Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0115100 |
| Transcript ID | LotjaGi5g1v0115100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein; TAIR: AT3G07040.1 NB-ARC domain-containing disease resistance protein; Swiss-Prot: sp|Q39214|RPM1_ARATH Disease resistance protein RPM1; TrEMBL-Plants: tr|I1N0L5|I1N0L5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0115100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:23464342..23465541) extracted from Lotus japonicus Gifu genome v1.2.
CAAACATCCGCTCATTGCTTTTTTTCATTGAGGGAAATGCTCTTGCTGAACTCTTGAGCACAATCCCTGAGAAATTCAAG CGATTGAAGGTACTTGATTTTGAAGATGTAAGATGTCAATATGATGCTCCTGAGGATTTGATGACTCTAATCCATTTGAG GTATTTGAGCTTCAAAAATACAGGATTGAAGAATCTTCCAGAATCCATTGACAATCTTATATTCCTGGAGACCTTGGATC TAAGGTTCACAAAAGTGAAAGTGCTGCCAAAGGGAATCGGAAAGCTTACAAAGCTTCTGCATCTTCTGGTTGAAACGGGC GAGTTTGCTGCAGACGAGGATATTGGAGGCCTGACATCACTACAAACTCTAAGGGGTGTGACCTTACGTGTTGATGGAGC ACTAGAGCAACTTAAACAGCTAGAAAAGCTGGTGAAATTAAGAGTTTTGAGACTGTCGAAGGTTATGAACCAACATAAAG AAGCTTTATATTCCTTATTAAATGCATTGAAACAACACTTGGAGGAGCTGCATATTGCAACAATTCCTGGTCATGATGAT GCATTGATATTTGATTCGCATTTTCCAGACATACCTATGCTTGGAACACTTGTTCTTGGTGGGATAACATTTGATTCGTT GAGTTCAGGATGTAAAAATCTTGGTCAGTTGGTCATGAAGAAGGGCTCGCTAGCTGGTGGTGCATTCAAATCAATCGAAG ACTTGAAAAACCTGTCGACTCTCCGTTTATTTGACACGAATGCCGGTAGCACTTTGCATGTTCATGATAAAGGGTTCCCG AATCTAAAGCATCTAGAACTTTCAGAACTTCCTCAGTTAAATATCTTCCGTATTGATGAAGGAGCACTGCCTTCTCTGCA AACTCTCAGCTTAGATTGCATCTTCACAGAGGTACCGAGCTTCCAACACCTAAAGAAACTTAAACGCCTTGAGGTGTTTA ATTCGTTTGAATTTGAGGATGTGAAAATCATCGAGCATGTGCCCCTTGTACAAGTTTATGATCATGAGTCAGAATTAACT CATTATTTCGAGTACGGAAAAAAAGGTGTGTGCTTTTCCTTCTCCATAGTTTTTCTTATTAATTTTTACTGTTTAATCAT AAAAATTGCAATATTTATGCTTTACAATTTCTATTGTAGTGAATTGTATCTCATCAGCAATATGAAATAATGAGGTATTG
CDS sequence (LotjaGi5g1v0115100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCTAATCCATTTGAGGTATTTGAGCTTCAAAAATACAGGATTGAAGAATCTTCCAGAATCCATTGACAATCTTAT ATTCCTGGAGACCTTGGATCTAAGGTTCACAAAAGTGAAAGTGCTGCCAAAGGGAATCGGAAAGCTTACAAAGCTTCTGC ATCTTCTGGTTGAAACGGGCGAGTTTGCTGCAGACGAGGATATTGGAGGCCTGACATCACTACAAACTCTAAGGGGTGTG ACCTTACGTGTTGATGGAGCACTAGAGCAACTTAAACAGCTAGAAAAGCTGGTGAAATTAAGAGTTTTGAGACTGTCGAA GGTTATGAACCAACATAAAGAAGCTTTATATTCCTTATTAAATGCATTGAAACAACACTTGGAGGAGCTGCATATTGCAA CAATTCCTGGTCATGATGATGCATTGATATTTGATTCGCATTTTCCAGACATACCTATGCTTGGAACACTTGTTCTTGGT GGGATAACATTTGATTCGTTGAGTTCAGGATGTAAAAATCTTGGTCAGTTGGTCATGAAGAAGGGCTCGCTAGCTGGTGG TGCATTCAAATCAATCGAAGACTTGAAAAACCTGTCGACTCTCCGTTTATTTGACACGAATGCCGGTAGCACTTTGCATG TTCATGATAAAGGGTTCCCGAATCTAAAGCATCTAGAACTTTCAGAACTTCCTCAGTTAAATATCTTCCGTATTGATGAA GGAGCACTGCCTTCTCTGCAAACTCTCAGCTTAGATTGCATCTTCACAGAGGTACCGAGCTTCCAACACCTAAAGAAACT TAAACGCCTTGAGGTGTTTAATTCGTTTGAATTTGAGGATGTGAAAATCATCGAGCATGTGCCCCTTGTACAAGTTTATG ATCATGAGTCAGAATTAACTCATTATTTCGAGTACGGAAAAAAAGTGAATTGTATCTCATCAGCAATATGA
Protein sequence (LotjaGi5g1v0115100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTLIHLRYLSFKNTGLKNLPESIDNLIFLETLDLRFTKVKVLPKGIGKLTKLLHLLVETGEFAADEDIGGLTSLQTLRGV TLRVDGALEQLKQLEKLVKLRVLRLSKVMNQHKEALYSLLNALKQHLEELHIATIPGHDDALIFDSHFPDIPMLGTLVLG GITFDSLSSGCKNLGQLVMKKGSLAGGAFKSIEDLKNLSTLRLFDTNAGSTLHVHDKGFPNLKHLELSELPQLNIFRIDE GALPSLQTLSLDCIFTEVPSFQHLKKLKRLEVFNSFEFEDVKIIEHVPLVQVYDHESELTHYFEYGKKVNCISSAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 289 | 289 | 4.8E-29 | ||
| PANTHER | 3 | 271 | 269 | 4.6E-21 | – | |
| PANTHER | 3 | 271 | 269 | 4.6E-21 | – | |
| SUPERFAMILY | 3 | 275 | 273 | 1.58E-26 | – | |
| Coils | 77 | 97 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0115100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…