGCATCATCAAGCAGCAGTTTAGCAGAGGCTAAG GAAGTGAGATCTTTAAAAAATATCGTCAAAGCTCTGGAAGCTAAGCTAGGACCTTTGGAAGTGAGTGCGGAGAAAACTAG TGCAGAAACAGCTTCCATGAATGAAGATAGTGAAGATAGAAGCACCGGAACAAAGGGCGGTGAGCAGAGCTTACAAGCTT TAAATTCACCAGACAAAGTTGAAGTGAGTGCTATCTTGAATAAGAATAGTGCAGAAAATGCTGTGAATAATGAAGACAGT AAAACATGA
Protein sequence (LotjaGi5g1v0113100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELPTTNVDLSPEKIKDEKEGGPMIHCDLCDTEVIHKMAQMFVPGLASACVDNTTGDPFKTPGSVVNDLRKDMIDYLTQR SESFVAESVILEGTGPDDEVSDHPFDIVSYFVDDFVDSKRNLFSKVSGWLLSDKREDKIDDFVQEIEMNGFWSLDRRETI AETLLKNVDFKNLFHCSMKFNSAEDLAKHTEKCNFKPMICQNEGCNNRFSTRHLKEHDSTCPFKIIPCEQKCTDSLMRRQ MDRHCITECPMKLVNCPFYSVGCRSAISQCMIEKHCADDLHSHLLHILKGIHREASGEDLKRRVEQIVQASSSSSLAEAK EVRSLKNIVKALEAKLGPLEVSAEKTSAETASMNEDSEDRSTGTKGGEQSLQALNSPDKVEVSAILNKNSAENAVNNEDS KT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 355 | 345 | 3.0E-152 | – | |
| PANTHER | 11 | 355 | 345 | 3.0E-152 | ||
| SUPERFAMILY | 176 | 228 | 53 | 8.5E-7 | ||
| Gene3D | 216 | 281 | 66 | 1.3E-9 | ||
| ProSiteProfiles | 217 | 264 | 48 | 12.785 | ||
| Pfam | 217 | 275 | 59 | 3.1E-10 | ||
| MobiDBLite | 343 | 402 | 60 | - | – | |
| MobiDBLite | 364 | 402 | 39 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0113100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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