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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0149500 |
| Transcript ID | LotjaGi5g1v0149500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription factor; TAIR: AT2G20180.2 phytochrome interacting factor 3-like 5; Swiss-Prot: sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1; TrEMBL-Plants: tr|A0A072VK93|A0A072VK93_MEDTR Transcription factor; Found in the gene: LotjaGi5g1v0149500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:38820055..38823402) extracted from Lotus japonicus Gifu genome v1.2.
TTCACAGTTAAAGACGATGTGAGCTAATCACCTCTACCTTAACCTTGTGGTTGGAAATAATGAATATTGAATAAGAGTGT GAATTGATGCAAACCGTCAAAATCCCTTTTCGTCCTTTATTCTCGACTCCTTATCTTTGCTCTGCTCTGCTCGAGAGGCA AGCAACAACCACAACTGCTCCGGCAACCATTAACAACCATGCTCAACTAGCTAGCTCTGATAACAGTAAGTGCTCCTCTT TTGCATCTTCAGTTGCTATTTGCTATTCCAATTCCTCTCTTCTGTAATCTGAATTTTTGTTCTTATCACTGATACTGAAC AGAGCAAAAATGAATCACTGTGTTCCAGATTTCGAAATCCGAATCCACAACGAAGAAGAGTACCCAATACACATCTCAAA GAAACCCTCCATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAAAACCAAC GGCCACCGTTAAGGAAACCACCGCAACCGTTTCCGACGAGGGGGATTCGAGCGGAAAACTACAGCAACCAACACCTGTTC ATGGAAGAACACGAAACGGCTTCATGGCTTCACGGTTCAATAGACGAAGATCCTGTTTTCGACCACCGAGATTTCTGCGC CGACATCCTCTGCCAGCTGACGGGTGCTAACGGCGGTCAGAATCACAGCGGTGTCGTGCAAGCCTCGGCCCGTGCGCCGC CGGAGCGAGCGGTGAATAGGATTCAGAACTTCACGTACTTCTCGAAGCACAGCGATGTGAAAGGTGAGCCACGGTCGGCG GCGACGAGGGAATTGACTGTGCTTGATTCGTGCGAGACTCCAATCGTGACGGCGGCTGCAGCTTCCAGGCTATCAGAGAC CGTCAGGAGCTCGCCGGAATCCGGCCGCGGGAGCATGAGCGCTGCCGGAATAGCTGGGCCTTCGACGGCAACGTTCGACA TGACTGTGACTTCATCGCCTGGCGGTTCTAGCGGGAGTGCTGAACCGGATCAGAAGGAACCGGTGGTGGACCGGAAGAGG AAGAGCCGGGAACTGGAGGAATCGGAGTTTCAAAGCGAGGTGAGTGAGCATGTTCATTCAGTTGAGTAATATTCAGTTTC TCTTTTTTTTTCTCAAATAATTTTTAAACTAACCAATAAAATTCTGTGAGAAAAGATTAGAGGATCAATAGTCTAATAAA CAATGTCAAATTTGTGTTTTCTGTTTTCCATTTTCTGCAAGCTATATAAATTTGTTATATGCTGCTTCTATGTATTCTGA TCTGTCTTTTTTTCACTGCAAAAGGATGTTGATTTTGAATCTCTGGAAGCTAAAAAACAAGGCCGTGGTGCGAAGAAATC TCGTGCCGCGGAGATCCATAATCTATCAGAGAGGGTCTGTAATCAGTACATACATAACATTAACGAGTCCGTAAATTTCA TCTGTTTTTCTGAGTCTTCATGTTGAATTTGTATGCAGAAGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTACAA GAATTGATACCTCGGTGCAACAAGGTCAAGAGACTTCTCTAAATTTACAGTACTTCTTTTGTTTTCATTGAGAGTATTCT GGATTTTACTTCCTACCTTGTTAGCTGTTTCTAATATTGATTCCTTTTCTGAACTTGTTAGTCTGACAAAGCTTCAATGC TGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGGTAAATTCTTTCTTCATGTCTTCATACCTGAAA TTTGCATATTGGTGACAAGAAGAGGGTGAAATTGATTTATGCAGATGATGTCCATGGGATGTGGAATGGTGCCTATGATG TTTCCTGGAGTGCAACAGTATATGCCACCAATGGGAATGGGAATGGGGATGGGAATGGGAATGGGCATGGAAATGGGAAT GGGAATGAACAGGCCAATAATGCCATTTCCAAACATGTTAACCGCCAATTCAGCTATGCCAGCAACAGCAGCAGCAGCTG CTCATTTGGGACCAAGGTTCCCTGTGCCTCCTTTCCAAAATATCCCCCATGTTCCTGCTGCACCTGATTCGTCCGGAATG CAGCAACCACCAAATCAGTCTGATCATGTGCTTAACTCATTTGCTACACTGCCTCCAGATCAATCACGCTTCCCAAACTT CACAGATCCTTTTCAACAATACCTTGGTTCCCATCAGGTACAGATACAGTTAATGCAGGTAATTTTGTCCTTACTTTTAT TTCTGAGTCTTTGTTTTTATTTGACTTTGAGGTAGTATGTTGCATCATGGTAGCTAGTACCCTTGTCCATTTTTGAGATG ATAAGGCAGCGGGGAAACTCTGCTGGTTTCCAAGCCACATGCTCTGATATTTTTGTAACTTCATTGATATGTGAAATCAG GCAATGAATCAACTGAATGTCAATAAGCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCAATCAGGTAAATT GCCATTTGCGCTCCTGATATATATATATAGTATAACAGGAACACAATCACAATTCAAGAATATTACGCGGAAAACTCCGA AATGTTAGATAACTCTAGTTAATCTCGCGGCCTGTATGTTGTAAACATAACTATTTGTATTTCAATTTTTTCAGAAGAAA CATGATCTGTTGAAATCTACAAACAACCGCTGACAAATTAGATGGTGTTGTTTGCCATTTTATCACTGGTTCCAGACTCA CACGATAGTGGCTTCCAAGTCATTTTAGTATTCTTGCTCTAAAGAAGGACGACTACCATTAACAACTTACTTGCATACAC TGCAAGTTATATTTTCCAGCAGTTTTATCCTTGCTGCCATGGTGGTGTAATGTATGAGAACTAACTTTTTTGCGGAGTTC TCAATAGCAAGCTAATCTATACACGACTAACATGTAAATTATTGTTACCCTTATAGTATTTTTGTCCCCTTTCTGTACCT TTTCTTCCAACTTAAACTTTTTTTTTTGGAAGTCCAAATATAGTAATAATAATAAAGAAGGAAGAGGCTAAGTTTGAGTA TAGGAGGGTGAGGATAACAAATACAAAAACCCCAACCATCCACAAAAATAAACTTCATTCTATATTTATAGATGATTTGT TACGGGAAGTATAGTTCTTTATACAGTCTACCTCAATCGTGGGAGTTGCTTTATTTTCAGTCTTAAAATTGCTTCAAGCT CATGTTACTGCTCTTTGTGATGATTATTTAAAGAGATAGTAACAATTTTATATTTTCATCACTCATGCAAATATAGTTCG TAAATGAAGTAAATTATAAACTTAAAAGAGTTACCCGACAGAATTTGGTTAAAATAAAATATAGTAAG
CDS sequence (LotjaGi5g1v0149500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCACTGTGTTCCAGATTTCGAAATCCGAATCCACAACGAAGAAGAGTACCCAATACACATCTCAAAGAAACCCTC CATGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAAAACCAACGGCCACCGT TAAGGAAACCACCGCAACCGTTTCCGACGAGGGGGATTCGAGCGGAAAACTACAGCAACCAACACCTGTTCATGGAAGAA CACGAAACGGCTTCATGGCTTCACGGTTCAATAGACGAAGATCCTGTTTTCGACCACCGAGATTTCTGCGCCGACATCCT CTGCCAGCTGACGGGTGCTAACGGCGGTCAGAATCACAGCGGTGTCGTGCAAGCCTCGGCCCGTGCGCCGCCGGAGCGAG CGGTGAATAGGATTCAGAACTTCACGTACTTCTCGAAGCACAGCGATGTGAAAGGTGAGCCACGGTCGGCGGCGACGAGG GAATTGACTGTGCTTGATTCGTGCGAGACTCCAATCGTGACGGCGGCTGCAGCTTCCAGGCTATCAGAGACCGTCAGGAG CTCGCCGGAATCCGGCCGCGGGAGCATGAGCGCTGCCGGAATAGCTGGGCCTTCGACGGCAACGTTCGACATGACTGTGA CTTCATCGCCTGGCGGTTCTAGCGGGAGTGCTGAACCGGATCAGAAGGAACCGGTGGTGGACCGGAAGAGGAAGAGCCGG GAACTGGAGGAATCGGAGTTTCAAAGCGAGGATGTTGATTTTGAATCTCTGGAAGCTAAAAAACAAGGCCGTGGTGCGAA GAAATCTCGTGCCGCGGAGATCCATAATCTATCAGAGAGGAAGCGTCGAGATAGAATCAATGAAAAGATGAGAGCTTTAC AAGAATTGATACCTCGGTGCAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAG TTACAAGTGCAGATGATGTCCATGGGATGTGGAATGGTGCCTATGATGTTTCCTGGAGTGCAACAGTATATGCCACCAAT GGGAATGGGAATGGGGATGGGAATGGGAATGGGCATGGAAATGGGAATGGGAATGAACAGGCCAATAATGCCATTTCCAA ACATGTTAACCGCCAATTCAGCTATGCCAGCAACAGCAGCAGCAGCTGCTCATTTGGGACCAAGGTTCCCTGTGCCTCCT TTCCAAAATATCCCCCATGTTCCTGCTGCACCTGATTCGTCCGGAATGCAGCAACCACCAAATCAGTCTGATCATGTGCT TAACTCATTTGCTACACTGCCTCCAGATCAATCACGCTTCCCAAACTTCACAGATCCTTTTCAACAATACCTTGGTTCCC ATCAGGCAATGAATCAACTGAATGTCAATAAGCCAAGTACCAGTAGGGGCCAAGAGAATCCAGAAAAGCATCAATCAGAA GAAACATGA
Protein sequence (LotjaGi5g1v0149500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNHCVPDFEIRIHNEEEYPIHISKKPSMQNDEIMELLWQNGQVVMQSQNQRPPLRKPPQPFPTRGIRAENYSNQHLFMEE HETASWLHGSIDEDPVFDHRDFCADILCQLTGANGGQNHSGVVQASARAPPERAVNRIQNFTYFSKHSDVKGEPRSAATR ELTVLDSCETPIVTAAAASRLSETVRSSPESGRGSMSAAGIAGPSTATFDMTVTSSPGGSSGSAEPDQKEPVVDRKRKSR ELEESEFQSEDVDFESLEAKKQGRGAKKSRAAEIHNLSERKRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQ LQVQMMSMGCGMVPMMFPGVQQYMPPMGMGMGMGMGMGMEMGMGMNRPIMPFPNMLTANSAMPATAAAAAHLGPRFPVPP FQNIPHVPAAPDSSGMQQPPNQSDHVLNSFATLPPDQSRFPNFTDPFQQYLGSHQAMNQLNVNKPSTSRGQENPEKHQSE ET
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 479 | 457 | 5.3E-152 | – | |
| PANTHER | 23 | 479 | 457 | 5.3E-152 | – | |
| MobiDBLite | 179 | 283 | 105 | - | – | |
| MobiDBLite | 180 | 194 | 15 | - | – | |
| MobiDBLite | 207 | 223 | 17 | - | – | |
| MobiDBLite | 228 | 245 | 18 | - | – | |
| MobiDBLite | 253 | 283 | 31 | - | – | |
| Gene3D | 265 | 328 | 64 | 2.8E-19 | ||
| ProSiteProfiles | 270 | 319 | 50 | 17.854 | ||
| SUPERFAMILY | 273 | 348 | 76 | 1.83E-20 | ||
| CDD | 275 | 324 | 50 | 1.2492E-16 | ||
| Pfam | 275 | 320 | 46 | 4.3E-13 | ||
| SMART | 276 | 325 | 50 | 2.9E-17 | ||
| MobiDBLite | 404 | 482 | 79 | - | – | |
| MobiDBLite | 414 | 469 | 56 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi5g1v0149500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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