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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0145600 |
| Transcript ID | LotjaGi5g1v0145600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | basic helix-loop-helix (bHLH) DNA-binding superfamily protein; TAIR: AT3G57800.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q3EAI1|BH060_ARATH Transcription factor bHLH60; TrEMBL-Plants: tr|A0A0S3SU92|A0A0S3SU92_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0145600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:36970072..36976845) extracted from Lotus japonicus Gifu genome v1.2.
GGAGCAACATCTTTTTTTTAATCTCACTCTATTCATAAAGTCAGCTTACCCTTAAACCGTCAAAATGTGAATTGAATTGA CACTTTCAATCAAAATATCAAAAGTGGACTAAGGCGAATCCAGCCTGACCGGCCCATCAGCCCATATTACCACCCCAACA TGGAAATCCATACACACCATTATTCATTTTTTTTTTATAAGCACACCATTATTCATAACTTCGGTAGCAATCAATTTTCA ACGGAAAAAAAAACTCAAATCATCCATGAAAAGAAATCAACAAGCGCATATCTTCCCCTGCATCGAACCAAACCGTCGGA TTCCCACGCATTCAACTCTACCGTTACAACCCGTACGAAAATACCCGTATATATAATTGAGATGCCAAGCCTAGTTAGAG AGACACCATAACATATCAACGTTGTTTTCCCTGTACTTGAAATGGCTCAGAACCAATCTCACAGACAATCACAGAAACAC ACACAAAACAGAGAAAGAGAAAAGACTCAGCTAGAAGAAGCACATTAAAAAGAAACAGAAACACCACCCTTTTTATATCA CTCCAAACACATTCTATCTTTCCTCATCACTTTCTTTTCTCTTCCTCCCTTTCAAGCTTTTCAACAATCCGAAACTCTTC AAATTCGAACCCGGTTCGGTTCGGTTCAATCATGGAGCAAACCACACTCGACTCGTTTCAGTTCAACGAAGAAATCCAGG GACTCATGGCTCCGGCGCCGGAATCCGCCAGCTCCTTCACCGCGCTTCTCGAGCTGCCGCCCACGCAGGCCGTCGATCTC CTCCACTCGCCGCCTCGCCACGTCAGCAATCCGGAACACCATACGTTGAGCGAGAATTTGACCTTTCTTTCCAACAACGC CGCCAGATTCTCCGTGTTCGCCGCAGGAAACTCGCCGCCGCCGCTGCAAGTGAAGCGTGAGTCGCCGGAGACCGATTCAA ACCCGAGCTCGGCGCAAGGCGGTGGCTACGTCTCTGATCCTGCCGTCGAGAACATGAACCCGAAGTGCGTCAAGAGGAAG GAGCGAGAGAAGAAGGTTCGTCACTTCGTCCCTCAAATTCTCTGATTGCAACCGTTTTCCACAATTTCTAGGGTTCTGAT TTTCCCCAATTTGGGCGAAATTTCATTGGTTGCGTCGTGAACGCAGGTTAAAGTGTCGTCGAAGAAGAGCAAAAGCGCCA TCGCAGCCGACGATAGATGCGGCGGCGATGGCGACGGCGACGGCGAGAAGCTTCCGTACGTGCACGTTCGCGTTCGTCGA GGTCAAGCTACTGATAGTCATAGCTTAGCAGAAAGGGTAACCACTTTAATTAACCGCTAATTAATTAACTTCTTTAATTA GTTTTCTTTATCAAAAAGTTTAGTTGAGTATATTTAAGAAAACAACAAATTCTTAATTTTTTATAGTTTAATTTGTTTTG TTTTGTAGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAACTTTTACAAGAGCTAGTCCCTGGTTGCAACAAGGTCTTA GTTTCTGAAACTTTTTTTTATTAGATTTGATGAATTTTGCATAACTCAATCTTCATGATTATGCCATGATTATCTATTAA ATTGTCTCCTAAAGCACTATTATGTCTCCGGATTATGGAGTTTAGTTAAATGGATTATGTCATTGTCAACTTTTCACAAA AAAAAAAGTGCATGCTTTTGCATCAAGCAAAGTGCTCGCTGCTACTGAACATGACATTAAGATTAGTTACAAGGAAAAAC TATTCATGTCACCCACACTAATCCTCATGTAGTCATATCATATGTATCGCAGTTTAAAGTGCGATATAGAAAAATGCATG TTGGAATCAAAAAAAAAAAAAAAAGAAAAATGCATGTCGCACTTAAGTATATGCAGTTTTTTCAAATGTAATATGCACTA TGTTTTTACACAAGCACTTTAAAGTGCAGTATACATTTATTTAATCGGGATATTATTAAGACTTAAATAAGTTTTTGGTC CCTATTATTAATAAGTGTGGGTGTTATTAATAATTTTATCCTTGTTACAATTTGCAACGTAATGAAGAGGATTAACCCAA CTCTTCTTTTTGATACATCGGAAAATAACTCTGAACTCTTCTTATAACCCCTTAATTTTTACATCATAGTGCACAAAAAT TATCTCACCTCTTCATTTTTTAATATTAAAAGTGCTGATACACCGAGAATTATCCCAATTCTATTTGAAGATTTTGTTTG TTTTGTAACTCCAATACAAAAGAAAGATAAAAACTCATTATTCCAATCTTATCTTCTATTTAGCCTTGCATAAGTTGGGT ATGTAATAGCAACTCTTCTATTCAACCCTTCTATTCTAACTGTATTTTTGGATTCCATTTACTTGTAAAAGCTCTTTTAA TAGAAATTCATATTTTAAAAGAGATTGAAAAAAATACATTTTGGTAAATAATATCAGTGTGTTTGGATTTCCATCCGCTC ACATTCTAATGCACTTTGAACTGGTTTGATCAATTCATCTCTCTTGTGTTTTTGGAGTGAATGTACTTTTGTTAAACTTG AATATAAATACAAATGCACACTATCTCATAAAGAGTTACTTGAATTGAACGGCTGCGGTAACACTGCAAAAGGAAACATC AAAACATGAATGTTACACAATAGTAATATATTGATTCTTTTTTATTTTGGCCATAAATTAATCGTTGTTTTTTGAAAAGA ACAAAATACAAATATACGTCATGGTTTGTACAGAACAATTAAGGTAATCCTCCCTGGTTCCTTTCTTCAGCCTTGTGGCT TAATGGAGAGACAGAAGGGTGGGCGTGTGGGGCAAAATAGGGAGTTAGTCTAGCTGGATTGTGGCTTTAACCATTGGGAG ACACATAGGTGGGCATATTGACACTGGAATCCATGGGTCCCCCTAAGCAAGTGAAGTATTAACCTTTCTCAGTGATGTAG ATGGAACCATCAGCTCTGAGTTTGGTATCCATCAATCTTTTATGGGATAAGGATAATAGGGTTAGAAAAGAGAGTATACC TTTTGGTGTTAAAACCTAACTGGCTTTGGTTTGAAGATTGTCGTGTGTGTTTGAACTTTGAATACCAGTTGAGTTAATGG GAAAGCAAACTCATTTTGTCTCGAAGTGAGCGTCAACGCTTGTTAGCACCGGCACTAATGGGTATCCAAACATCCCGTAC ATATCAAAATTATTGTCACCTCAACCTAACCTAATACACACGGCAAAATTTATGTCCTGAATTTATAACTTTATACGTAC ATGATCAAAATTATTGTCACCTAAACCTAACCTAATATACAAGGCAAAATTTATGATCTGAATTTAGAACTTTATACTCC ACTGCATTTTTCTCTACCCTGCTCTTTCTTTTGTCTCTGGGTTATTGTAATAATGATATTTCCAGAGTAAGGACTTGAGT CATCAATGCAACATGTATCTGTTGAGCTACCGGATATTTATCAGTTAGCAACTCTGATTTGTGGGCTCTTCACATGGAAT TTCACCTGTTAAATAATATGTTAACTGCTTTCCCCAAGATTTGCAATCCTAAGATCAAGGATTTTCCACTAGTGTGCTTC ACTAATTGATTTGAAGTTAAACTTGAGCTCTAACATTATTTGTTGATATTCAAAACTAGAATTTAGGAGATGGTTTTAGA CTTTTAGTTGTCAACTCCAGGATGAAAATAATGAAGATTGGTTGGTTGTGCTGCAGCTAGCGTGTGAGAAGTTTTAGCAA GCCCCATTTCTGATTATGGTTTAAGTTATTTTGAACAAGGGTCTTGTTATGGAATCAAGAAGAATACCAAATTTTTATTG AAAAGTACAATGTTCAGTGTATTAAATGTTACATTTTCTATTATTATTCTTATTTCTTTTGATTCCTTTACTAGAGCACT GCCCTTGCCTTACTCAGACAGTGTTTATCATGTATCAACAAGGAAAAAATAATCTGGTTGGGATGTCAGTCCAAATTTAG TTATCTCATTCCGAATTTTAGATTTACTATGCACTATGTTCGATCACCTTTCATAGGCTTTTCTATGTTCAATTTTGAGC CTTAATACGCAGCCACTCTTTGATTTTTGACAGCATATAGATTGTTTTGAATTTTTCTTTAAGTTGCTAATCTAGTAAGT CAAAGATAGGTGACATGACAAAGTTCGTTTTACAGATATCAGGAACAGCATTGGTTCTAGATAATATCATCAACCATGTG CAATCTCTGCAGCATGAAGTGGAGGTCAGATTTTCAGTTCACTTCTAGTTCTAGGCAATTGGTTTTACAAACAACTAGAA GGATAAAGTAGTTAGCACCAATCTATTCCTTAATATAGCTGTTGTTGGTATTGCTTACAAACTTTTAAAGAAGTGGCTTG TGTTTTCTTTCTACAAGACCTATATCAGATTCTGTAAAATTGAAATATTGTCCTGTATATATACCATAAGATTAGGGAAC ATTTTGGCACTCTTTGGATCAAATAAAACACAGCTTACTCTATTAGCATTAAAGCAGTAATGACCTTATTATTTTGTACT AGTTGACATTATAAACTGCTATCCTTTCTTCTTCAATGAACAGTAACGGGTCTGACTCCTATCTTTCCATGCCTAATGTG GACTTGATGCTTAAAATTTCATACTCCATAGATTGTGCATTATTTGGATAAGTGCATATGCCTGAAATATATAAAACACA AAATGTATATGCCCTCTGAAAATAGCGCAAAGAATTGGGTAAACTTCGTAGGATCATTTTGTTGGAACAGAATGCCGTAA CATTTATTAGTTTATCTTCACAGATATGATAATTGTGCTCATTGATGTATGCTCTGGTTTCAGATTTTATCAATGAAACT GGCATCAGCTAACCCAATAATTGATTTCAACCTTGACAGCATATTGGCTACCGAAGTAAGTACTTATTTTTCTCTTGTTG AAAAATACTATGTTAGTATCTATTTGTCTCTGGCAGCTGGGGGAGTATTATGAACTACATAGGCTTCTCTGGGATCGCTC TAAGAACCATATTTGAGGAATAACATATGTCGTCATCACCTTCTGGAGCATTTTCAATTCTAGTATTAGTGGGGCCTTGA AACTTGTATTGTTAAGTCATCCTGATTTGGTTTTGGCCTGCTTTCTCAAACTGTTTTTAAGTTTCAACATTAATTAGCAA GTGATTGATAAAAGTAAAAATAAGAAAACTGTTTTGTGTTTGCCTATTGTATGTATATAAATGCCTAAAATCTGAAATGA TGAACTTGAAAATGGGGACTTTGAGAGATGGCTTGGAGTCAGTTACTGTCATTTATTCTATTCTGTTGGATACTCATGAG TGACATACAGACCTAGAAATAGAACTGTAATCACTGAAAAAAGTATTAACAATATGAGTTAGAGCATAACTGCATGTACT ATAGGTTGCTTAGGTCCATCCTAAATCCTAATAAGTAATCAAGGTTGGGACTGGTATATGCGATTAAAAATGAATGTTTT TACATGTTCAGTTGGAATAGGATGTGTGTGATTTTGTGGATAAAGAAATCGAGCCAGTACAGTTTTTTTCTGTTGATGTT CAGATTTTATTTAATTTCATTGGACTTATTAAATTTTGTTTTCTTGTAGGGCGTGTCCCTAACAGATAGTAACTTCCCCG CCACAGTTGCGCCCATCGCATGGCCCGAAATCCCTCTGAACGAAAACAGACAACATTATCAGCAATCATGGCAATTCGAT GCATTCCACCAACCGCTTTGGGGTAGGGAAGAATACAACCCTAATTTTATGACTCCTGAAAACTCGCTTTTGAGTTATGA CTCATCAGTAAATTCAGGTACATAAGAGTAAACCAACCTGCATGTCTCCAAAGCGACTGTCTAATTTAAATTCATCATGG TCTCTACTTCCATTGGCATTGAAGTTCATAACTAGACAGGGCTTAACTTAATTGTATAATGTTTATAAATTGCTCAGAAA GAATTAATTTACCTACACAAAATAAATACAGAGCTGTTAATGAATTCTTAGGAAGCTTTGCAATTTTGAATCTGAATTTA ACAACTTAAATTGTGATACAGTATCTCTGCACTCAAATCAGTTAAAGATGGAGCTCTGAAGGAGTGCAGAAGCGGCGGTG CTAGTAGAAATTAGCCCAGTAGAGTATATATCAAATATAGTCTTTGGAATCAGCCGTGATTTGATCAGCCACAAAAATCA GCAAGGTTTCTTTGTTTTCTTGTCTCAGAATCAGTTGGAAACCCGGATTCTATTCAGCCTGCAAGGAAAAGTCGGCATGC TATGTCTAAATAAAATATATTACTATCACTATGTACACTAATTATAGGGGCCATTCAATCGAAGGCGATTGACTGACTCA GATTGTAAAATCATTGAACGGACTGTTAGTGAATTACCAAGGAAGTTTGTTGCTTTGTTCACTAGATTGTAATTGGATGG CTGGTTCTTACTGAATATATTCCTGAGCAAGCTACTCTGAATTTTAATGATGGCCAGTATTTTCATTATTCTGTATCTGT AACAAAGCCATTAATCTTGTTATTTGTTGATTTCGGCCAAGGTATATATATAGCACAACACCACAACAGGGTGATATTGT TGTCTTCTAAGTTCTAACTAAATTGCCTTGATTCTGCACTGAGTTTTTTTTATTTTACAATAAAAATTTATTCACACACT ACATGCACCTACAGAGATCTATATACTTTATAAAACAAAATCGTTATCCACTAT
CDS sequence (LotjaGi5g1v0145600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAAACCACACTCGACTCGTTTCAGTTCAACGAAGAAATCCAGGGACTCATGGCTCCGGCGCCGGAATCCGCCAG CTCCTTCACCGCGCTTCTCGAGCTGCCGCCCACGCAGGCCGTCGATCTCCTCCACTCGCCGCCTCGCCACGTCAGCAATC CGGAACACCATACGTTGAGCGAGAATTTGACCTTTCTTTCCAACAACGCCGCCAGATTCTCCGTGTTCGCCGCAGGAAAC TCGCCGCCGCCGCTGCAAGTGAAGCGTGAGTCGCCGGAGACCGATTCAAACCCGAGCTCGGCGCAAGGCGGTGGCTACGT CTCTGATCCTGCCGTCGAGAACATGAACCCGAAGTGCGTCAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGTGTCGTCGA AGAAGAGCAAAAGCGCCATCGCAGCCGACGATAGATGCGGCGGCGATGGCGACGGCGACGGCGAGAAGCTTCCGTACGTG CACGTTCGCGTTCGTCGAGGTCAAGCTACTGATAGTCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCG GATGAAACTTTTACAAGAGCTAGTCCCTGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTAGATAATATCATCAACC ATGTGCAATCTCTGCAGCATGAAGTGGAGATTTTATCAATGAAACTGGCATCAGCTAACCCAATAATTGATTTCAACCTT GACAGCATATTGGCTACCGAAGGCGTGTCCCTAACAGATAGTAACTTCCCCGCCACAGTTGCGCCCATCGCATGGCCCGA AATCCCTCTGAACGAAAACAGACAACATTATCAGCAATCATGGCAATTCGATGCATTCCACCAACCGCTTTGGGGTAGGG AAGAATACAACCCTAATTTTATGACTCCTGAAAACTCGCTTTTGAGTTATGACTCATCAGTAAATTCAGTATCTCTGCAC TCAAATCAGTTAAAGATGGAGCTCTGA
Protein sequence (LotjaGi5g1v0145600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQTTLDSFQFNEEIQGLMAPAPESASSFTALLELPPTQAVDLLHSPPRHVSNPEHHTLSENLTFLSNNAARFSVFAAGN SPPPLQVKRESPETDSNPSSAQGGGYVSDPAVENMNPKCVKRKEREKKVKVSSKKSKSAIAADDRCGGDGDGDGEKLPYV HVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDNIINHVQSLQHEVEILSMKLASANPIIDFNL DSILATEGVSLTDSNFPATVAPIAWPEIPLNENRQHYQQSWQFDAFHQPLWGREEYNPNFMTPENSLLSYDSSVNSVSLH SNQLKMEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 328 | 328 | 5.6E-164 | – | |
| PANTHER | 1 | 328 | 328 | 5.6E-164 | ||
| MobiDBLite | 77 | 155 | 79 | - | – | |
| MobiDBLite | 90 | 104 | 15 | - | – | |
| MobiDBLite | 131 | 155 | 25 | - | – | |
| Gene3D | 165 | 235 | 71 | 1.3E-11 | ||
| SUPERFAMILY | 166 | 236 | 71 | 2.88E-14 | ||
| CDD | 166 | 223 | 58 | 9.32013E-9 | ||
| ProSiteProfiles | 168 | 218 | 51 | 14.145 | ||
| Pfam | 172 | 219 | 48 | 1.6E-5 | ||
| SMART | 174 | 224 | 51 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0145600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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