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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0145700 |
| Transcript ID | LotjaGi5g1v0145700.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transducin/WD40 repeat-like superfamily protein, putative; TAIR: AT3G49400.3 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|A9V790|LIS1_MONBE Lissencephaly-1 homolog; TrEMBL-Plants: tr|G7KFW3|G7KFW3_MEDTR Transducin/WD40 repeat protein; Found in the gene: LotjaGi5g1v0145700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:37006690..37013070) extracted from Lotus japonicus Gifu genome v1.2.
ATTGAACCTAACCTAAGCCTATTGTACTTAGTGATCAAAGGTTTGATCCTCATTTTCCTCACACTCTTCATTGGTTTAAC TTTGTATGATATTACTTTTTGCAACTACTATATGAGTGAGCTGAAACATATGTGCCTTGCAGTGTGAAGGTTTGGATGGG TGACAATGACAAACTGCTGGAGTCATCAGGAGTGCATGAAGCTTCATTCTTTTTATTGAAGGAGGTCATTCCTACTTTCT TTCCTGCATCTCTTTTCATTTGTTTCTCTTCTTTGTGAATAATTCCTTTATGCAACTTTCAATTTCTAATTAGGTTATAA CTGTCAATGCTGTCCCAGTTTCTGTACTTTCAGTAACTGTGCATGTTCAGTACTCTTCCAAGATGCTTTTAGCCATAGGA AAAGGTTCTGGTTCCTTTGAAATATGGCTATGCGATATATCTACTAGGGAATTTGATAAGCTTGGGTCATATGATGCACA TGATTGCATTGTAAGTTTATTCCCTCCCTTTTTGTGTTAGATGAAGGCTTGAGGCTGCATTCCTCTTTTGGTTTTATATT TTTAATTTCCTTCAGATTACAGGTTTAGCCTGGGCATTTGGTGGAAGATTTTTGTACAGCTGTAGCCAGGTTATTTTCTT TTCCTTTGTTAATTTGGCCGATTTTCTGTCAAGATACCATTAAAATTTCAATTATGTAGCAAAAAATAATTGTGGACATA AATACATTCTATAATCCATACTAAGTTTCTTCATCATTTGTATCTTCTTTTATTTACATACATTCTCTATTTCCACTCCC CAGTTAATTAAACATGATTGTCTTATCATGGATTATGGTTGCGTCCCTGCATGTTTTTGCTGTCATTTTTGCAGCTTAGA GTGTCATATGAGTTGTCATATTTAATGTTATAGACTTATAGTGAACTGTACTTCTCTTTAAAATGATTTACAGAATTACT GTTTCATCCTCTGCAAGCTGAAGATTAAAGGAAATTATATATGCATTTAAAGTTTAAACTTCCAAAAAATGATGAATATC ATTCTTCTAGAACTTGAAAGTCTGAGCTTCCTTCAAGATTTCAACTTAATGATTTTCATTAAGCAGCAGAAATTTGATAT CCAGAATGATAAATTTTCTGTTTATCTTAAGATTTTGAAAACAATATTGGCTTATTAAAATAAACATCACTTGAAAGAAC TGAAATTTTTTCTCAATTGAATTATCTATACTCATCTACATGCAATCTAGAGAGCTACATAGAATATGAAATAAATCTTT CCTATTACTAGTACAATAACAGAATAGTTTTACATGATCAGAAATAAAATAGGAAATAATGATATGCACAACATCAAACA CGTAATAGTGCTTCCGATGTGTACTTAAATAAATGTATTTATGATTGATGAACGGTTGCTCATATGTTGGTAGGATAATT TATTGCATAGCTGGATCTTGCACGAGAGTCGCCTAGATGAAGTATCCATTTTATCTGATTTTCCCCGGAGTAATGATTCA ATCTGCGTATGTTACTACTTTCCTTTGTGGTTTTTACCTTGTTTTTGGTTTGATCTTTGTTGTTCTTACTAAATCAAATA TGCATTTATTTCCTTGCAGCCATCAAGAGATGCATTTAATTCATGTTTTGGTGTAGCTGTATCCCATGGAAATCTTGTCA TTGCAACTGTATGATATTTCATTTCCATTTCAATCTTTGCATTTATGTATCGATCTTGATATGTTCCTGATGTTTACTAA ACCAAAAGTGAAGTGCATATTAAATGCTCAGATATGGTCAATAGCAATGTGCCAAATGCCTAGGAATTATCAGTGTATCC CTGAAAAAGAAAGGGAAAAAACAGAACAAGGTGGTATAAGAGGTCTAACAATTTTTATTAGTCTCAACTTTCAAAACTGC AAGATTTCTTTTTCCTTTTCTCAAAGAGGCATAATGTTGAATGAATTGATTTCATATTTATTAAATGACGAGAAGTGGTG CTGAACAAATATATTTCCTGAAAACTTGCAGCTTTGTTTTCCTCTATGATCTCTTCTATTTGTTTATATTTGCACTATTG ATTATGAGCACTGTGGGCTATTAGCTATATATACTCATGAAATCTTCGCCTTTCTTTTTCTTTGTCCATGAGTATTTTTG TTTGTTTATTGCAGGTTAATTGCTTCGATGTTGAGAAACTAAATCGAATGTATGAAGGAAGGTATAAACATATTTTCCAG CGACTAGAATTTTGCACCCCTTGGAAATAAAATGCAGTAAAAATTGCAACTTGGGTTTGTTAGAAATCCTAAGTTAGAAC CACACAACACCACAAAACCTTAGGCTTAAGGCAATGGGTGTGTGTGTTCTTTATTATATATGCACTTGTGCACTTGCTAA TCTAGGCAATGTGGGACTTCTTTGAGTCACCACTTTATTATCTCTATTACTCTCCCTCAATTGGGACTCCATTTTTTTGT TTTGCATGTGCCTTGCACTCCAGCGGGAACATCAGTGGTCATCGGACTTGTGCTCCTTCGTCTGAGTCTGCCTTTCGACT TTCTTTGTCTGGGCTAGTACTCTAGCGGGAACATCGGAGTTCCTTGGACTTGTGCTCCTTCGTCTGAGTCTGAGCCCTGA GGTCTTGGCTTGCGCAAATGGGACTGCCATTTTTGCTTTTTTTTTTGGGAAGCGGAAGTCATGGCTTGGATCAGACCAGC TCTGATACCATGTCAGAAATCCTAAGTTAGAACCACACAACACCACAAAACCTTAGGCTTAAGGCAATGGGTGTGTGTGT TCTTTATTATATATGCACTTTTGCACTTGCTAATCTAGGCAATGTGGGACTTCTTTGAGTCACCACTTTATTATCTCTAT TAGGGTTTGAAACAGAAATTTACCGAATTACACAGAATACACAAGTACACAAATCTGGTAGATAAATTTCTCTAGCAGCC TAAGAGCCAAGGTTATCCTTTGAGTAAAAAATTCCCAGTCTTACCGGCGTAAAGCAGAATACACAAAGAAACTGTCCCGA ATTCTCCCCTATAACTACACCACATACTGTTAAGAGGTAATAACTGCCATATCACAACTTCCCTATTACAAAATTAAATA ACTACTACATAACTGCCCTGCTTCGTGGTTCGTGTTTTGATGGTGGGTGCTGGATCCCGTTTTGGTCGGTCGTGTTACTG CTTCTTCTCAGGCCCCCGTTAGAGATGGTTCTCTTCGGTTTTTTTTTCTGTCTTTATGTTCCTGTTCCTTTTTTTTTTGT TTTCGTTTCAGGGTTTGTTTCTCAGCCTTTGGGGGCATTTGGTTTGTTGTTGGGATTTTGCCCTCCGCGGCTGGATTTGA TCTTGTCTAGGATCTTTCCGAGTAGTGTAAATGGTAGGGTCATTGGGTAGGTGTTGGCTGGGTGCTTGTGGGGCGTTTAG AGGTTTTTGGGAGGGTTTTGGCTGTGCTGGCCGGGGTTTTTGTCAGCCTTTTGGTTGGCTGAGGTACTGTACGTCATAAC TATCCTACTACTAATTCTGGCCTGCTATTTTGTTATTGCTCCTAGAGTACAGAAGCCACATTTTAGGCTTATTTTCAGCA TGATCCACAACCTGGCCCACATCTTTGCTTTGGCCTCTAACTCTACTCATGTCTCTCTATAACATTATGGCATCGTTTAA TTCATGTAGTTGACCCCATCATGTGGGAAAATACTTGGCTGAGGTACTGTACGTCATAACTATCCTACTACTAATTCTGG CCTGCTATTTTGTTATTGCTCCTAGAGTACAGAAGCCACATTTTAGGCTTATTTTCAGCATGATCCACAACCTGGCCCAC ATCTTTGCTTTGGCCTCTAACTCTACTCATGTCTCTCTATAACATTATGGCATCGTTTAATTCATGTAGTTGACCCCATC ATGTGGGAAAATACTTGGTTATTATTGTTGTTATTTCAGACCCAAGTAGCAAGAGAATGCCCAAGGGTAGATATCTCGTT TATTTACAATGATTATGCTACTATATCTTGAAAATTCAGACAAAAACTACACTCCTTAGCTAATTTCTCACTTTCCTTTT TATCCCTTGCCTTTTCCAAAGCAGAGATTTTATGAAATAAAAATTTGTAAATGTGGATATTTGACATTTTCTTCAACTTT TGACAGGATTCTGAGGGCAGCTATTGAATACTTCTGGATTGGTGGGCTACATGTGGATGTTTGGTTGAAACCTCCCTTTT CTTGCTACATTGAAAAATATTCCAGTTTTCCAGAGAAAGAGTTAACTTATTGGGGGGCCAATATCATATGGTCTTTAAAC CAATATCAATGTCTTGATAAGCCTCTGGTTCTTTGGGATATAATTGCAGCATTATTGGGTTTGAAGGATAACAAGTCAAA ATATGTAGAGAATTTACTGATTAACTGGCTCTCATTATCATTTCTTGGATATCATATGGACCTTCTTCCTGAAAATGTTT TATCATGTGTGTCTTCAAGCTTGCCAAACGTTCCTTCTCGACTGCTACATTTGCTCAATATAATATGTAGGCGCGTGGTG TTAGCAGAGCTCGATGCTGATCAAATAACTGGAATAAATAGCAAGATTCGAAACTTGGAAGGGGCCTGCCCTGACACTGA AAAGAAAATTACTATGTGGATCGAAATTCTTTTGCGCAGTGAAAGAGAGCTCCGAGAAAGGCTTGTGGGTCTTACTTTTT CTGCTTTCCGAAATAGCATGTCCTCTTTCGAAGCAACTCCTTCCCGACCTGGCTGTTGGTATCTTGTTGGACTAGCACAG ATGGAACAATGGGTTGCATTAGACCAGGAACATGTACGAGAGCAGTTGAAATTCATTGCATCAGAACTTACTCATGAAAA AAGGTACTGCTTGCTTGTATTTGTATATTTTAGATACTGTTCCTTTTTCCAATTCTGTAATTCTAGCTATTTCATAGCTT TGTTTGAGCACAAACTTCTTTTCCCTGGAATTGAGGCTAGCCAGATTTCAATCTGAGTAATATACATTAGTATTTTTTTT TCCCAAAAATGGTGAAGAAACATTATCTGATTGTAGTGAAAACTGTAGATGCTGCAATTCTTTTTTCTGTTTGTTGAATT TGATGGAAAGTATACTCAAAATATTAGGGGAAGAGATTTTCCCATAATAATTTTTTAGGAATAAATGTAAAAAACCCCTT GGTAAAAAATATCAGATAAGAAATAATTAACATTGCTGGTAAAAGTTGTCAACAGAGCGGCTGGAAAATTCAAAATAACT ATTTTTATCAAAATAATTATTTTATCATAATTATTATGATTTTGTTACTTTCCTTAATTTAACTGGTAAATTCTTGTTGA TAAGAAATTTCCTTACAGCTAGTAGAAATCTGCTTGCATAAATTTACTGAGTAAGAACCATAGAATAGTTAGTTTCAAAA AAAAAAAAAAAAGAACCATAGAATAGTTACTAAGCTTGTAAAGTAAAGTCTTGCAATGCTGTGGATTCGGTCCAGAACTT AAAATATGCTAATTGCAATGTGTTTTTCTTTTAAATGGCAGGTTTGTGACTAGTGGATATTCAGAAGTGGAGCCATGCAG TTATTGTTCTGCATCTGTTGTATTTGAATCCCCCGAGTTTGGTTTGTGCCAAGGTGAAAATTGCAGTAGTGGCAATGTTA AACGGCACCAGTTGTTGAGATGTGCTGTTTGCATGGAGGTTTGCCCTAGTACTCCCCTATGGTTTTGTGTTTGTTGCCAT AGGTTTGCATTTAGGTTGGCACCAGAACCACTTTTTAGAATGTCTTCATTTTGTCTAGATTTAGATTCTTCAACTAAATC ATCCTCTCAAGTAGTATCCTCAAGACCGTTGTGTCCCTTTTGCGGGATACTGCTACAAAGAAAACAACCAGACTTTCTAC TTTCACCGACACCTGTATAGGAATGTTTAGCTATTTTTCTATTTTTTTATGTAAAATAATATTATGTAATTGTAATAGGT TGTGTACTTGTGGTGTCAATGGCTTCATCCTAATCCTATATGTATTGTATAAAAGAGAAGGTTATTTGTATGAAACCACT AGAAACTTATAACATTATTGATTCTGATTGTAGTGTGATATTTTCAATTGACATCTTGTAACGGGTTTTAATGTTTTCTG GTCACATGGGTTGTTCTATTTTTCACTGCTGTATGATAAAAATTATGATGAACCTGTATTTGGTCTGGTTAGCATTTGAT GAACTGATTTCTTATGGGATGAATTCAACCTGTTTGATAAAATGACTGGGTCACATTTAAAGTGTTCTTTCTATGTTAGC TGGGTAATATATCAATGTCTTGATATGATTAGATCGGTTTTTTGTATTTGTTTTAACCATG
CDS sequence (LotjaGi5g1v0145700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTTTAGCCATAGGAAAAGGTTCTGGTTCCTTTGAAATATGGCTATGCGATATATCTACTAGGGAATTTGATAAGCT TGGGTCATATGATGCACATGATTGCATTATTACAGGTTTAGCCTGGGCATTTGGTGGAAGATTTTTGTACAGCTGTAGCC AGGATAATTTATTGCATAGCTGGATCTTGCACGAGAGTCGCCTAGATGAAGTATCCATTTTATCTGATTTTCCCCGGAGT AATGATTCAATCTGCCCATCAAGAGATGCATTTAATTCATGTTTTGGTGTAGCTGTATCCCATGGAAATCTTGTCATTGC AACTGTTAATTGCTTCGATGTTGAGAAACTAAATCGAATGTATGAAGGAAGGATTCTGAGGGCAGCTATTGAATACTTCT GGATTGGTGGGCTACATGTGGATGTTTGGTTGAAACCTCCCTTTTCTTGCTACATTGAAAAATATTCCAGTTTTCCAGAG AAAGAGTTAACTTATTGGGGGGCCAATATCATATGGTCTTTAAACCAATATCAATGTCTTGATAAGCCTCTGGTTCTTTG GGATATAATTGCAGCATTATTGGGTTTGAAGGATAACAAGTCAAAATATGTAGAGAATTTACTGATTAACTGGCTCTCAT TATCATTTCTTGGATATCATATGGACCTTCTTCCTGAAAATGTTTTATCATGTGTGTCTTCAAGCTTGCCAAACGTTCCT TCTCGACTGCTACATTTGCTCAATATAATATGTAGGCGCGTGGTGTTAGCAGAGCTCGATGCTGATCAAATAACTGGAAT AAATAGCAAGATTCGAAACTTGGAAGGGGCCTGCCCTGACACTGAAAAGAAAATTACTATGTGGATCGAAATTCTTTTGC GCAGTGAAAGAGAGCTCCGAGAAAGGCTTGTGGGTCTTACTTTTTCTGCTTTCCGAAATAGCATGTCCTCTTTCGAAGCA ACTCCTTCCCGACCTGGCTGTTGGTATCTTGTTGGACTAGCACAGATGGAACAATGGGTTGCATTAGACCAGGAACATGT ACGAGAGCAGTTGAAATTCATTGCATCAGAACTTACTCATGAAAAAAGGTTTGTGACTAGTGGATATTCAGAAGTGGAGC CATGCAGTTATTGTTCTGCATCTGTTGTATTTGAATCCCCCGAGTTTGGTTTGTGCCAAGGTGAAAATTGCAGTAGTGGC AATGTTAAACGGCACCAGTTGTTGAGATGTGCTGTTTGCATGGAGGTTTGCCCTAGTACTCCCCTATGGTTTTGTGTTTG TTGCCATAGGTTTGCATTTAGGTTGGCACCAGAACCACTTTTTAGAATGTCTTCATTTTGTCTAGATTTAGATTCTTCAA CTAAATCATCCTCTCAAGTAGTATCCTCAAGACCGTTGTGTCCCTTTTGCGGGATACTGCTACAAAGAAAACAACCAGAC TTTCTACTTTCACCGACACCTGTATAG
Protein sequence (LotjaGi5g1v0145700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLAIGKGSGSFEIWLCDISTREFDKLGSYDAHDCIITGLAWAFGGRFLYSCSQDNLLHSWILHESRLDEVSILSDFPRS NDSICPSRDAFNSCFGVAVSHGNLVIATVNCFDVEKLNRMYEGRILRAAIEYFWIGGLHVDVWLKPPFSCYIEKYSSFPE KELTYWGANIIWSLNQYQCLDKPLVLWDIIAALLGLKDNKSKYVENLLINWLSLSFLGYHMDLLPENVLSCVSSSLPNVP SRLLHLLNIICRRVVLAELDADQITGINSKIRNLEGACPDTEKKITMWIEILLRSERELRERLVGLTFSAFRNSMSSFEA TPSRPGCWYLVGLAQMEQWVALDQEHVREQLKFIASELTHEKRFVTSGYSEVEPCSYCSASVVFESPEFGLCQGENCSSG NVKRHQLLRCAVCMEVCPSTPLWFCVCCHRFAFRLAPEPLFRMSSFCLDLDSSTKSSSQVVSSRPLCPFCGILLQRKQPD FLLSPTPV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 126 | 126 | 3.0E-8 | ||
| PANTHER | 3 | 477 | 475 | 2.1E-123 | – | |
| SUPERFAMILY | 3 | 115 | 113 | 5.95E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0145700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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